Wall clock time and date at job start Tue Mar 31 2020 06:24:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 109.47446 * 2 1 4 4 C 1.50698 * 109.47333 * 239.99446 * 2 1 3 5 5 H 1.08006 * 120.00177 * 240.00010 * 4 2 1 6 6 C 1.37875 * 120.00401 * 60.00377 * 4 2 1 7 7 N 1.31518 * 119.99218 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00435 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47068 * 90.00168 * 8 6 4 10 10 H 1.48496 * 109.46976 * 209.99775 * 8 6 4 11 11 H 1.48498 * 109.47077 * 330.00133 * 8 6 4 12 12 O 1.45204 * 109.47026 * 119.99703 * 2 1 3 13 13 C 1.34754 * 116.99684 * 270.00370 * 12 2 1 14 14 O 1.21503 * 120.00144 * 359.97438 * 13 12 2 15 15 C 1.47403 * 119.99592 * 179.97438 * 13 12 2 16 16 C 1.39590 * 120.06351 * 0.02562 * 15 13 12 17 17 C 1.37758 * 120.18243 * 180.29447 * 16 15 13 18 18 C 1.38669 * 119.98385 * 359.58163 * 17 16 15 19 19 C 1.37657 * 120.32960 * 0.55429 * 18 17 16 20 20 C 1.38881 * 120.87544 * 359.44682 * 19 18 17 21 21 O 1.35840 * 111.30955 * 180.93421 * 20 19 18 22 22 C 1.43775 * 109.27874 * 340.97731 * 21 20 19 23 23 C 1.53004 * 110.75091 * 269.41385 * 22 21 20 24 24 C 1.52993 * 110.91587 * 146.12822 * 22 21 20 25 25 C 1.51671 * 132.13341 * 179.25228 * 19 18 17 26 26 H 1.09003 * 109.46835 * 60.00951 * 1 2 3 27 27 H 1.09001 * 109.47161 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47760 * 300.00696 * 1 2 3 29 29 H 0.97001 * 119.99605 * 180.02562 * 7 6 4 30 30 H 1.08002 * 119.90489 * 0.02562 * 16 15 13 31 31 H 1.08002 * 120.00855 * 179.83811 * 17 16 15 32 32 H 1.07997 * 119.83264 * 180.28274 * 18 17 16 33 33 H 1.09002 * 109.47254 * 173.34151 * 23 22 21 34 34 H 1.08999 * 109.47242 * 293.34784 * 23 22 21 35 35 H 1.09003 * 109.46528 * 53.34780 * 23 22 21 36 36 H 1.09008 * 109.47150 * 306.55982 * 24 22 21 37 37 H 1.09006 * 109.47535 * 66.55994 * 24 22 21 38 38 H 1.09003 * 109.47645 * 186.56157 * 24 22 21 39 39 H 1.09001 * 110.94391 * 313.69451 * 25 19 18 40 40 H 1.08998 * 110.94428 * 77.38958 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6994 -0.2396 -2.4827 7 7 0.9437 0.8300 -2.6034 8 14 2.3227 -1.1199 -4.0078 9 1 1.3450 -2.1619 -4.4122 10 1 2.4875 -0.1406 -5.1119 11 1 3.6310 -1.7569 -3.7116 12 8 2.0139 -0.6844 1.1856 13 6 2.2178 0.0671 2.2854 14 8 1.9976 1.2616 2.2544 15 6 2.7079 -0.5601 3.5261 16 6 2.9618 -1.9322 3.5630 17 6 3.4141 -2.5219 4.7229 18 6 3.6265 -1.7503 5.8554 19 6 3.3768 -0.3968 5.8312 20 6 2.9203 0.2232 4.6754 21 8 2.7588 1.5589 4.8625 22 6 2.6778 1.8345 6.2713 23 6 1.2253 1.7878 6.7501 24 6 3.3116 3.1875 6.6005 25 6 3.4974 0.6792 6.8933 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8898 29 1 0.7092 1.1611 -3.4845 30 1 2.7990 -2.5338 2.6810 31 1 3.6071 -3.5842 4.7491 32 1 3.9855 -2.2144 6.7621 33 1 1.1974 1.8815 7.8357 34 1 0.6678 2.6092 6.3000 35 1 0.7761 0.8394 6.4556 36 1 4.3253 3.2206 6.2011 37 1 2.7185 3.9851 6.1530 38 1 3.3427 3.3208 7.6819 39 1 3.0553 0.3499 7.8336 40 1 4.5378 0.9719 7.0351 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847648246.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:41 Heat of formation + Delta-G solvation = -119.558528 kcal Electronic energy + Delta-G solvation = -23198.940456 eV Core-core repulsion = 19750.192865 eV Total energy + Delta-G solvation = -3448.747591 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.52445 -41.06621 -38.62232 -37.52697 -35.35416 -34.85975 -32.88224 -31.79661 -31.15914 -28.43684 -27.55917 -27.50219 -25.61368 -23.12472 -23.06184 -21.64933 -21.29415 -19.03657 -18.52359 -18.14865 -17.60253 -17.01369 -16.95803 -16.56437 -16.26490 -15.91022 -15.12503 -14.90101 -14.71639 -14.33936 -14.20647 -14.04631 -13.70731 -13.61168 -13.24387 -13.22190 -13.04546 -12.94685 -12.82658 -12.80510 -12.67500 -12.43709 -12.40206 -12.17169 -11.87276 -11.70955 -11.61745 -11.34062 -11.03082 -10.62833 -10.02011 -9.22953 -8.30901 -6.48831 -0.30245 0.27426 1.40060 1.43598 1.54609 1.60014 1.95154 2.15295 2.40163 2.69740 2.99545 3.35209 3.45272 3.79631 3.82287 3.91237 4.00146 4.15863 4.28778 4.39862 4.48652 4.61731 4.67021 4.69040 4.70613 4.73497 4.78258 4.83704 4.90091 4.96620 5.07516 5.15614 5.20275 5.23574 5.30431 5.37381 5.44365 5.56631 5.69772 5.85888 6.02100 6.15043 6.56641 6.92579 7.23013 8.77574 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024378 B = 0.004010 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.279226 B = 6981.565824 C = 7673.258659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.218 3.782 3 H 0.001 0.999 4 C -0.549 4.549 5 H 0.070 0.930 6 C 0.015 3.985 7 N -0.919 5.919 8 Si 0.989 3.011 9 H -0.264 1.264 10 H -0.277 1.277 11 H -0.264 1.264 12 O -0.356 6.356 13 C 0.485 3.515 14 O -0.550 6.550 15 C -0.181 4.181 16 C -0.040 4.040 17 C -0.150 4.150 18 C -0.023 4.023 19 C -0.190 4.190 20 C 0.145 3.855 21 O -0.313 6.313 22 C 0.075 3.925 23 C -0.159 4.159 24 C -0.137 4.137 25 C -0.085 4.085 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.016 0.984 29 H 0.272 0.728 30 H 0.142 0.858 31 H 0.175 0.825 32 H 0.179 0.821 33 H 0.114 0.886 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.129 0.871 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.762 -4.938 23.964 25.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.164 3.836 3 H 0.018 0.982 4 C -0.586 4.586 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.811 3.189 9 H -0.189 1.189 10 H -0.202 1.202 11 H -0.188 1.188 12 O -0.273 6.273 13 C 0.332 3.668 14 O -0.443 6.443 15 C -0.183 4.183 16 C -0.058 4.058 17 C -0.167 4.167 18 C -0.041 4.041 19 C -0.191 4.191 20 C 0.098 3.902 21 O -0.227 6.227 22 C 0.038 3.962 23 C -0.216 4.216 24 C -0.194 4.194 25 C -0.121 4.121 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.160 0.840 31 H 0.193 0.807 32 H 0.196 0.804 33 H 0.132 0.868 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.147 0.853 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.568 -4.256 23.625 24.643 hybrid contribution -0.257 0.463 -1.536 1.624 sum 5.311 -3.793 22.090 23.034 Atomic orbital electron populations 1.21970 0.96740 1.00466 1.00557 1.20366 0.92072 0.91956 0.79168 0.98166 1.21285 1.33607 1.13991 0.89714 0.91184 1.25917 0.94630 0.95642 1.02297 1.70040 1.36644 1.23699 1.25300 0.85099 0.79066 0.78070 0.76654 1.18853 1.20223 1.18843 1.86512 1.76595 1.43079 1.21118 1.21853 0.74453 0.85184 0.85268 1.90761 1.50543 1.17778 1.85222 1.18776 1.14439 0.95195 0.89870 1.21445 0.93272 0.90645 1.00478 1.21454 1.01916 1.02267 0.91100 1.21066 0.92972 0.90265 0.99794 1.21187 1.06229 0.96765 0.94878 1.19794 0.92291 0.84047 0.94085 1.87039 1.86774 1.19735 1.29141 1.23351 0.97477 0.98402 0.76941 1.22217 0.93700 1.01950 1.03754 1.21881 1.00596 0.92732 1.04221 1.21966 1.02490 0.89835 0.97830 0.89828 0.93223 0.96478 0.91923 0.84038 0.80729 0.80364 0.86782 0.92751 0.93557 0.91941 0.92525 0.86488 0.85300 0.87228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.82 9.33 71.98 0.67 -7.15 16 2 C 0.22 13.06 2.56 29.85 0.08 13.14 16 3 H 0.00 0.03 7.16 -2.39 -0.02 0.02 16 4 C -0.55 -32.84 8.90 25.60 0.23 -32.62 16 5 H 0.07 4.06 7.81 -2.91 -0.02 4.04 16 6 C 0.01 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -55.10 11.32 21.45 0.24 -54.85 16 8 Si 0.99 44.21 29.54 68.60 2.03 46.24 16 9 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 O -0.36 -19.30 9.09 -56.64 -0.52 -19.81 16 13 C 0.49 24.91 7.86 70.24 0.55 25.46 16 14 O -0.55 -32.01 15.12 25.20 0.38 -31.62 16 15 C -0.18 -7.17 5.89 -19.94 -0.12 -7.29 16 16 C -0.04 -1.22 9.59 22.48 0.22 -1.01 16 17 C -0.15 -2.97 10.05 22.26 0.22 -2.74 16 18 C -0.02 -0.40 10.02 22.24 0.22 -0.17 16 19 C -0.19 -4.36 6.26 -19.54 -0.12 -4.48 16 20 C 0.15 5.05 6.60 23.02 0.15 5.21 16 21 O -0.31 -11.48 9.55 -76.83 -0.73 -12.21 16 22 C 0.07 1.69 1.26 -10.21 -0.01 1.68 16 23 C -0.16 -3.18 8.86 71.98 0.64 -2.54 16 24 C -0.14 -2.40 8.95 71.98 0.64 -1.75 16 25 C -0.08 -1.34 6.18 30.74 0.19 -1.15 16 26 H 0.08 4.93 6.07 -2.39 -0.01 4.91 16 27 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 30 H 0.14 4.36 7.59 -2.91 -0.02 4.34 16 31 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 32 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.07 8.07 -2.39 -0.02 1.05 16 36 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 37 H 0.06 1.13 8.14 -2.38 -0.02 1.12 16 38 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16 39 H 0.13 1.12 7.92 -2.39 -0.02 1.10 16 40 H 0.11 1.39 7.93 -2.39 -0.02 1.37 16 Total: -1.00 -81.61 337.53 6.44 -75.16 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: 1.03 Total: 11.25 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 4.01 Total: -14.14 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: 0.24 Total: -54.85 kcal Atomic # 8 Polarization: -62.78 SS G_CDS: -0.87 Total: -63.65 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -81.61 6.44 -75.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847648246.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.396 kcal (2) G-P(sol) polarization free energy of solvation -81.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds