Wall clock time and date at job start Tue Mar 31 2020 06:24:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20762 * 119.99961 * 2 1 4 4 C 1.50697 * 120.00749 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.46999 * 330.00109 * 4 2 1 6 6 C 1.52997 * 109.47276 * 89.99323 * 4 2 1 7 7 C 1.52990 * 109.47592 * 210.00167 * 4 2 1 8 8 C 1.52999 * 109.47403 * 174.99860 * 7 4 2 9 9 O 1.45198 * 109.47331 * 179.97438 * 8 7 4 10 10 C 1.34712 * 117.00128 * 180.02562 * 9 8 7 11 11 O 1.21466 * 119.99861 * 359.97438 * 10 9 8 12 12 C 1.47767 * 119.99861 * 179.97438 * 10 9 8 13 13 C 1.39961 * 120.03171 * 359.71952 * 12 10 9 14 14 C 1.38319 * 120.34970 * 179.74079 * 13 12 10 15 15 C 1.37762 * 120.42154 * 0.56061 * 14 13 12 16 16 C 1.40754 * 120.04820 * 359.69809 * 15 14 13 17 17 C 1.41431 * 120.17410 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00243 * 24.44124 * 17 16 15 19 19 C 1.39942 * 119.99793 * 204.44242 * 17 16 15 20 20 N 1.30827 * 120.00324 * 17.87970 * 19 17 16 21 21 Si 1.86805 * 119.99877 * 197.88261 * 19 17 16 22 22 H 1.48499 * 109.47040 * 89.99678 * 21 19 17 23 23 H 1.48494 * 109.47183 * 209.99818 * 21 19 17 24 24 H 1.48501 * 109.47063 * 329.99853 * 21 19 17 25 25 C 1.39054 * 120.02574 * 179.97438 * 12 10 9 26 26 H 1.09004 * 109.46867 * 269.99267 * 1 2 3 27 27 H 1.08990 * 109.47257 * 29.99646 * 1 2 3 28 28 H 1.08999 * 109.47021 * 150.00288 * 1 2 3 29 29 H 1.09000 * 109.47277 * 300.00662 * 6 4 2 30 30 H 1.09002 * 109.47554 * 180.02562 * 6 4 2 31 31 H 1.09005 * 109.47100 * 60.00853 * 6 4 2 32 32 H 1.09001 * 109.47057 * 294.99508 * 7 4 2 33 33 H 1.08999 * 109.47442 * 54.99374 * 7 4 2 34 34 H 1.09005 * 109.47392 * 299.99564 * 8 7 4 35 35 H 1.08999 * 109.47218 * 59.99377 * 8 7 4 36 36 H 1.08002 * 119.82483 * 0.02562 * 13 12 10 37 37 H 1.08003 * 119.79082 * 180.28390 * 14 13 12 38 38 H 1.07992 * 119.97278 * 179.71852 * 15 14 13 39 39 H 0.96994 * 120.00189 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.20762 * 359.95870 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 -0.0006 5 1 1.6716 -2.0649 0.5129 6 6 2.5156 -1.7461 -1.4432 7 6 3.5974 -1.1223 0.7207 8 6 4.3069 -2.4735 0.8299 9 8 5.5758 -2.3000 1.5139 10 6 6.3300 -3.4018 1.6925 11 8 5.9381 -4.4781 1.2883 12 6 7.6341 -3.3011 2.3801 13 6 8.0889 -2.0603 2.8409 14 6 9.3061 -1.9592 3.4902 15 6 10.0899 -3.0760 3.6807 16 6 9.6517 -4.3316 3.2195 17 6 10.4540 -5.4800 3.4141 18 1 11.1737 -5.5059 4.2189 19 6 10.3152 -6.5827 2.5638 20 7 9.7241 -6.4449 1.4049 21 14 10.9740 -8.2517 3.0836 22 1 9.9165 -8.9957 3.8139 23 1 11.3789 -9.0209 1.8796 24 1 12.1504 -8.0652 3.9705 25 6 8.4128 -4.4382 2.5652 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.5631 -1.8762 -1.9571 30 1 3.0603 -2.6902 -1.4437 31 1 3.1046 -0.9862 -1.9568 32 1 4.2220 -0.4285 0.1581 33 1 3.4199 -0.7234 1.7194 34 1 3.6824 -3.1674 1.3926 35 1 4.4844 -2.8724 -0.1688 36 1 7.4843 -1.1777 2.6929 37 1 9.6463 -0.9980 3.8461 38 1 11.0410 -2.9881 4.1845 39 1 9.6276 -7.2093 0.8157 40 1 8.0675 -5.3972 2.2083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849695633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:04 Heat of formation + Delta-G solvation = -127.035144 kcal Electronic energy + Delta-G solvation = -21957.490983 eV Core-core repulsion = 18508.419182 eV Total energy + Delta-G solvation = -3449.071801 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09626 -39.63097 -37.43388 -36.15579 -34.91496 -33.75696 -30.93744 -30.29870 -29.51935 -28.78593 -25.59187 -25.21024 -23.18990 -21.58978 -20.98685 -19.92995 -19.31485 -17.83478 -16.77308 -16.34516 -16.04203 -15.75935 -15.36238 -15.30858 -14.91860 -14.61787 -14.27418 -13.52054 -13.44621 -13.26514 -13.04149 -12.79143 -12.61952 -12.40464 -12.37133 -12.13889 -11.70576 -11.62140 -11.29258 -11.19483 -11.14664 -11.09969 -10.75969 -10.53263 -10.20365 -10.17076 -9.79412 -9.73278 -9.46527 -9.25778 -7.75427 -7.56849 -6.84249 -4.45072 1.66941 1.97319 2.76896 3.05538 3.08801 3.12522 3.12855 3.59400 3.78068 3.89023 4.45190 4.56351 4.64814 4.70277 4.91141 5.01348 5.12508 5.16874 5.19823 5.39333 5.40263 5.52581 5.53384 5.64912 5.73354 5.81142 5.98243 6.05996 6.14737 6.40527 6.63522 6.92367 6.94510 6.98729 7.15878 7.22347 7.30204 7.67489 7.74670 7.89809 8.09198 8.43076 8.55202 8.75695 8.77810 10.11143 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.002969 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.000421 B = 9429.377308 C =10220.521426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.361 3.639 3 O -0.453 6.453 4 C -0.138 4.138 5 H 0.100 0.900 6 C -0.146 4.146 7 C -0.109 4.109 8 C 0.066 3.934 9 O -0.356 6.356 10 C 0.512 3.488 11 O -0.519 6.519 12 C -0.115 4.115 13 C -0.193 4.193 14 C -0.104 4.104 15 C -0.201 4.201 16 C 0.095 3.905 17 C -0.460 4.460 18 H 0.083 0.917 19 C 0.073 3.927 20 N -0.787 5.787 21 Si 0.912 3.088 22 H -0.266 1.266 23 H -0.277 1.277 24 H -0.261 1.261 25 C -0.090 4.090 26 H 0.097 0.903 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.285 0.715 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 6.297 -3.343 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.235 3.765 3 O -0.326 6.326 4 C -0.158 4.158 5 H 0.118 0.882 6 C -0.203 4.203 7 C -0.146 4.146 8 C -0.008 4.008 9 O -0.273 6.273 10 C 0.359 3.641 11 O -0.409 6.409 12 C -0.117 4.117 13 C -0.213 4.213 14 C -0.122 4.122 15 C -0.221 4.221 16 C 0.092 3.908 17 C -0.489 4.489 18 H 0.101 0.899 19 C -0.146 4.146 20 N -0.411 5.411 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.185 1.185 25 C -0.109 4.109 26 H 0.115 0.885 27 H 0.103 0.897 28 H 0.104 0.896 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.096 0.904 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.667 6.413 -3.713 16.432 hybrid contribution 0.068 -0.962 0.019 0.964 sum -14.599 5.451 -3.693 16.015 Atomic orbital electron populations 1.22311 0.94304 1.04774 1.04751 1.24596 0.91899 0.89937 0.70025 1.90429 1.72026 1.35029 1.35114 1.21677 0.97362 0.97622 0.99108 0.88179 1.21798 1.02482 1.02731 0.93302 1.21415 0.94451 0.96903 1.01837 1.22921 0.83183 0.97474 0.97254 1.86588 1.31105 1.38141 1.71483 1.21880 0.84919 0.81033 0.76219 1.90752 1.72476 1.29141 1.48517 1.18839 0.91389 0.96293 1.05157 1.20578 0.98505 0.95489 1.06723 1.20519 0.94778 0.97210 0.99706 1.21189 0.99715 0.92515 1.08690 1.17548 0.90842 0.92255 0.90118 1.19575 1.18730 0.97677 1.12914 0.89913 1.25972 0.93797 1.01166 0.93663 1.69780 1.32264 1.32772 1.06323 0.86249 0.80014 0.80967 0.79176 1.19149 1.20221 1.18530 1.21661 0.92903 0.96819 0.99521 0.88504 0.89736 0.89571 0.91858 0.90702 0.91737 0.89771 0.90558 0.91582 0.91251 0.87841 0.88506 0.88325 0.90424 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 10.24 36.00 0.37 -0.75 16 2 C 0.36 3.28 6.32 -29.04 -0.18 3.10 16 3 O -0.45 -5.96 17.02 6.00 0.10 -5.86 16 4 C -0.14 -1.20 2.65 -91.78 -0.24 -1.44 16 5 H 0.10 0.66 8.12 -51.93 -0.42 0.24 16 6 C -0.15 -1.17 8.93 37.16 0.33 -0.84 16 7 C -0.11 -1.29 4.57 -26.74 -0.12 -1.41 16 8 C 0.07 0.96 5.23 37.16 0.19 1.16 16 9 O -0.36 -6.79 9.46 -40.52 -0.38 -7.18 16 10 C 0.51 11.62 7.90 34.63 0.27 11.89 16 11 O -0.52 -12.66 16.12 -19.24 -0.31 -12.97 16 12 C -0.12 -2.81 5.87 -105.05 -0.62 -3.43 16 13 C -0.19 -4.32 9.62 -38.91 -0.37 -4.69 16 14 C -0.10 -2.26 10.01 -39.73 -0.40 -2.66 16 15 C -0.20 -4.77 9.78 -38.81 -0.38 -5.15 16 16 C 0.09 2.49 5.57 -106.87 -0.60 1.90 16 17 C -0.46 -11.95 9.05 -37.73 -0.34 -12.29 16 18 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 19 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 20 N -0.79 -20.59 10.96 55.55 0.61 -19.98 16 21 Si 0.91 18.55 29.60 -169.99 -5.03 13.52 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 23 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 25 C -0.09 -2.38 8.24 -38.42 -0.32 -2.70 16 26 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.30 8.12 -51.93 -0.42 -0.12 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.63 6.57 -51.93 -0.34 0.29 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.10 8.02 -51.93 -0.42 0.68 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.99 6.56 -51.93 -0.34 0.65 16 36 H 0.10 2.09 7.59 -52.49 -0.40 1.70 16 37 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 39 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 40 H 0.14 3.83 5.74 -52.49 -0.30 3.53 16 LS Contribution 345.47 15.07 5.21 5.21 Total: -1.00 -30.59 345.47 -7.87 -38.47 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -5.57 Total: 4.38 kcal Atomic # 6 Polarization: -13.09 SS G_CDS: -2.49 Total: -15.58 kcal Atomic # 7 Polarization: -20.59 SS G_CDS: 0.61 Total: -19.98 kcal Atomic # 8 Polarization: -25.41 SS G_CDS: -0.59 Total: -26.00 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.03 Total: 13.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.59 -7.87 -38.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849695633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.570 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds