Wall clock time and date at job start Tue Mar 31 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42902 * 109.47175 * 2 1 4 4 C 1.50698 * 109.47009 * 120.00129 * 2 1 3 5 5 O 1.20818 * 120.00336 * 25.18193 * 4 2 1 6 6 O 1.34237 * 119.99644 * 205.17641 * 4 2 1 7 7 C 1.45195 * 116.99638 * 183.94794 * 6 4 2 8 8 C 1.53002 * 109.47073 * 184.00537 * 7 6 4 9 9 C 1.50702 * 115.54763 * 300.09937 * 8 7 6 10 10 H 1.08007 * 119.99369 * 115.42659 * 9 8 7 11 11 C 1.37872 * 120.00230 * 295.15094 * 9 8 7 12 12 N 1.31511 * 119.99933 * 173.79702 * 11 9 8 13 13 Si 1.86795 * 120.00100 * 353.79374 * 11 9 8 14 14 H 1.48500 * 109.47378 * 93.42732 * 13 11 9 15 15 H 1.48504 * 109.47265 * 213.42788 * 13 11 9 16 16 H 1.48504 * 109.47303 * 333.42756 * 13 11 9 17 17 C 1.53000 * 117.50020 * 85.77150 * 8 7 6 18 18 C 1.52998 * 117.49858 * 154.43314 * 8 7 6 19 19 C 1.50704 * 109.46984 * 239.99978 * 2 1 3 20 20 C 1.38228 * 120.00201 * 293.74521 * 19 2 1 21 21 C 1.38239 * 120.00005 * 179.76755 * 20 19 2 22 22 C 1.38236 * 119.99989 * 0.50518 * 21 20 19 23 23 C 1.38237 * 119.99732 * 359.74577 * 22 21 20 24 24 C 1.38231 * 119.99942 * 0.02562 * 23 22 21 25 25 H 1.08998 * 109.46789 * 300.00248 * 1 2 3 26 26 H 1.08999 * 109.46714 * 59.99853 * 1 2 3 27 27 H 1.08997 * 109.46967 * 179.97438 * 1 2 3 28 28 H 0.96697 * 113.99747 * 183.72826 * 3 2 1 29 29 H 1.09000 * 109.47445 * 64.00257 * 7 6 4 30 30 H 1.09007 * 109.47188 * 304.00308 * 7 6 4 31 31 H 0.97003 * 119.99941 * 180.02562 * 12 11 9 32 32 H 1.08997 * 117.49682 * 215.00546 * 17 8 7 33 33 H 1.08998 * 117.49490 * 0.02562 * 17 8 7 34 34 H 1.09003 * 117.50518 * 359.97438 * 18 8 7 35 35 H 1.09007 * 117.50029 * 144.97647 * 18 8 7 36 36 H 1.08002 * 120.00042 * 359.97438 * 20 19 2 37 37 H 1.08001 * 119.99914 * 180.23329 * 21 20 19 38 38 H 1.07996 * 119.99874 * 179.72710 * 22 21 20 39 39 H 1.08001 * 119.99816 * 179.97438 * 23 22 21 40 40 H 1.08002 * 119.99879 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.3410 -1.5386 1.7744 6 8 3.2480 -0.4232 1.7220 7 6 3.7026 -1.2076 2.8561 8 6 5.0540 -0.6744 3.3361 9 6 6.1656 -0.7114 2.3192 10 1 6.6025 0.2099 1.9631 11 6 6.6287 -1.9214 1.8477 12 7 7.5114 -1.9532 0.8734 13 14 6.0025 -3.5157 2.5930 14 1 4.8492 -4.0131 1.8007 15 1 7.0877 -4.5293 2.5773 16 1 5.5727 -3.2723 3.9935 17 6 5.0420 0.4908 4.3276 18 6 5.4278 -0.9131 4.8004 19 6 2.0324 -0.7104 -1.2305 20 6 1.8083 -2.0655 -1.3861 21 6 2.2649 -2.7162 -2.5171 22 6 2.9547 -2.0138 -3.4876 23 6 3.1833 -0.6597 -3.3295 24 6 2.7225 -0.0081 -2.2007 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 2.9686 1.4242 -0.0574 29 1 3.8088 -2.2505 2.5574 30 1 2.9749 -1.1334 3.6643 31 1 7.8370 -2.8045 0.5414 32 1 5.8380 1.2306 4.2443 33 1 4.0713 0.8772 4.6382 34 1 4.7109 -1.4496 5.4220 35 1 6.4778 -1.0971 5.0282 36 1 1.2736 -2.6153 -0.6257 37 1 2.0865 -3.7742 -2.6405 38 1 3.3152 -2.5231 -4.3690 39 1 3.7225 -0.1110 -4.0874 40 1 2.9015 1.0497 -2.0770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849810627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:11 Heat of formation + Delta-G solvation = -99.889974 kcal Electronic energy + Delta-G solvation = -23852.248608 eV Core-core repulsion = 20404.353909 eV Total energy + Delta-G solvation = -3447.894698 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.08823 -40.32062 -38.89039 -37.92610 -37.19626 -34.30237 -33.42306 -31.82410 -30.46260 -29.32649 -27.50651 -25.71626 -23.72369 -23.37881 -23.15202 -21.29211 -21.06547 -19.49059 -18.87764 -18.77462 -17.69221 -17.50540 -16.77072 -16.54338 -16.09494 -15.74235 -15.35985 -15.04929 -14.93755 -14.63668 -14.40175 -14.24748 -13.97869 -13.72259 -13.58414 -13.23555 -13.08687 -12.98978 -12.90632 -12.60575 -12.32933 -12.17540 -12.07456 -11.98347 -11.77154 -11.53572 -11.16974 -11.01460 -10.65844 -10.41601 -9.92303 -9.82263 -8.32836 -6.35343 0.19837 0.39429 0.96493 1.23735 1.30233 1.39665 1.56156 2.29254 2.73363 2.93797 2.98436 3.20509 3.32319 3.54810 3.79149 3.90353 4.02226 4.05714 4.07206 4.20486 4.22882 4.36842 4.49835 4.55481 4.58481 4.64463 4.75181 4.84832 4.90878 4.92761 5.01712 5.04186 5.15407 5.42005 5.42754 5.45634 5.47105 5.51855 5.63730 5.98617 6.27330 6.31713 6.58727 6.69331 7.30043 8.82295 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014711 B = 0.006738 C = 0.005593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.898447 B = 4154.503485 C = 5005.151041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.201 3.799 3 O -0.537 6.537 4 C 0.432 3.568 5 O -0.531 6.531 6 O -0.337 6.337 7 C 0.109 3.891 8 C -0.043 4.043 9 C -0.471 4.471 10 H 0.040 0.960 11 C 0.031 3.969 12 N -0.938 5.938 13 Si 0.909 3.091 14 H -0.288 1.288 15 H -0.287 1.287 16 H -0.220 1.220 17 C -0.156 4.156 18 C -0.170 4.170 19 C -0.136 4.136 20 C -0.127 4.127 21 C -0.129 4.129 22 C -0.116 4.116 23 C -0.122 4.122 24 C -0.105 4.105 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.398 0.602 29 H 0.039 0.961 30 H 0.072 0.928 31 H 0.265 0.735 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.142 0.858 38 H 0.151 0.849 39 H 0.152 0.848 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.682 2.075 -5.191 13.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.158 3.842 3 O -0.345 6.345 4 C 0.276 3.724 5 O -0.421 6.421 6 O -0.252 6.252 7 C 0.035 3.965 8 C -0.044 4.044 9 C -0.509 4.509 10 H 0.058 0.942 11 C -0.167 4.167 12 N -0.577 5.577 13 Si 0.734 3.266 14 H -0.215 1.215 15 H -0.214 1.214 16 H -0.142 1.142 17 C -0.193 4.193 18 C -0.207 4.207 19 C -0.136 4.136 20 C -0.145 4.145 21 C -0.146 4.146 22 C -0.134 4.134 23 C -0.139 4.139 24 C -0.123 4.123 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.102 0.898 28 H 0.250 0.750 29 H 0.058 0.942 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.106 0.894 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.108 0.892 36 H 0.133 0.867 37 H 0.160 0.840 38 H 0.169 0.831 39 H 0.170 0.830 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -13.355 1.866 -5.037 14.395 hybrid contribution 0.830 -1.301 0.221 1.559 sum -12.524 0.565 -4.816 13.430 Atomic orbital electron populations 1.21737 0.86979 1.04311 1.04800 1.19907 0.97183 0.81723 0.85380 1.86493 1.29583 1.22545 1.95898 1.25322 0.79747 0.81178 0.86190 1.90570 1.57856 1.33861 1.59819 1.86576 1.32928 1.58677 1.47000 1.22803 0.95462 0.92725 0.85461 1.19247 0.91808 1.03275 0.90042 1.20305 1.15867 0.92804 1.21934 0.94167 1.25577 0.94818 1.01852 0.94482 1.70011 1.33125 1.26939 1.27617 0.86344 0.77648 0.80202 0.82396 1.21524 1.21376 1.14205 1.22878 1.02316 0.91157 1.02949 1.23142 1.01877 0.99559 0.96148 1.20134 1.02171 0.94924 0.96391 1.21154 1.00660 0.93980 0.98744 1.21416 0.98442 1.01011 0.93776 1.21615 0.97295 0.94750 0.99690 1.21534 0.99183 0.95204 0.98022 1.21225 0.96158 1.01379 0.93544 0.90772 0.88256 0.89758 0.75035 0.94245 0.91003 0.92629 0.89437 0.88128 0.88342 0.89234 0.86662 0.84041 0.83125 0.83026 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.05 8.25 71.98 0.59 -2.46 16 2 C 0.20 6.20 1.19 -12.28 -0.01 6.19 16 3 O -0.54 -15.50 11.85 -135.65 -1.61 -17.11 16 4 C 0.43 16.70 6.24 71.24 0.44 17.15 16 5 O -0.53 -21.71 15.46 21.99 0.34 -21.37 16 6 O -0.34 -14.64 9.58 -46.53 -0.45 -15.08 16 7 C 0.11 4.79 5.01 71.98 0.36 5.15 16 8 C -0.04 -1.94 1.09 -52.93 -0.06 -2.00 16 9 C -0.47 -26.26 9.24 25.60 0.24 -26.02 16 10 H 0.04 2.49 8.06 -2.91 -0.02 2.46 16 11 C 0.03 1.79 5.46 84.65 0.46 2.25 16 12 N -0.94 -57.55 13.96 21.44 0.30 -57.25 16 13 Si 0.91 43.95 24.96 68.60 1.71 45.66 16 14 H -0.29 -14.24 7.03 99.48 0.70 -13.54 16 15 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 16 H -0.22 -9.45 5.74 99.48 0.57 -8.88 16 17 C -0.16 -5.88 9.95 30.62 0.30 -5.58 16 18 C -0.17 -6.53 8.08 30.62 0.25 -6.28 16 19 C -0.14 -4.15 4.76 -19.87 -0.09 -4.25 16 20 C -0.13 -3.93 8.82 22.27 0.20 -3.73 16 21 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 22 C -0.12 -2.78 10.05 22.27 0.22 -2.56 16 23 C -0.12 -2.97 10.05 22.27 0.22 -2.75 16 24 C -0.11 -2.87 9.17 22.27 0.20 -2.66 16 25 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 26 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.08 2.09 7.51 -2.39 -0.02 2.07 16 28 H 0.40 10.88 7.84 -74.06 -0.58 10.30 16 29 H 0.04 1.86 5.02 -2.39 -0.01 1.85 16 30 H 0.07 2.82 7.98 -2.38 -0.02 2.80 16 31 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 32 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 34 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 35 H 0.09 3.51 8.14 -2.38 -0.02 3.50 16 36 H 0.12 3.65 7.50 -2.91 -0.02 3.63 16 37 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 38 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 39 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 40 H 0.15 3.41 6.69 -2.91 -0.02 3.39 16 Total: -1.00 -68.81 335.04 4.18 -64.64 By element: Atomic # 1 Polarization: 30.95 SS G_CDS: 0.33 Total: 31.28 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 3.55 Total: -30.77 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.30 Total: -57.25 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -1.71 Total: -53.56 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.71 Total: 45.66 kcal Total: -68.81 4.18 -64.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849810627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.254 kcal (2) G-P(sol) polarization free energy of solvation -68.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds