Wall clock time and date at job start Tue Mar 31 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 C 1.52999 * 109.47241 * 239.99652 * 2 1 3 5 5 C 1.50704 * 109.46903 * 119.99630 * 2 1 3 6 6 O 1.20767 * 120.00011 * 0.02562 * 5 2 1 7 7 C 1.50697 * 119.99896 * 179.97438 * 5 2 1 8 8 O 1.45201 * 109.46944 * 180.02562 * 7 5 2 9 9 C 1.34804 * 116.99925 * 180.02562 * 8 7 5 10 10 O 1.21526 * 120.00158 * 359.97438 * 9 8 7 11 11 C 1.47288 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.39296 * 120.28603 * 354.83939 * 11 9 8 13 13 C 1.38205 * 120.08627 * 180.27692 * 12 11 9 14 14 C 1.38842 * 120.68093 * 359.73704 * 13 12 11 15 15 C 1.37598 * 120.58324 * 0.02562 * 14 13 12 16 16 C 1.40704 * 119.88666 * 359.97438 * 15 14 13 17 17 C 1.40861 * 120.33324 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99927 * 145.74293 * 17 16 15 19 19 C 1.40300 * 119.99911 * 325.74837 * 17 16 15 20 20 N 1.30607 * 120.00073 * 339.67884 * 19 17 16 21 21 Si 1.86802 * 119.99707 * 159.67918 * 19 17 16 22 22 H 1.48501 * 109.47219 * 269.99694 * 21 19 17 23 23 H 1.48499 * 109.47589 * 29.99913 * 21 19 17 24 24 H 1.48504 * 109.46697 * 149.99901 * 21 19 17 25 25 H 1.08999 * 109.47154 * 300.00268 * 1 2 3 26 26 H 1.08994 * 109.46761 * 60.00097 * 1 2 3 27 27 H 1.09002 * 109.46760 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47001 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46536 * 299.99965 * 3 2 1 30 30 H 1.09005 * 109.47045 * 59.99439 * 3 2 1 31 31 H 1.09004 * 109.47070 * 300.00196 * 4 2 1 32 32 H 1.08995 * 109.46699 * 60.00002 * 4 2 1 33 33 H 1.08997 * 109.47154 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46912 * 60.00424 * 7 5 2 35 35 H 1.09000 * 109.47278 * 299.99936 * 7 5 2 36 36 H 1.08000 * 119.95653 * 0.02562 * 12 11 9 37 37 H 1.07997 * 119.65882 * 179.75950 * 13 12 11 38 38 H 1.07994 * 119.70815 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.05477 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99997 * 355.29575 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2306 6 8 1.2476 -1.1697 2.0253 7 6 3.5140 -0.8485 1.4688 8 8 3.7396 -1.5661 2.7108 9 6 5.0212 -1.7750 3.0727 10 8 5.9252 -1.3690 2.3692 11 6 5.3260 -2.4964 4.3202 12 6 4.2993 -2.8711 5.1838 13 6 4.5905 -3.5428 6.3560 14 6 5.9021 -3.8568 6.6855 15 6 6.9374 -3.5043 5.8504 16 6 6.6685 -2.8199 4.6508 17 6 7.7211 -2.4540 3.7892 18 1 7.5691 -2.4555 2.7199 19 6 8.9671 -2.0878 4.3201 20 7 9.0586 -1.7009 5.5642 21 14 10.4950 -2.1534 3.2475 22 1 11.1208 -3.4955 3.3589 23 1 10.1188 -1.8985 1.8337 24 1 11.4602 -1.1183 3.6972 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7217 -1.2489 34 1 3.9654 0.1414 1.5335 35 1 3.9647 -1.4003 0.6438 36 1 3.2747 -2.6329 4.9389 37 1 3.7894 -3.8266 7.0224 38 1 6.1118 -4.3825 7.6053 39 1 7.9544 -3.7533 6.1149 40 1 8.2571 -1.6013 6.1013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849211004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:07 Heat of formation + Delta-G solvation = -123.836861 kcal Electronic energy + Delta-G solvation = -22857.248829 eV Core-core repulsion = 19408.315716 eV Total energy + Delta-G solvation = -3448.933113 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.25160 -39.19210 -37.44944 -35.91633 -35.31615 -33.98890 -30.41822 -29.54583 -28.96343 -27.62590 -27.09178 -25.40826 -23.36523 -22.25076 -21.06820 -19.89503 -18.59237 -17.99701 -16.89438 -16.23354 -16.06587 -15.80621 -14.93543 -14.82564 -14.59703 -14.21094 -13.96197 -13.86787 -13.62459 -13.04854 -12.69805 -12.50667 -12.47474 -12.33733 -12.32505 -12.04576 -11.94591 -11.74426 -11.23554 -11.21302 -11.11937 -10.98940 -10.77505 -10.45592 -10.25257 -10.11072 -9.83706 -9.48936 -9.16517 -8.92142 -7.88307 -7.70422 -7.29512 -4.60717 1.89306 2.05684 2.69817 3.08878 3.13224 3.24753 3.34331 3.73316 3.95249 4.12272 4.44202 4.51544 4.57736 4.70650 5.21566 5.26797 5.31046 5.33702 5.36605 5.36710 5.48218 5.56134 5.59516 5.67769 5.84956 5.93769 5.95975 6.01311 6.04229 6.17921 6.41401 6.71532 6.89650 7.10188 7.26527 7.44561 7.45911 7.53718 7.70178 7.78363 8.02736 8.10923 8.58341 8.70258 8.94047 9.91382 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.004355 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.251736 B = 6428.430044 C = 7683.836579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C -0.143 4.143 4 C -0.142 4.142 5 C 0.363 3.637 6 O -0.427 6.427 7 C 0.017 3.983 8 O -0.353 6.353 9 C 0.503 3.497 10 O -0.514 6.514 11 C -0.255 4.255 12 C -0.022 4.022 13 C -0.260 4.260 14 C -0.069 4.069 15 C -0.201 4.201 16 C 0.123 3.877 17 C -0.466 4.466 18 H 0.105 0.895 19 C 0.032 3.968 20 N -0.785 5.785 21 Si 1.074 2.926 22 H -0.273 1.273 23 H -0.272 1.272 24 H -0.275 1.275 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 3.694 -10.077 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.110 4.110 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.236 3.764 6 O -0.297 6.297 7 C -0.058 4.058 8 O -0.272 6.272 9 C 0.354 3.646 10 O -0.405 6.405 11 C -0.258 4.258 12 C -0.040 4.040 13 C -0.279 4.279 14 C -0.088 4.088 15 C -0.220 4.220 16 C 0.119 3.881 17 C -0.493 4.493 18 H 0.122 0.878 19 C -0.191 4.191 20 N -0.407 5.407 21 Si 0.896 3.104 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.200 1.200 25 H 0.080 0.920 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.124 0.876 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.127 0.873 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.825 3.832 -9.798 13.112 hybrid contribution -1.636 -0.133 -0.020 1.642 sum -9.461 3.699 -9.818 14.128 Atomic orbital electron populations 1.21720 0.92249 1.02837 1.02222 1.21138 0.97940 0.97173 0.94717 1.21892 1.01887 0.93230 1.02973 1.21890 1.01876 1.00512 0.95687 1.24545 0.89826 0.76219 0.85860 1.90407 1.58509 1.36913 1.43849 1.23142 0.95625 0.99000 0.88055 1.86696 1.31501 1.70271 1.38695 1.21428 0.78908 0.77865 0.86416 1.90737 1.45780 1.50220 1.53789 1.18649 0.94917 1.15679 0.96515 1.20967 0.97158 0.93091 0.92807 1.20346 0.95702 1.11926 0.99897 1.20818 0.93224 0.97378 0.97360 1.21197 0.98031 1.05101 0.97704 1.17462 0.90707 0.88751 0.91230 1.21229 0.95210 1.34954 0.97865 0.87759 1.27319 1.03012 0.91799 0.96935 1.70356 1.36439 1.26292 1.07652 0.83509 0.73425 0.78058 0.75372 1.19875 1.19710 1.19978 0.91958 0.91825 0.91956 0.91457 0.91147 0.91957 0.91963 0.91148 0.91465 0.88516 0.88529 0.87589 0.88495 0.88565 0.87270 0.88598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.26 7.77 37.16 0.29 -0.97 16 2 C -0.11 -1.09 0.87 -155.65 -0.14 -1.23 16 3 C -0.14 -1.20 8.26 37.16 0.31 -0.90 16 4 C -0.14 -1.19 8.26 37.16 0.31 -0.88 16 5 C 0.36 5.22 6.05 -29.03 -0.18 5.04 16 6 O -0.43 -7.59 16.12 -13.72 -0.22 -7.81 16 7 C 0.02 0.28 5.23 36.00 0.19 0.46 16 8 O -0.35 -7.51 9.02 -47.47 -0.43 -7.94 16 9 C 0.50 12.24 7.85 34.41 0.27 12.51 16 10 O -0.51 -13.21 13.38 -19.28 -0.26 -13.46 16 11 C -0.25 -6.48 5.92 -104.39 -0.62 -7.10 16 12 C -0.02 -0.50 9.60 -39.20 -0.38 -0.88 16 13 C -0.26 -5.66 10.03 -39.37 -0.39 -6.05 16 14 C -0.07 -1.53 10.01 -39.59 -0.40 -1.93 16 15 C -0.20 -4.97 7.90 -38.88 -0.31 -5.28 16 16 C 0.12 3.26 5.16 -106.53 -0.55 2.71 16 17 C -0.47 -12.54 7.62 -37.81 -0.29 -12.83 16 18 H 0.10 2.90 5.99 -52.48 -0.31 2.58 16 19 C 0.03 0.81 5.01 -17.30 -0.09 0.72 16 20 N -0.78 -20.50 12.60 55.57 0.70 -19.80 16 21 Si 1.07 21.73 29.98 -169.99 -5.10 16.63 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 24 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 25 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.63 8.10 -51.93 -0.42 0.21 16 28 H 0.07 0.56 7.28 -51.93 -0.38 0.18 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.55 7.28 -51.93 -0.38 0.17 16 34 H 0.10 1.45 7.37 -51.93 -0.38 1.06 16 35 H 0.10 1.43 7.37 -51.93 -0.38 1.05 16 36 H 0.11 2.29 7.61 -52.49 -0.40 1.89 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.11 2.71 6.99 -52.49 -0.37 2.34 16 40 H 0.30 8.05 6.62 -40.82 -0.27 7.78 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -30.45 337.50 -7.66 -38.11 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.47 Total: 5.80 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -1.97 Total: -16.61 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.70 Total: -19.80 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -0.91 Total: -29.22 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.10 Total: 16.63 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.45 -7.66 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849211004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.731 kcal (2) G-P(sol) polarization free energy of solvation -30.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds