Wall clock time and date at job start Tue Mar 31 2020 06:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47446 * 2 1 4 4 C 1.50698 * 109.47333 * 239.99446 * 2 1 3 5 5 H 1.08006 * 120.00177 * 240.00010 * 4 2 1 6 6 C 1.37875 * 120.00401 * 60.00377 * 4 2 1 7 7 N 1.31518 * 119.99218 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00435 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47068 * 90.00168 * 8 6 4 10 10 H 1.48496 * 109.46976 * 209.99775 * 8 6 4 11 11 H 1.48498 * 109.47077 * 330.00133 * 8 6 4 12 12 O 1.45204 * 109.47026 * 119.99703 * 2 1 3 13 13 C 1.34754 * 116.99684 * 270.00370 * 12 2 1 14 14 O 1.21503 * 120.00144 * 359.97438 * 13 12 2 15 15 C 1.47403 * 119.99592 * 179.97438 * 13 12 2 16 16 C 1.39590 * 120.06351 * 0.02562 * 15 13 12 17 17 C 1.37758 * 120.18243 * 180.29447 * 16 15 13 18 18 C 1.38669 * 119.98385 * 359.58163 * 17 16 15 19 19 C 1.37657 * 120.32960 * 0.55429 * 18 17 16 20 20 C 1.38881 * 120.87544 * 359.44682 * 19 18 17 21 21 O 1.35840 * 111.30955 * 180.93421 * 20 19 18 22 22 C 1.43775 * 109.27874 * 340.97731 * 21 20 19 23 23 C 1.53004 * 110.75091 * 269.41385 * 22 21 20 24 24 C 1.52993 * 110.91587 * 146.12822 * 22 21 20 25 25 C 1.51671 * 132.13341 * 179.25228 * 19 18 17 26 26 H 1.09003 * 109.46835 * 60.00951 * 1 2 3 27 27 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47760 * 300.00696 * 1 2 3 29 29 H 0.97001 * 119.99605 * 180.02562 * 7 6 4 30 30 H 1.08002 * 119.90489 * 0.02562 * 16 15 13 31 31 H 1.08002 * 120.00855 * 179.83811 * 17 16 15 32 32 H 1.07997 * 119.83264 * 180.28274 * 18 17 16 33 33 H 1.09002 * 109.47254 * 173.34151 * 23 22 21 34 34 H 1.08999 * 109.47242 * 293.34784 * 23 22 21 35 35 H 1.09003 * 109.46528 * 53.34780 * 23 22 21 36 36 H 1.09008 * 109.47150 * 306.55982 * 24 22 21 37 37 H 1.09006 * 109.47535 * 66.55994 * 24 22 21 38 38 H 1.09003 * 109.47645 * 186.56157 * 24 22 21 39 39 H 1.09001 * 110.94391 * 313.69451 * 25 19 18 40 40 H 1.08998 * 110.94428 * 77.38958 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4875 -0.1406 -5.1119 11 1 3.6310 -1.7569 -3.7116 12 8 2.0139 -0.6844 1.1856 13 6 2.2178 0.0671 2.2854 14 8 1.9976 1.2616 2.2544 15 6 2.7079 -0.5601 3.5261 16 6 2.9618 -1.9322 3.5630 17 6 3.4141 -2.5219 4.7229 18 6 3.6265 -1.7503 5.8554 19 6 3.3768 -0.3968 5.8312 20 6 2.9203 0.2232 4.6754 21 8 2.7588 1.5589 4.8625 22 6 2.6778 1.8345 6.2713 23 6 1.2253 1.7878 6.7501 24 6 3.3116 3.1875 6.6005 25 6 3.4974 0.6792 6.8933 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 0.7092 1.1611 -3.4845 30 1 2.7990 -2.5338 2.6810 31 1 3.6071 -3.5842 4.7491 32 1 3.9855 -2.2144 6.7621 33 1 1.1974 1.8815 7.8357 34 1 0.6678 2.6092 6.3000 35 1 0.7761 0.8394 6.4556 36 1 4.3253 3.2206 6.2011 37 1 2.7185 3.9851 6.1530 38 1 3.3427 3.3208 7.6819 39 1 3.0553 0.3499 7.8336 40 1 4.5378 0.9719 7.0351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000847648246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:42 Heat of formation + Delta-G solvation = -99.937296 kcal Electronic energy + Delta-G solvation = -23198.089615 eV Core-core repulsion = 19750.192865 eV Total energy + Delta-G solvation = -3447.896751 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.45122 -39.22435 -37.49017 -35.53251 -33.87699 -33.20603 -31.75925 -30.38485 -29.33170 -27.65798 -26.66673 -25.27728 -24.08764 -22.02744 -21.28426 -20.71307 -19.51470 -17.29922 -17.12573 -16.48036 -16.11318 -15.80403 -15.37883 -14.93341 -14.73146 -14.47553 -14.01893 -13.86221 -13.29970 -13.05554 -12.86227 -12.74440 -12.41786 -12.19411 -12.15565 -11.94207 -11.82752 -11.60243 -11.40863 -11.16090 -11.02559 -10.99072 -10.78731 -10.75762 -10.32974 -10.23442 -9.53449 -9.44390 -8.90425 -8.84059 -8.44207 -8.15426 -6.13666 -4.20319 0.92501 1.32884 3.07550 3.18305 3.27711 3.32753 3.36803 3.69826 3.97080 4.22808 4.31176 4.38423 4.61666 4.79789 4.86631 5.06261 5.14274 5.19358 5.27825 5.30206 5.39957 5.45693 5.54148 5.58059 5.71466 5.76167 5.88200 6.00045 6.01717 6.26507 6.32338 6.42178 6.65116 6.71620 6.95831 6.98580 7.17786 7.25258 7.65004 7.79114 8.00315 8.19948 8.71859 8.95693 9.44833 10.93926 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.004010 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.279226 B = 6981.565824 C = 7673.258659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.272 1.272 12 O -0.354 6.354 13 C 0.493 3.507 14 O -0.505 6.505 15 C -0.136 4.136 16 C -0.029 4.029 17 C -0.166 4.166 18 C -0.045 4.045 19 C -0.195 4.195 20 C 0.170 3.830 21 O -0.267 6.267 22 C 0.093 3.907 23 C -0.162 4.162 24 C -0.140 4.140 25 C -0.096 4.096 26 H 0.099 0.901 27 H 0.036 0.964 28 H 0.015 0.985 29 H 0.266 0.734 30 H 0.149 0.851 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.091 0.909 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.263 -2.474 21.137 21.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.557 4.557 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.271 6.271 13 C 0.337 3.663 14 O -0.395 6.395 15 C -0.138 4.138 16 C -0.047 4.047 17 C -0.184 4.184 18 C -0.064 4.064 19 C -0.196 4.196 20 C 0.123 3.877 21 O -0.180 6.180 22 C 0.055 3.945 23 C -0.219 4.219 24 C -0.197 4.197 25 C -0.133 4.133 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.035 0.965 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.072 -1.782 20.768 21.239 hybrid contribution 0.191 -0.350 -0.807 0.900 sum 4.263 -2.132 19.962 20.523 Atomic orbital electron populations 1.22155 0.97612 1.00048 1.01372 1.20622 0.91341 0.93998 0.77651 0.93562 1.21028 1.32401 1.13418 0.88884 0.91304 1.24887 0.94988 0.95092 0.99037 1.69911 1.36182 1.22535 1.24092 0.86273 0.79286 0.79111 0.81454 1.20381 1.21001 1.19625 1.86523 1.76248 1.43215 1.21079 1.20792 0.75602 0.85420 0.84521 1.90811 1.48221 1.15931 1.84553 1.18773 1.10289 0.93265 0.91495 1.21376 0.92271 0.92246 0.98786 1.20994 1.04431 1.00321 0.92646 1.20451 0.96075 0.91350 0.98482 1.20696 1.07714 0.95367 0.95826 1.19453 0.91322 0.83681 0.93242 1.87082 1.86572 1.18985 1.25331 1.22847 0.96148 0.96314 0.79154 1.22196 0.94640 1.03639 1.01433 1.21823 1.01606 0.94408 1.01894 1.21867 1.01530 0.92208 0.97718 0.88276 0.94464 0.96541 0.92449 0.83289 0.84823 0.85572 0.90794 0.91025 0.91801 0.91314 0.91012 0.90421 0.89038 0.89075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.08 9.33 37.16 0.35 -3.73 16 2 C 0.22 6.07 2.56 -27.89 -0.07 6.00 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 4 C -0.52 -14.95 8.90 -34.44 -0.31 -15.26 16 5 H 0.07 1.94 7.81 -52.48 -0.41 1.53 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.91 21.43 29.54 -169.99 -5.02 16.41 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 O -0.35 -8.92 9.09 -40.64 -0.37 -9.29 16 13 C 0.49 11.64 7.86 34.46 0.27 11.91 16 14 O -0.50 -13.35 15.12 -24.88 -0.38 -13.73 16 15 C -0.14 -2.57 5.89 -104.73 -0.62 -3.18 16 16 C -0.03 -0.44 9.59 -39.25 -0.38 -0.81 16 17 C -0.17 -1.94 10.05 -39.60 -0.40 -2.34 16 18 C -0.05 -0.50 10.02 -39.63 -0.40 -0.90 16 19 C -0.20 -2.52 6.26 -104.12 -0.65 -3.17 16 20 C 0.17 2.91 6.60 -38.42 -0.25 2.65 16 21 O -0.27 -4.66 9.55 -34.84 -0.33 -4.99 16 22 C 0.09 1.10 1.26 -89.72 -0.11 0.99 16 23 C -0.16 -1.69 8.86 37.16 0.33 -1.36 16 24 C -0.14 -1.31 8.95 37.15 0.33 -0.97 16 25 C -0.10 -0.95 6.18 -26.51 -0.16 -1.11 16 26 H 0.10 2.77 6.07 -51.93 -0.32 2.46 16 27 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.15 2.22 7.59 -52.49 -0.40 1.82 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 32 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.06 0.75 8.07 -51.93 -0.42 0.33 16 36 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.68 7.92 -51.93 -0.41 0.27 16 40 H 0.09 0.78 7.93 -51.93 -0.41 0.37 16 LS Contribution 337.53 15.07 5.09 5.09 Total: -1.00 -33.65 337.53 -8.23 -41.88 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.68 Total: -0.50 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -2.16 Total: -9.65 kcal Atomic # 7 Polarization: -25.85 SS G_CDS: 0.63 Total: -25.22 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.08 Total: -28.01 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.65 -8.23 -41.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847648246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.060 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds