Wall clock time and date at job start Tue Mar 31 2020 05:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50704 * 119.99949 * 2 1 4 4 C 1.31002 * 120.00086 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99650 * 354.52116 * 4 2 1 6 6 C 1.53001 * 109.46785 * 121.70310 * 5 4 2 7 7 O 1.45202 * 109.47202 * 179.97438 * 6 5 4 8 8 C 1.34751 * 117.00005 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00314 * 0.02562 * 8 7 6 10 10 C 1.47394 * 119.99801 * 180.02562 * 8 7 6 11 11 C 1.39734 * 120.20533 * 0.02562 * 10 8 7 12 12 C 1.37798 * 119.91458 * 179.97438 * 11 10 8 13 13 C 1.38594 * 120.33516 * 0.02562 * 12 11 10 14 14 C 1.38020 * 120.41128 * 359.97438 * 13 12 11 15 15 C 1.38833 * 120.08085 * 359.97438 * 14 13 12 16 16 O 1.35498 * 120.16950 * 179.97438 * 15 14 13 17 17 C 1.34813 * 117.00092 * 354.01290 * 16 15 14 18 18 H 1.08004 * 119.99888 * 5.07381 * 17 16 15 19 19 C 1.38702 * 120.00502 * 185.06748 * 17 16 15 20 20 N 1.31518 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47333 * 60.00087 * 21 19 17 23 23 H 1.48499 * 109.47034 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47013 * 300.00097 * 21 19 17 25 25 H 1.09002 * 109.46991 * 264.50309 * 1 2 3 26 26 H 1.08999 * 109.47388 * 24.49793 * 1 2 3 27 27 H 1.08991 * 109.47061 * 144.50208 * 1 2 3 28 28 H 1.08999 * 109.47203 * 240.00038 * 3 2 1 29 29 H 1.09000 * 109.47133 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47047 * 120.00440 * 3 2 1 31 31 H 1.08002 * 119.99993 * 174.52499 * 4 2 1 32 32 H 1.09000 * 109.47357 * 1.70034 * 5 4 2 33 33 H 1.08996 * 109.46816 * 241.69729 * 5 4 2 34 34 H 1.09000 * 109.47398 * 59.99750 * 6 5 4 35 35 H 1.09003 * 109.47062 * 299.99998 * 6 5 4 36 36 H 1.08000 * 120.03732 * 0.25481 * 11 10 8 37 37 H 1.08003 * 119.83299 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.79467 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.96103 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00100 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4136 -2.4367 0.1235 6 6 1.7139 -3.3152 -1.0926 7 8 0.9933 -4.5701 -0.9729 8 6 1.1499 -5.4630 -1.9699 9 8 1.8693 -5.2004 -2.9133 10 6 0.4486 -6.7583 -1.9161 11 6 -0.3801 -7.0645 -0.8335 12 6 -1.0334 -8.2771 -0.7895 13 6 -0.8726 -9.1963 -1.8142 14 6 -0.0573 -8.9080 -2.8899 15 6 0.6081 -7.6911 -2.9523 16 8 1.4093 -7.4064 -4.0073 17 6 1.6170 -8.3932 -4.9020 18 1 1.0892 -9.3305 -4.8044 19 6 2.5084 -8.2050 -5.9478 20 7 3.1514 -7.0639 -6.0664 21 14 2.7955 -9.5722 -7.1879 22 1 1.5155 -9.9049 -7.8631 23 1 3.7868 -9.1236 -8.1985 24 1 3.3131 -10.7750 -6.4875 25 1 -0.3633 -0.0984 1.0230 26 1 -0.3634 0.9351 -0.4261 27 1 -0.3633 -0.8366 -0.5967 28 1 2.8872 1.3629 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2384 -1.1366 -0.0897 32 1 0.3431 -2.2373 0.1723 33 1 1.7290 -2.9519 1.0307 34 1 2.7844 -3.5146 -1.1414 35 1 1.3986 -2.7999 -1.9999 36 1 -0.5120 -6.3500 -0.0345 37 1 -1.6732 -8.5126 0.0481 38 1 -1.3884 -10.1442 -1.7706 39 1 0.0624 -9.6295 -3.6846 40 1 3.7751 -6.9323 -6.7976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849712000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:35 Heat of formation + Delta-G solvation = -81.239196 kcal Electronic energy + Delta-G solvation = -22192.470188 eV Core-core repulsion = 18745.384247 eV Total energy + Delta-G solvation = -3447.085940 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.80528 -38.67802 -37.18711 -36.41122 -35.44805 -32.41118 -31.83774 -30.52254 -28.97123 -27.98051 -26.50846 -25.44850 -23.56770 -22.10562 -21.46523 -20.18715 -18.08323 -18.05162 -17.36627 -16.52678 -16.11678 -15.72222 -14.97400 -14.67667 -14.48477 -14.25252 -14.15026 -13.91498 -13.78924 -13.57652 -13.02517 -12.71179 -12.60271 -12.48619 -12.09592 -11.79343 -11.76080 -11.56443 -11.47011 -11.27781 -11.11627 -10.91678 -10.83454 -10.77409 -10.50733 -9.96350 -9.74315 -9.25083 -8.92785 -8.81124 -8.32413 -7.38104 -6.50778 -4.10904 1.61136 1.99106 2.30710 3.08692 3.11105 3.13457 3.34727 3.48456 3.88958 4.55672 4.69018 4.80232 5.01266 5.06548 5.14002 5.20858 5.22462 5.35105 5.45534 5.52145 5.57956 5.58788 5.64996 5.68435 5.72423 5.80680 5.85912 5.97481 6.01916 6.12815 6.19427 6.55697 6.57528 6.65319 6.77671 6.89545 7.01848 7.12244 7.22968 7.31603 7.65731 7.87414 8.75644 8.89152 9.58432 10.62847 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.003694 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.908392 B = 7578.296090 C = 9107.441915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.130 4.130 3 C -0.117 4.117 4 C -0.162 4.162 5 C -0.093 4.093 6 C 0.074 3.926 7 O -0.369 6.369 8 C 0.497 3.503 9 O -0.477 6.477 10 C -0.216 4.216 11 C -0.016 4.016 12 C -0.235 4.235 13 C -0.044 4.044 14 C -0.239 4.239 15 C 0.191 3.809 16 O -0.125 6.125 17 C -0.404 4.404 18 H 0.096 0.904 19 C 0.045 3.955 20 N -0.832 5.832 21 Si 0.943 3.057 22 H -0.268 1.268 23 H -0.276 1.276 24 H -0.268 1.268 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.112 0.888 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.134 0.866 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 7.864 11.360 14.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.130 4.130 3 C -0.174 4.174 4 C -0.180 4.180 5 C -0.129 4.129 6 C -0.001 4.001 7 O -0.288 6.288 8 C 0.342 3.658 9 O -0.364 6.364 10 C -0.219 4.219 11 C -0.034 4.034 12 C -0.254 4.254 13 C -0.063 4.063 14 C -0.258 4.258 15 C 0.131 3.869 16 O -0.023 6.023 17 C -0.479 4.479 18 H 0.113 0.887 19 C -0.163 4.163 20 N -0.463 5.463 21 Si 0.767 3.233 22 H -0.193 1.193 23 H -0.201 1.201 24 H -0.193 1.193 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.130 0.870 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.130 0.870 39 H 0.152 0.848 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.228 8.326 10.785 14.265 hybrid contribution 0.277 -0.670 -0.705 1.011 sum -3.951 7.655 10.080 13.260 Atomic orbital electron populations 1.20953 0.92324 1.02582 1.02125 1.21642 0.95925 0.94988 1.00494 1.20831 0.99818 0.94680 1.02047 1.22435 0.99672 0.93076 1.02858 1.20709 1.01324 0.93026 0.97885 1.22787 0.96546 0.82190 0.98536 1.86477 1.67191 1.27133 1.47993 1.21081 0.80430 0.84191 0.80067 1.91000 1.35641 1.77058 1.32652 1.18051 1.10900 0.93759 0.99158 1.20961 0.91849 0.95787 0.94811 1.20539 1.07527 0.95985 1.01345 1.20964 0.94789 0.97764 0.92734 1.21107 1.04203 0.98660 1.01859 1.19239 0.89577 0.91413 0.86645 1.84143 1.53542 1.37623 1.27004 1.21487 1.26058 0.94968 1.05421 0.88698 1.25416 0.95088 0.98010 0.97806 1.70111 1.23281 1.22921 1.30006 0.85761 0.78787 0.79539 0.79242 1.19284 1.20103 1.19284 0.91499 0.92028 0.91083 0.91566 0.92060 0.91680 0.87020 0.90003 0.90021 0.91594 0.91629 0.85765 0.86990 0.86967 0.84845 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.97 36.01 0.32 -0.79 16 2 C -0.13 -1.30 6.05 -101.06 -0.61 -1.92 16 3 C -0.12 -0.96 10.04 36.01 0.36 -0.59 16 4 C -0.16 -1.79 9.15 -36.03 -0.33 -2.12 16 5 C -0.09 -1.12 5.76 -27.88 -0.16 -1.28 16 6 C 0.07 1.19 5.46 37.16 0.20 1.39 16 7 O -0.37 -7.01 9.47 -40.63 -0.38 -7.40 16 8 C 0.50 11.60 7.89 34.46 0.27 11.87 16 9 O -0.48 -13.19 14.96 -26.59 -0.40 -13.59 16 10 C -0.22 -4.90 5.89 -104.82 -0.62 -5.51 16 11 C -0.02 -0.29 9.61 -39.18 -0.38 -0.67 16 12 C -0.23 -3.95 10.02 -39.61 -0.40 -4.34 16 13 C -0.04 -0.77 10.03 -39.53 -0.40 -1.17 16 14 C -0.24 -5.11 9.16 -39.44 -0.36 -5.47 16 15 C 0.19 4.77 6.66 -38.57 -0.26 4.51 16 16 O -0.13 -3.68 7.84 -20.99 -0.16 -3.85 16 17 C -0.40 -11.33 9.49 30.90 0.29 -11.03 16 18 H 0.10 2.39 5.21 -52.48 -0.27 2.12 16 19 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 20 N -0.83 -24.86 13.67 55.48 0.76 -24.10 16 21 Si 0.94 20.27 29.55 -169.99 -5.02 15.25 16 22 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.49 7.94 -51.93 -0.41 0.08 16 27 H 0.07 0.70 6.53 -51.93 -0.34 0.36 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.43 7.87 -51.93 -0.41 0.03 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.11 1.17 8.05 -52.49 -0.42 0.75 16 32 H 0.08 0.94 5.54 -51.93 -0.29 0.65 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.12 1.96 7.61 -52.49 -0.40 1.56 16 37 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 39 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 40 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 344.14 15.07 5.19 5.19 Total: -1.00 -33.11 344.14 -7.53 -40.64 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -5.36 Total: 3.85 kcal Atomic # 6 Polarization: -13.83 SS G_CDS: -2.15 Total: -15.98 kcal Atomic # 7 Polarization: -24.86 SS G_CDS: 0.76 Total: -24.10 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -0.95 Total: -24.83 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.11 -7.53 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849712000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.601 kcal (2) G-P(sol) polarization free energy of solvation -33.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds