Wall clock time and date at job start Tue Mar 31 2020 05:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53003 * 109.47183 * 2 1 4 4 C 1.52999 * 109.47241 * 239.99652 * 2 1 3 5 5 C 1.50704 * 109.46903 * 119.99630 * 2 1 3 6 6 O 1.20767 * 120.00011 * 0.02562 * 5 2 1 7 7 C 1.50697 * 119.99896 * 179.97438 * 5 2 1 8 8 O 1.45201 * 109.46944 * 180.02562 * 7 5 2 9 9 C 1.34804 * 116.99925 * 180.02562 * 8 7 5 10 10 O 1.21526 * 120.00158 * 359.97438 * 9 8 7 11 11 C 1.47288 * 120.00213 * 180.02562 * 9 8 7 12 12 C 1.39296 * 120.28603 * 354.83939 * 11 9 8 13 13 C 1.38205 * 120.08627 * 180.27692 * 12 11 9 14 14 C 1.38842 * 120.68093 * 359.73704 * 13 12 11 15 15 C 1.37598 * 120.58324 * 0.02562 * 14 13 12 16 16 C 1.40704 * 119.88666 * 359.97438 * 15 14 13 17 17 C 1.40861 * 120.33324 * 179.97438 * 16 15 14 18 18 H 1.08006 * 119.99927 * 145.74293 * 17 16 15 19 19 C 1.40300 * 119.99911 * 325.74837 * 17 16 15 20 20 N 1.30607 * 120.00073 * 339.67884 * 19 17 16 21 21 Si 1.86802 * 119.99707 * 159.67918 * 19 17 16 22 22 H 1.48501 * 109.47219 * 269.99694 * 21 19 17 23 23 H 1.48499 * 109.47589 * 29.99913 * 21 19 17 24 24 H 1.48504 * 109.46697 * 149.99901 * 21 19 17 25 25 H 1.08999 * 109.47154 * 300.00268 * 1 2 3 26 26 H 1.08994 * 109.46761 * 60.00097 * 1 2 3 27 27 H 1.09002 * 109.46760 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47001 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46536 * 299.99965 * 3 2 1 30 30 H 1.09005 * 109.47045 * 59.99439 * 3 2 1 31 31 H 1.09004 * 109.47070 * 300.00196 * 4 2 1 32 32 H 1.08995 * 109.46699 * 60.00002 * 4 2 1 33 33 H 1.08997 * 109.47154 * 180.02562 * 4 2 1 34 34 H 1.08999 * 109.46912 * 60.00424 * 7 5 2 35 35 H 1.09000 * 109.47278 * 299.99936 * 7 5 2 36 36 H 1.08000 * 119.95653 * 0.02562 * 12 11 9 37 37 H 1.07997 * 119.65882 * 179.75950 * 13 12 11 38 38 H 1.07994 * 119.70815 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.05477 * 180.02562 * 15 14 13 40 40 H 0.97001 * 119.99997 * 355.29575 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2306 6 8 1.2476 -1.1697 2.0253 7 6 3.5140 -0.8485 1.4688 8 8 3.7396 -1.5661 2.7108 9 6 5.0212 -1.7750 3.0727 10 8 5.9252 -1.3690 2.3692 11 6 5.3260 -2.4964 4.3202 12 6 4.2993 -2.8711 5.1838 13 6 4.5905 -3.5428 6.3560 14 6 5.9021 -3.8568 6.6855 15 6 6.9374 -3.5043 5.8504 16 6 6.6685 -2.8199 4.6508 17 6 7.7211 -2.4540 3.7892 18 1 7.5691 -2.4555 2.7199 19 6 8.9671 -2.0878 4.3201 20 7 9.0586 -1.7009 5.5642 21 14 10.4950 -2.1534 3.2475 22 1 11.1208 -3.4955 3.3589 23 1 10.1188 -1.8985 1.8337 24 1 11.4602 -1.1183 3.6972 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1391 33 1 3.1301 -0.7217 -1.2489 34 1 3.9654 0.1414 1.5335 35 1 3.9647 -1.4003 0.6438 36 1 3.2747 -2.6329 4.9389 37 1 3.7894 -3.8266 7.0224 38 1 6.1118 -4.3825 7.6053 39 1 7.9544 -3.7533 6.1149 40 1 8.2571 -1.6013 6.1013 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849211004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:07 Heat of formation + Delta-G solvation = -138.619109 kcal Electronic energy + Delta-G solvation = -22857.889836 eV Core-core repulsion = 19408.315716 eV Total energy + Delta-G solvation = -3449.574120 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.65574 -40.78339 -39.27055 -37.16557 -36.81782 -35.87175 -32.22190 -31.40262 -30.32399 -28.28832 -27.94200 -27.27886 -24.94448 -23.62127 -22.91438 -21.68252 -20.06023 -19.51811 -18.56634 -17.77822 -17.58734 -16.97969 -16.65144 -16.18630 -16.10436 -15.86535 -15.55745 -14.86988 -14.83996 -14.66289 -14.40308 -14.03510 -13.78022 -13.56742 -13.24451 -13.12116 -13.04746 -12.99614 -12.75231 -12.66882 -12.54232 -12.12716 -11.98677 -11.97112 -11.88731 -11.74640 -11.64604 -11.02154 -10.91088 -10.57548 -9.77497 -9.61650 -9.24953 -6.60094 0.16150 0.72539 0.83777 1.47834 1.59942 1.63072 1.78358 1.85180 2.28116 2.63414 2.86738 3.41461 3.59008 3.78967 3.86606 4.04505 4.05117 4.18236 4.24360 4.32318 4.40244 4.65590 4.68757 4.70262 4.78845 4.84103 4.90199 4.90287 4.96901 5.00984 5.17898 5.25244 5.29045 5.31104 5.39997 5.55747 5.63418 5.77134 5.87340 6.10310 6.21512 6.29580 6.64628 6.74329 7.07581 7.93405 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.004355 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.251736 B = 6428.430044 C = 7683.836579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.100 4.100 3 C -0.143 4.143 4 C -0.143 4.143 5 C 0.370 3.630 6 O -0.467 6.467 7 C 0.003 3.997 8 O -0.360 6.360 9 C 0.503 3.497 10 O -0.536 6.536 11 C -0.281 4.281 12 C -0.029 4.029 13 C -0.246 4.246 14 C -0.061 4.061 15 C -0.220 4.220 16 C 0.101 3.899 17 C -0.502 4.502 18 H 0.086 0.914 19 C 0.002 3.998 20 N -0.802 5.802 21 Si 1.120 2.880 22 H -0.254 1.254 23 H -0.270 1.270 24 H -0.266 1.266 25 H 0.050 0.950 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.119 0.881 37 H 0.135 0.865 38 H 0.134 0.866 39 H 0.101 0.899 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.229 3.877 -10.907 15.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.101 4.101 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.245 3.755 6 O -0.340 6.340 7 C -0.071 4.071 8 O -0.278 6.278 9 C 0.355 3.645 10 O -0.429 6.429 11 C -0.284 4.284 12 C -0.048 4.048 13 C -0.265 4.265 14 C -0.079 4.079 15 C -0.239 4.239 16 C 0.098 3.902 17 C -0.529 4.529 18 H 0.103 0.897 19 C -0.216 4.216 20 N -0.425 5.425 21 Si 0.936 3.064 22 H -0.178 1.178 23 H -0.194 1.194 24 H -0.191 1.191 25 H 0.069 0.931 26 H 0.112 0.888 27 H 0.070 0.930 28 H 0.086 0.914 29 H 0.117 0.883 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.153 0.847 38 H 0.151 0.849 39 H 0.119 0.881 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.792 4.012 -10.625 14.362 hybrid contribution -1.583 -0.199 0.260 1.616 sum -10.374 3.813 -10.365 15.152 Atomic orbital electron populations 1.21746 0.91524 1.02470 1.03165 1.21186 0.98398 0.97724 0.92787 1.21948 1.01957 0.91968 1.04118 1.21945 1.01971 1.00389 0.95655 1.25094 0.88287 0.75314 0.86789 1.90397 1.58936 1.38994 1.45637 1.23671 0.97837 0.99271 0.86348 1.86644 1.29540 1.70668 1.40996 1.21362 0.79598 0.77441 0.86122 1.90709 1.46683 1.51035 1.54438 1.19041 0.95394 1.16229 0.97751 1.21197 0.97276 0.93231 0.93072 1.20823 0.96621 1.09658 0.99405 1.21229 0.92684 0.96088 0.97914 1.21222 0.98542 1.06053 0.98101 1.17823 0.91320 0.88933 0.92156 1.21220 0.96766 1.37867 0.97059 0.89651 1.28600 1.05316 0.90271 0.97380 1.70466 1.35404 1.28350 1.08286 0.82968 0.70430 0.79197 0.73789 1.17840 1.19446 1.19058 0.93085 0.88776 0.93033 0.91445 0.88324 0.92555 0.92483 0.88338 0.91414 0.87338 0.87179 0.86278 0.84679 0.84850 0.88128 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.24 7.77 71.98 0.56 -1.69 16 2 C -0.10 -1.83 0.87 -52.92 -0.05 -1.88 16 3 C -0.14 -2.07 8.26 71.98 0.59 -1.48 16 4 C -0.14 -2.04 8.26 71.98 0.59 -1.44 16 5 C 0.37 10.49 6.05 29.10 0.18 10.67 16 6 O -0.47 -16.74 16.12 17.38 0.28 -16.46 16 7 C 0.00 0.10 5.23 71.23 0.37 0.47 16 8 O -0.36 -15.59 9.02 -50.75 -0.46 -16.05 16 9 C 0.50 25.18 7.85 70.20 0.55 25.73 16 10 O -0.54 -28.48 13.38 19.75 0.26 -28.22 16 11 C -0.28 -14.60 5.92 -19.71 -0.12 -14.72 16 12 C -0.03 -1.34 9.60 22.52 0.22 -1.12 16 13 C -0.25 -10.13 10.03 22.41 0.22 -9.90 16 14 C -0.06 -2.58 10.01 22.26 0.22 -2.36 16 15 C -0.22 -10.97 7.90 22.72 0.18 -10.79 16 16 C 0.10 5.54 5.16 -21.10 -0.11 5.43 16 17 C -0.50 -28.09 7.62 23.41 0.18 -27.91 16 18 H 0.09 4.98 5.99 -2.91 -0.02 4.97 16 19 C 0.00 0.08 5.01 85.38 0.43 0.51 16 20 N -0.80 -43.02 12.60 21.88 0.28 -42.74 16 21 Si 1.12 44.27 29.98 68.60 2.06 46.33 16 22 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 23 H -0.27 -10.42 7.11 99.48 0.71 -9.71 16 24 H -0.27 -10.05 7.11 99.48 0.71 -9.35 16 25 H 0.05 0.98 8.10 -2.39 -0.02 0.96 16 26 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 28 H 0.07 0.99 7.28 -2.39 -0.02 0.97 16 29 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 0.88 8.14 -2.38 -0.02 0.87 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.97 7.28 -2.39 -0.02 0.95 16 34 H 0.11 3.24 7.37 -2.39 -0.02 3.23 16 35 H 0.11 3.25 7.37 -2.39 -0.02 3.23 16 36 H 0.12 5.04 7.61 -2.91 -0.02 5.02 16 37 H 0.14 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 39 H 0.10 5.11 6.99 -2.91 -0.02 5.09 16 40 H 0.29 15.87 6.62 -92.71 -0.61 15.26 16 Total: -1.00 -68.50 337.50 7.64 -60.86 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 1.19 Total: 26.77 kcal Atomic # 6 Polarization: -34.52 SS G_CDS: 4.02 Total: -30.49 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.28 Total: -42.74 kcal Atomic # 8 Polarization: -60.81 SS G_CDS: 0.09 Total: -60.72 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.06 Total: 46.33 kcal Total: -68.50 7.64 -60.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849211004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.759 kcal (2) G-P(sol) polarization free energy of solvation -68.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds