Wall clock time and date at job start Tue Mar 31 2020 06:24:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20762 * 119.99961 * 2 1 4 4 C 1.50697 * 120.00749 * 180.02562 * 2 1 3 5 5 H 1.09003 * 109.46999 * 330.00109 * 4 2 1 6 6 C 1.52997 * 109.47276 * 89.99323 * 4 2 1 7 7 C 1.52990 * 109.47592 * 210.00167 * 4 2 1 8 8 C 1.52999 * 109.47403 * 174.99860 * 7 4 2 9 9 O 1.45198 * 109.47331 * 179.97438 * 8 7 4 10 10 C 1.34712 * 117.00128 * 180.02562 * 9 8 7 11 11 O 1.21466 * 119.99861 * 359.97438 * 10 9 8 12 12 C 1.47767 * 119.99861 * 179.97438 * 10 9 8 13 13 C 1.39961 * 120.03171 * 359.71952 * 12 10 9 14 14 C 1.38319 * 120.34970 * 179.74079 * 13 12 10 15 15 C 1.37762 * 120.42154 * 0.56061 * 14 13 12 16 16 C 1.40754 * 120.04820 * 359.69809 * 15 14 13 17 17 C 1.41431 * 120.17410 * 180.02562 * 16 15 14 18 18 H 1.07994 * 120.00243 * 24.44124 * 17 16 15 19 19 C 1.39942 * 119.99793 * 204.44242 * 17 16 15 20 20 N 1.30827 * 120.00324 * 17.87970 * 19 17 16 21 21 Si 1.86805 * 119.99877 * 197.88261 * 19 17 16 22 22 H 1.48499 * 109.47040 * 89.99678 * 21 19 17 23 23 H 1.48494 * 109.47183 * 209.99818 * 21 19 17 24 24 H 1.48501 * 109.47063 * 329.99853 * 21 19 17 25 25 C 1.39054 * 120.02574 * 179.97438 * 12 10 9 26 26 H 1.09004 * 109.46867 * 269.99267 * 1 2 3 27 27 H 1.08990 * 109.47257 * 29.99646 * 1 2 3 28 28 H 1.08999 * 109.47021 * 150.00288 * 1 2 3 29 29 H 1.09000 * 109.47277 * 300.00662 * 6 4 2 30 30 H 1.09002 * 109.47554 * 180.02562 * 6 4 2 31 31 H 1.09005 * 109.47100 * 60.00853 * 6 4 2 32 32 H 1.09001 * 109.47057 * 294.99508 * 7 4 2 33 33 H 1.08999 * 109.47442 * 54.99374 * 7 4 2 34 34 H 1.09005 * 109.47392 * 299.99564 * 8 7 4 35 35 H 1.08999 * 109.47218 * 59.99377 * 8 7 4 36 36 H 1.08002 * 119.82483 * 0.02562 * 13 12 10 37 37 H 1.08003 * 119.79082 * 180.28390 * 14 13 12 38 38 H 1.07992 * 119.97278 * 179.71852 * 15 14 13 39 39 H 0.96994 * 120.00189 * 180.02562 * 20 19 17 40 40 H 1.07997 * 120.20762 * 359.95870 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3050 -0.0006 5 1 1.6716 -2.0649 0.5129 6 6 2.5156 -1.7461 -1.4432 7 6 3.5974 -1.1223 0.7207 8 6 4.3069 -2.4735 0.8299 9 8 5.5758 -2.3000 1.5139 10 6 6.3300 -3.4018 1.6925 11 8 5.9381 -4.4781 1.2883 12 6 7.6341 -3.3011 2.3801 13 6 8.0889 -2.0603 2.8409 14 6 9.3061 -1.9592 3.4902 15 6 10.0899 -3.0760 3.6807 16 6 9.6517 -4.3316 3.2195 17 6 10.4540 -5.4800 3.4141 18 1 11.1737 -5.5059 4.2189 19 6 10.3152 -6.5827 2.5638 20 7 9.7241 -6.4449 1.4049 21 14 10.9740 -8.2517 3.0836 22 1 9.9165 -8.9957 3.8139 23 1 11.3789 -9.0209 1.8796 24 1 12.1504 -8.0652 3.9705 25 6 8.4128 -4.4382 2.5652 26 1 -0.3633 -0.0001 1.0277 27 1 -0.3633 0.8899 -0.5137 28 1 -0.3633 -0.8900 -0.5138 29 1 1.5631 -1.8762 -1.9571 30 1 3.0603 -2.6902 -1.4437 31 1 3.1046 -0.9862 -1.9568 32 1 4.2220 -0.4285 0.1581 33 1 3.4199 -0.7234 1.7194 34 1 3.6824 -3.1674 1.3926 35 1 4.4844 -2.8724 -0.1688 36 1 7.4843 -1.1777 2.6929 37 1 9.6463 -0.9980 3.8461 38 1 11.0410 -2.9881 4.1845 39 1 9.6276 -7.2093 0.8157 40 1 8.0675 -5.3972 2.2083 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849695633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:03 Heat of formation + Delta-G solvation = -142.575108 kcal Electronic energy + Delta-G solvation = -21958.164847 eV Core-core repulsion = 18508.419182 eV Total energy + Delta-G solvation = -3449.745665 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50456 -40.71665 -39.22608 -37.67933 -36.00793 -35.60767 -32.34637 -31.47456 -31.33199 -29.66102 -27.32290 -26.34598 -24.75912 -22.89292 -22.59325 -21.59995 -20.17235 -19.60281 -18.26003 -17.80695 -17.62517 -16.99385 -16.60862 -16.42795 -16.19289 -16.05235 -15.34335 -15.20957 -15.05943 -14.41124 -14.36731 -14.13264 -13.76844 -13.54922 -13.29966 -13.04870 -12.98657 -12.95763 -12.84313 -12.64304 -12.56038 -12.23946 -12.19171 -12.03821 -12.00161 -11.55780 -11.51290 -11.30250 -11.10659 -10.51677 -9.63554 -9.46397 -8.69688 -6.40917 0.11240 0.95100 0.96409 1.37852 1.46196 1.52300 1.65834 1.78796 2.18921 2.70833 3.04522 3.61153 3.64107 3.76995 3.87227 4.04692 4.15801 4.22601 4.30441 4.41605 4.43284 4.61339 4.68347 4.69224 4.76274 4.82531 4.85165 4.88912 5.03748 5.06688 5.11726 5.19319 5.26620 5.27854 5.33203 5.43734 5.80171 5.88058 5.99711 6.21305 6.51617 6.54613 6.79503 6.85375 6.87569 8.27998 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027716 B = 0.002969 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.000421 B = 9429.377308 C =10220.521426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.364 3.636 3 O -0.503 6.503 4 C -0.136 4.136 5 H 0.130 0.870 6 C -0.146 4.146 7 C -0.101 4.101 8 C 0.060 3.940 9 O -0.354 6.354 10 C 0.516 3.484 11 O -0.544 6.544 12 C -0.130 4.130 13 C -0.184 4.184 14 C -0.099 4.099 15 C -0.204 4.204 16 C 0.065 3.935 17 C -0.493 4.493 18 H 0.088 0.912 19 C 0.030 3.970 20 N -0.826 5.826 21 Si 0.985 3.015 22 H -0.265 1.265 23 H -0.270 1.270 24 H -0.251 1.251 25 C -0.123 4.123 26 H 0.113 0.887 27 H 0.084 0.916 28 H 0.113 0.887 29 H 0.090 0.910 30 H 0.068 0.932 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.116 0.884 39 H 0.288 0.712 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.005 6.857 -2.903 17.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.243 3.757 3 O -0.379 6.379 4 C -0.155 4.155 5 H 0.148 0.852 6 C -0.204 4.204 7 C -0.139 4.139 8 C -0.013 4.013 9 O -0.271 6.271 10 C 0.364 3.636 11 O -0.436 6.436 12 C -0.131 4.131 13 C -0.203 4.203 14 C -0.117 4.117 15 C -0.224 4.224 16 C 0.063 3.937 17 C -0.522 4.522 18 H 0.106 0.894 19 C -0.185 4.185 20 N -0.451 5.451 21 Si 0.806 3.194 22 H -0.190 1.190 23 H -0.194 1.194 24 H -0.174 1.174 25 C -0.142 4.142 26 H 0.131 0.869 27 H 0.103 0.897 28 H 0.131 0.869 29 H 0.109 0.891 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.134 0.866 39 H 0.099 0.901 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -15.900 6.999 -3.271 17.677 hybrid contribution 0.350 -0.967 -0.136 1.037 sum -15.550 6.032 -3.406 17.023 Atomic orbital electron populations 1.22334 0.90982 1.06131 1.06106 1.25118 0.93649 0.88999 0.67973 1.90427 1.73263 1.36521 1.37678 1.21758 0.95780 0.98614 0.99389 0.85235 1.21812 1.03722 1.01833 0.92993 1.21383 0.95738 0.94691 1.02076 1.23316 0.81415 0.99544 0.97066 1.86549 1.32643 1.36377 1.71518 1.21654 0.84866 0.81381 0.75726 1.90728 1.73067 1.30265 1.49559 1.19101 0.92171 0.96566 1.05248 1.20939 0.98835 0.95358 1.05181 1.20958 0.93941 0.98424 0.98359 1.21501 1.00638 0.92218 1.08006 1.17920 0.91087 0.93745 0.90950 1.19870 1.19674 0.98847 1.13777 0.89381 1.26884 0.93714 1.04777 0.93175 1.69868 1.33758 1.33968 1.07529 0.85148 0.79505 0.75813 0.78962 1.18981 1.19438 1.17383 1.21479 0.94122 0.96609 1.02035 0.86911 0.89743 0.86890 0.89091 0.91268 0.93148 0.91409 0.90655 0.90449 0.91027 0.85309 0.84230 0.86603 0.90091 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.56 10.24 71.24 0.73 -0.83 16 2 C 0.36 5.97 6.32 29.10 0.18 6.16 16 3 O -0.50 -13.01 17.02 -1.46 -0.02 -13.04 16 4 C -0.14 -2.08 2.65 -11.54 -0.03 -2.11 16 5 H 0.13 1.26 8.12 -2.39 -0.02 1.24 16 6 C -0.15 -2.09 8.93 71.98 0.64 -1.45 16 7 C -0.10 -2.31 4.57 30.59 0.14 -2.17 16 8 C 0.06 1.70 5.23 71.98 0.38 2.08 16 9 O -0.35 -13.38 9.46 -56.22 -0.53 -13.91 16 10 C 0.52 23.73 7.90 70.34 0.56 24.28 16 11 O -0.54 -27.29 16.12 19.95 0.32 -26.96 16 12 C -0.13 -6.40 5.87 -20.14 -0.12 -6.52 16 13 C -0.18 -7.95 9.62 22.71 0.22 -7.73 16 14 C -0.10 -4.09 10.01 22.18 0.22 -3.87 16 15 C -0.20 -9.53 9.78 22.77 0.22 -9.30 16 16 C 0.07 3.51 5.57 -21.32 -0.12 3.40 16 17 C -0.49 -26.25 9.05 23.47 0.21 -26.04 16 18 H 0.09 4.40 7.91 -2.91 -0.02 4.38 16 19 C 0.03 1.51 5.14 85.26 0.44 1.95 16 20 N -0.83 -44.98 10.96 21.83 0.24 -44.75 16 21 Si 0.99 38.57 29.60 68.60 2.03 40.60 16 22 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 23 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 24 H -0.25 -9.26 7.11 99.48 0.71 -8.56 16 25 C -0.12 -6.78 8.24 23.02 0.19 -6.59 16 26 H 0.11 0.60 8.14 -2.38 -0.02 0.58 16 27 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.11 0.30 8.12 -2.39 -0.02 0.28 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.08 6.57 -2.39 -0.02 1.06 16 31 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 1.77 8.02 -2.39 -0.02 1.75 16 33 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.07 2.02 6.56 -2.39 -0.02 2.00 16 36 H 0.13 4.88 7.59 -2.91 -0.02 4.86 16 37 H 0.14 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 39 H 0.29 14.39 8.30 -92.71 -0.77 13.62 16 40 H 0.11 6.46 5.74 -2.91 -0.02 6.45 16 Total: -1.00 -69.51 345.47 6.94 -62.57 By element: Atomic # 1 Polarization: 23.18 SS G_CDS: 1.04 Total: 24.22 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.86 Total: -28.74 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.24 Total: -44.75 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.23 Total: -53.91 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -69.51 6.94 -62.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849695633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.004 kcal (2) G-P(sol) polarization free energy of solvation -69.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds