Wall clock time and date at job start Tue Mar 31 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.47175 * 2 1 4 4 C 1.50698 * 109.47009 * 120.00129 * 2 1 3 5 5 O 1.20818 * 120.00336 * 25.18193 * 4 2 1 6 6 O 1.34237 * 119.99644 * 205.17641 * 4 2 1 7 7 C 1.45195 * 116.99638 * 183.94794 * 6 4 2 8 8 C 1.53002 * 109.47073 * 184.00537 * 7 6 4 9 9 C 1.50702 * 115.54763 * 300.09937 * 8 7 6 10 10 H 1.08007 * 119.99369 * 115.42659 * 9 8 7 11 11 C 1.37872 * 120.00230 * 295.15094 * 9 8 7 12 12 N 1.31511 * 119.99933 * 173.79702 * 11 9 8 13 13 Si 1.86795 * 120.00100 * 353.79374 * 11 9 8 14 14 H 1.48500 * 109.47378 * 93.42732 * 13 11 9 15 15 H 1.48504 * 109.47265 * 213.42788 * 13 11 9 16 16 H 1.48504 * 109.47303 * 333.42756 * 13 11 9 17 17 C 1.53000 * 117.50020 * 85.77150 * 8 7 6 18 18 C 1.52998 * 117.49858 * 154.43314 * 8 7 6 19 19 C 1.50704 * 109.46984 * 239.99978 * 2 1 3 20 20 C 1.38228 * 120.00201 * 293.74521 * 19 2 1 21 21 C 1.38239 * 120.00005 * 179.76755 * 20 19 2 22 22 C 1.38236 * 119.99989 * 0.50518 * 21 20 19 23 23 C 1.38237 * 119.99732 * 359.74577 * 22 21 20 24 24 C 1.38231 * 119.99942 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.46789 * 300.00248 * 1 2 3 26 26 H 1.08999 * 109.46714 * 59.99853 * 1 2 3 27 27 H 1.08997 * 109.46967 * 179.97438 * 1 2 3 28 28 H 0.96697 * 113.99747 * 183.72826 * 3 2 1 29 29 H 1.09000 * 109.47445 * 64.00257 * 7 6 4 30 30 H 1.09007 * 109.47188 * 304.00308 * 7 6 4 31 31 H 0.97003 * 119.99941 * 180.02562 * 12 11 9 32 32 H 1.08997 * 117.49682 * 215.00546 * 17 8 7 33 33 H 1.08998 * 117.49490 * 0.02562 * 17 8 7 34 34 H 1.09003 * 117.50518 * 359.97438 * 18 8 7 35 35 H 1.09007 * 117.50029 * 144.97647 * 18 8 7 36 36 H 1.08002 * 120.00042 * 359.97438 * 20 19 2 37 37 H 1.08001 * 119.99914 * 180.23329 * 21 20 19 38 38 H 1.07996 * 119.99874 * 179.72710 * 22 21 20 39 39 H 1.08001 * 119.99816 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.99879 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3410 -1.5386 1.7744 6 8 3.2480 -0.4232 1.7220 7 6 3.7026 -1.2076 2.8561 8 6 5.0540 -0.6744 3.3361 9 6 6.1656 -0.7114 2.3192 10 1 6.6025 0.2099 1.9631 11 6 6.6287 -1.9214 1.8477 12 7 7.5114 -1.9532 0.8734 13 14 6.0025 -3.5157 2.5930 14 1 4.8492 -4.0131 1.8007 15 1 7.0877 -4.5293 2.5773 16 1 5.5727 -3.2723 3.9935 17 6 5.0420 0.4908 4.3276 18 6 5.4278 -0.9131 4.8004 19 6 2.0324 -0.7104 -1.2305 20 6 1.8083 -2.0655 -1.3861 21 6 2.2649 -2.7162 -2.5171 22 6 2.9547 -2.0138 -3.4876 23 6 3.1833 -0.6597 -3.3295 24 6 2.7225 -0.0081 -2.2007 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9686 1.4242 -0.0574 29 1 3.8088 -2.2505 2.5574 30 1 2.9749 -1.1334 3.6643 31 1 7.8370 -2.8045 0.5414 32 1 5.8380 1.2306 4.2443 33 1 4.0713 0.8772 4.6382 34 1 4.7109 -1.4496 5.4220 35 1 6.4778 -1.0971 5.0282 36 1 1.2736 -2.6153 -0.6257 37 1 2.0865 -3.7742 -2.6405 38 1 3.3152 -2.5231 -4.3690 39 1 3.7225 -0.1110 -4.0874 40 1 2.9015 1.0497 -2.0770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849810627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:11 Heat of formation + Delta-G solvation = -80.797912 kcal Electronic energy + Delta-G solvation = -23851.420714 eV Core-core repulsion = 20404.353909 eV Total energy + Delta-G solvation = -3447.066805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.67803 -39.04864 -37.28791 -36.66274 -35.54849 -32.27883 -32.17011 -30.76472 -29.37851 -27.62800 -25.53178 -24.37019 -22.58742 -22.10525 -21.60902 -19.95337 -19.21150 -18.18270 -17.50883 -17.03144 -16.07033 -15.81722 -15.55899 -14.98479 -14.70792 -14.34609 -14.06552 -13.73326 -13.41390 -13.07174 -12.84952 -12.71746 -12.52796 -12.43886 -12.24558 -12.18787 -11.81648 -11.40946 -11.11221 -11.02087 -10.96096 -10.81339 -10.65721 -10.33900 -10.03101 -9.84945 -9.53419 -9.12159 -8.84602 -8.73958 -8.70147 -8.51413 -6.15844 -4.15745 1.30406 1.47334 2.45679 3.01492 3.21871 3.32699 3.36870 3.82679 4.16226 4.35764 4.48104 4.71817 4.87559 4.98802 5.05139 5.15190 5.18772 5.26087 5.51185 5.58275 5.60456 5.67788 5.76197 5.81525 5.92666 5.96561 6.04059 6.07913 6.09974 6.28869 6.42965 6.48788 6.54115 6.56595 6.61015 6.79306 7.00881 7.03947 7.08197 7.50609 7.65820 8.13421 8.45231 8.87531 9.46979 10.95848 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.006738 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.898447 B = 4154.503485 C = 5005.151041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.196 3.804 3 O -0.540 6.540 4 C 0.438 3.562 5 O -0.516 6.516 6 O -0.320 6.320 7 C 0.106 3.894 8 C -0.008 4.008 9 C -0.477 4.477 10 H 0.080 0.920 11 C 0.082 3.918 12 N -0.891 5.891 13 Si 0.857 3.143 14 H -0.280 1.280 15 H -0.288 1.288 16 H -0.249 1.249 17 C -0.176 4.176 18 C -0.182 4.182 19 C -0.118 4.118 20 C -0.105 4.105 21 C -0.119 4.119 22 C -0.113 4.113 23 C -0.116 4.116 24 C -0.094 4.094 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.083 0.917 28 H 0.395 0.605 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.447 2.096 -5.641 12.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.153 3.847 3 O -0.348 6.348 4 C 0.280 3.720 5 O -0.405 6.405 6 O -0.234 6.234 7 C 0.033 3.967 8 C -0.009 4.009 9 C -0.514 4.514 10 H 0.098 0.902 11 C -0.121 4.121 12 N -0.528 5.528 13 Si 0.684 3.316 14 H -0.206 1.206 15 H -0.214 1.214 16 H -0.173 1.173 17 C -0.213 4.213 18 C -0.220 4.220 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.137 4.137 22 C -0.131 4.131 23 C -0.134 4.134 24 C -0.112 4.112 25 H 0.090 0.910 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.246 0.754 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.144 0.856 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.106 1.869 -5.510 13.432 hybrid contribution 0.431 -1.398 0.427 1.524 sum -11.676 0.471 -5.083 12.743 Atomic orbital electron populations 1.21687 0.88886 1.03868 1.03691 1.19779 0.95959 0.81928 0.87033 1.86496 1.29229 1.22981 1.96079 1.24438 0.80723 0.81239 0.85580 1.90597 1.57705 1.33092 1.59156 1.86559 1.31547 1.58450 1.46859 1.22946 0.95415 0.93748 0.84582 1.19327 0.92647 0.99327 0.89646 1.20188 1.15278 0.94487 1.21415 0.90168 1.24885 0.94509 0.98691 0.94050 1.69882 1.31031 1.26246 1.25636 0.87174 0.78653 0.84051 0.81678 1.20632 1.21392 1.17304 1.22811 1.01014 0.91658 1.05780 1.23085 1.01282 0.99029 0.98610 1.20054 1.01068 0.94683 0.96090 1.21051 0.99603 0.93665 0.97996 1.21097 0.98620 0.99870 0.94076 1.21209 0.98187 0.94580 0.99091 1.21124 0.99669 0.94779 0.97864 1.20944 0.96376 1.00500 0.93348 0.90963 0.90357 0.89833 0.75360 0.92319 0.93058 0.92546 0.89252 0.90809 0.91113 0.88838 0.85748 0.85897 0.85953 0.85632 0.84962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.63 8.25 37.16 0.31 -1.33 16 2 C 0.20 3.08 1.19 -92.92 -0.11 2.97 16 3 O -0.54 -8.01 11.85 -49.18 -0.58 -8.60 16 4 C 0.44 8.54 6.24 36.00 0.22 8.77 16 5 O -0.52 -10.66 15.46 -18.74 -0.29 -10.95 16 6 O -0.32 -6.99 9.58 -44.46 -0.43 -7.41 16 7 C 0.11 2.41 5.01 37.16 0.19 2.59 16 8 C -0.01 -0.20 1.09 -155.66 -0.17 -0.37 16 9 C -0.48 -13.07 9.24 -34.44 -0.32 -13.39 16 10 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 11 C 0.08 2.31 5.46 -17.82 -0.10 2.21 16 12 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 13 Si 0.86 21.31 24.96 -169.99 -4.24 17.07 16 14 H -0.28 -7.05 7.03 56.52 0.40 -6.65 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.25 -5.78 5.74 56.52 0.32 -5.46 16 17 C -0.18 -3.53 9.95 -26.69 -0.27 -3.79 16 18 C -0.18 -3.78 8.08 -26.69 -0.22 -4.00 16 19 C -0.12 -1.84 4.76 -104.62 -0.50 -2.33 16 20 C -0.11 -1.63 8.82 -39.58 -0.35 -1.98 16 21 C -0.12 -1.64 10.05 -39.58 -0.40 -2.04 16 22 C -0.11 -1.45 10.05 -39.58 -0.40 -1.85 16 23 C -0.12 -1.52 10.05 -39.58 -0.40 -1.91 16 24 C -0.09 -1.32 9.17 -39.58 -0.36 -1.68 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.06 7.51 -51.93 -0.39 0.67 16 28 H 0.40 5.44 7.84 45.56 0.36 5.80 16 29 H 0.06 1.41 5.02 -51.93 -0.26 1.15 16 30 H 0.05 1.07 7.98 -51.93 -0.41 0.65 16 31 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.09 1.77 8.14 -51.93 -0.42 1.34 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.09 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.12 1.93 7.50 -52.49 -0.39 1.53 16 37 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 39 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 40 H 0.13 1.61 6.69 -52.49 -0.35 1.26 16 LS Contribution 335.04 15.07 5.05 5.05 Total: -1.00 -31.61 335.04 -7.48 -39.08 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -4.90 Total: 9.73 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -2.86 Total: -18.13 kcal Atomic # 7 Polarization: -26.61 SS G_CDS: 0.77 Total: -25.84 kcal Atomic # 8 Polarization: -25.66 SS G_CDS: -1.30 Total: -26.96 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.24 Total: 17.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.61 -7.48 -39.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849810627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.713 kcal (2) G-P(sol) polarization free energy of solvation -31.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds