Wall clock time and date at job start Tue Mar 31 2020 05:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.50704 * 119.99949 * 2 1 4 4 C 1.31002 * 120.00086 * 180.02562 * 2 1 3 5 5 C 1.50702 * 119.99650 * 354.52116 * 4 2 1 6 6 C 1.53001 * 109.46785 * 121.70310 * 5 4 2 7 7 O 1.45202 * 109.47202 * 179.97438 * 6 5 4 8 8 C 1.34751 * 117.00005 * 179.97438 * 7 6 5 9 9 O 1.21513 * 120.00314 * 0.02562 * 8 7 6 10 10 C 1.47394 * 119.99801 * 180.02562 * 8 7 6 11 11 C 1.39734 * 120.20533 * 0.02562 * 10 8 7 12 12 C 1.37798 * 119.91458 * 179.97438 * 11 10 8 13 13 C 1.38594 * 120.33516 * 0.02562 * 12 11 10 14 14 C 1.38020 * 120.41128 * 359.97438 * 13 12 11 15 15 C 1.38833 * 120.08085 * 359.97438 * 14 13 12 16 16 O 1.35498 * 120.16950 * 179.97438 * 15 14 13 17 17 C 1.34813 * 117.00092 * 354.01290 * 16 15 14 18 18 H 1.08004 * 119.99888 * 5.07381 * 17 16 15 19 19 C 1.38702 * 120.00502 * 185.06748 * 17 16 15 20 20 N 1.31518 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00128 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47333 * 60.00087 * 21 19 17 23 23 H 1.48499 * 109.47034 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47013 * 300.00097 * 21 19 17 25 25 H 1.09002 * 109.46991 * 264.50309 * 1 2 3 26 26 H 1.08999 * 109.47388 * 24.49793 * 1 2 3 27 27 H 1.08991 * 109.47061 * 144.50208 * 1 2 3 28 28 H 1.08999 * 109.47203 * 240.00038 * 3 2 1 29 29 H 1.09000 * 109.47133 * 0.02562 * 3 2 1 30 30 H 1.08999 * 109.47047 * 120.00440 * 3 2 1 31 31 H 1.08002 * 119.99993 * 174.52499 * 4 2 1 32 32 H 1.09000 * 109.47357 * 1.70034 * 5 4 2 33 33 H 1.08996 * 109.46816 * 241.69729 * 5 4 2 34 34 H 1.09000 * 109.47398 * 59.99750 * 6 5 4 35 35 H 1.09003 * 109.47062 * 299.99998 * 6 5 4 36 36 H 1.08000 * 120.03732 * 0.25481 * 11 10 8 37 37 H 1.08003 * 119.83299 * 179.97438 * 12 11 10 38 38 H 1.07999 * 119.79467 * 179.97438 * 13 12 11 39 39 H 1.08000 * 119.96103 * 180.02562 * 14 13 12 40 40 H 0.97002 * 120.00100 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1620 -1.1345 -0.0005 5 6 1.4136 -2.4367 0.1235 6 6 1.7139 -3.3152 -1.0926 7 8 0.9933 -4.5701 -0.9729 8 6 1.1499 -5.4630 -1.9699 9 8 1.8693 -5.2004 -2.9133 10 6 0.4486 -6.7583 -1.9161 11 6 -0.3801 -7.0645 -0.8335 12 6 -1.0334 -8.2771 -0.7895 13 6 -0.8726 -9.1963 -1.8142 14 6 -0.0573 -8.9080 -2.8899 15 6 0.6081 -7.6911 -2.9523 16 8 1.4093 -7.4064 -4.0073 17 6 1.6170 -8.3932 -4.9020 18 1 1.0892 -9.3305 -4.8044 19 6 2.5084 -8.2050 -5.9478 20 7 3.1514 -7.0639 -6.0664 21 14 2.7955 -9.5722 -7.1879 22 1 1.5155 -9.9049 -7.8631 23 1 3.7868 -9.1236 -8.1985 24 1 3.3131 -10.7750 -6.4875 25 1 -0.3633 -0.0984 1.0230 26 1 -0.3634 0.9351 -0.4261 27 1 -0.3633 -0.8366 -0.5967 28 1 2.8872 1.3629 -0.8900 29 1 1.5522 2.1336 0.0005 30 1 2.8872 1.3628 0.8899 31 1 3.2384 -1.1366 -0.0897 32 1 0.3431 -2.2373 0.1723 33 1 1.7290 -2.9519 1.0307 34 1 2.7844 -3.5146 -1.1414 35 1 1.3986 -2.7999 -1.9999 36 1 -0.5120 -6.3500 -0.0345 37 1 -1.6732 -8.5126 0.0481 38 1 -1.3884 -10.1442 -1.7706 39 1 0.0624 -9.6295 -3.6846 40 1 3.7751 -6.9323 -6.7976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849712000.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:34 Heat of formation + Delta-G solvation = -99.920461 kcal Electronic energy + Delta-G solvation = -22193.280268 eV Core-core repulsion = 18745.384247 eV Total energy + Delta-G solvation = -3447.896021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56207 -40.41031 -38.26114 -38.08233 -37.08695 -34.37984 -33.03415 -32.02693 -30.64206 -28.69116 -27.70697 -27.29814 -25.09309 -23.48495 -22.98519 -21.85533 -19.91841 -19.36090 -18.74619 -18.21869 -17.56672 -17.40021 -16.38895 -16.16710 -16.12922 -15.62807 -15.49600 -15.28360 -15.04128 -14.87362 -14.44541 -14.39280 -14.05235 -13.58034 -13.28679 -13.07127 -12.95519 -12.81586 -12.71003 -12.64506 -12.52628 -12.42201 -12.35731 -12.15857 -11.79063 -11.59843 -11.44234 -11.06850 -10.85245 -9.92891 -9.65942 -9.12440 -8.48860 -6.20452 -0.05059 0.68815 1.11221 1.32709 1.45745 1.50759 1.73145 1.79728 2.14121 2.81616 3.14258 3.37016 3.74577 3.89725 3.99899 4.05916 4.09671 4.11926 4.24889 4.33125 4.44064 4.51614 4.60034 4.64168 4.70956 4.81518 4.90537 4.91015 4.97949 5.03256 5.05645 5.12409 5.13742 5.18151 5.41029 5.47233 5.60382 5.66131 5.74567 5.92387 5.95866 6.12425 6.89390 6.97756 7.71055 8.71166 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016257 B = 0.003694 C = 0.003074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.908392 B = 7578.296090 C = 9107.441915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.121 4.121 3 C -0.119 4.119 4 C -0.187 4.187 5 C -0.077 4.077 6 C 0.069 3.931 7 O -0.353 6.353 8 C 0.496 3.504 9 O -0.533 6.533 10 C -0.239 4.239 11 C -0.012 4.012 12 C -0.203 4.203 13 C -0.027 4.027 14 C -0.256 4.256 15 C 0.156 3.844 16 O -0.188 6.188 17 C -0.429 4.429 18 H 0.112 0.888 19 C -0.021 4.021 20 N -0.904 5.904 21 Si 1.024 2.976 22 H -0.252 1.252 23 H -0.274 1.274 24 H -0.253 1.253 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.157 0.843 37 H 0.167 0.833 38 H 0.162 0.838 39 H 0.131 0.869 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.520 6.679 14.261 17.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.121 4.121 3 C -0.176 4.176 4 C -0.205 4.205 5 C -0.114 4.114 6 C -0.005 4.005 7 O -0.271 6.271 8 C 0.344 3.656 9 O -0.424 6.424 10 C -0.241 4.241 11 C -0.030 4.030 12 C -0.222 4.222 13 C -0.045 4.045 14 C -0.275 4.275 15 C 0.101 3.899 16 O -0.091 6.091 17 C -0.505 4.505 18 H 0.129 0.871 19 C -0.220 4.220 20 N -0.540 5.540 21 Si 0.842 3.158 22 H -0.176 1.176 23 H -0.199 1.199 24 H -0.177 1.177 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.130 0.870 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.175 0.825 37 H 0.184 0.816 38 H 0.179 0.821 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.003 7.132 13.771 17.016 hybrid contribution 0.845 -0.221 -1.186 1.473 sum -6.158 6.911 12.585 15.622 Atomic orbital electron populations 1.21021 0.91564 1.02857 1.02928 1.21978 0.96709 0.95396 0.98023 1.20895 1.00142 0.94066 1.02474 1.22397 0.99799 0.92897 1.05421 1.20652 1.02205 0.92647 0.95871 1.23094 0.95677 0.81295 1.00438 1.86458 1.66987 1.27589 1.46048 1.21465 0.79370 0.85000 0.79757 1.90985 1.38137 1.78273 1.34981 1.18507 1.12052 0.93234 1.00325 1.21402 0.90339 0.97425 0.93807 1.21232 1.05240 0.93989 1.01694 1.21543 0.92513 0.99674 0.90734 1.21299 1.05181 0.97427 1.03641 1.19996 0.89653 0.93555 0.86688 1.84146 1.56758 1.39013 1.29166 1.22072 1.26797 0.95694 1.05914 0.87067 1.26815 0.94415 1.00843 0.99957 1.70304 1.25735 1.26149 1.31771 0.84590 0.79181 0.75929 0.76082 1.17614 1.19861 1.17700 0.90051 0.90750 0.92144 0.91692 0.90652 0.90665 0.87038 0.88910 0.89001 0.92784 0.92980 0.82515 0.81563 0.82094 0.85088 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.97 71.24 0.64 -1.42 16 2 C -0.12 -2.26 6.05 -16.49 -0.10 -2.36 16 3 C -0.12 -1.75 10.04 71.24 0.72 -1.03 16 4 C -0.19 -4.04 9.15 25.64 0.23 -3.80 16 5 C -0.08 -1.82 5.76 29.85 0.17 -1.65 16 6 C 0.07 2.32 5.46 71.98 0.39 2.71 16 7 O -0.35 -13.60 9.47 -56.62 -0.54 -14.13 16 8 C 0.50 24.26 7.89 70.23 0.55 24.81 16 9 O -0.53 -31.94 14.96 26.79 0.40 -31.54 16 10 C -0.24 -10.92 5.89 -19.99 -0.12 -11.03 16 11 C -0.01 -0.39 9.61 22.53 0.22 -0.17 16 12 C -0.20 -5.60 10.02 22.25 0.22 -5.38 16 13 C -0.03 -0.81 10.03 22.30 0.22 -0.59 16 14 C -0.26 -10.74 9.16 22.36 0.20 -10.53 16 15 C 0.16 8.08 6.66 22.92 0.15 8.23 16 16 O -0.19 -11.93 7.84 1.10 0.01 -11.92 16 17 C -0.43 -25.57 9.49 67.93 0.64 -24.92 16 18 H 0.11 5.85 5.21 -2.91 -0.02 5.84 16 19 C -0.02 -1.21 5.49 84.85 0.47 -0.74 16 20 N -0.90 -58.45 13.67 21.62 0.30 -58.15 16 21 Si 1.02 43.33 29.55 68.60 2.03 45.36 16 22 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 25 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.07 1.02 7.94 -2.39 -0.02 1.00 16 27 H 0.06 1.12 6.53 -2.39 -0.02 1.10 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.89 7.87 -2.39 -0.02 0.87 16 30 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.11 2.37 8.05 -2.91 -0.02 2.35 16 32 H 0.09 1.99 5.54 -2.39 -0.01 1.97 16 33 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.16 4.19 7.61 -2.91 -0.02 4.17 16 37 H 0.17 3.01 8.06 -2.91 -0.02 2.98 16 38 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 39 H 0.13 5.44 5.64 -2.91 -0.02 5.43 16 40 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 Total: -1.00 -81.81 344.14 7.86 -73.95 By element: Atomic # 1 Polarization: 23.26 SS G_CDS: 1.04 Total: 24.30 kcal Atomic # 6 Polarization: -32.50 SS G_CDS: 4.62 Total: -27.87 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.30 Total: -58.15 kcal Atomic # 8 Polarization: -57.47 SS G_CDS: -0.13 Total: -57.59 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -81.81 7.86 -73.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849712000.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.970 kcal (2) G-P(sol) polarization free energy of solvation -81.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds