Wall clock time and date at job start Tue Mar 31 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.65749 * 2 1 4 4 C 1.54707 * 110.73836 * 236.80654 * 2 1 3 5 5 C 1.51682 * 101.87814 * 216.23955 * 4 2 1 6 6 C 1.37280 * 132.06574 * 195.74766 * 5 4 2 7 7 C 1.39872 * 119.85042 * 179.57805 * 6 5 4 8 8 C 1.47469 * 120.27192 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99820 * 0.02562 * 8 7 6 10 10 O 1.34748 * 120.00185 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00040 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47150 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47030 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46619 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00785 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00098 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00267 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46894 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47162 * 119.99955 * 18 16 14 21 21 H 1.48494 * 109.47293 * 240.00281 * 18 16 14 22 22 C 1.39810 * 119.45796 * 0.02562 * 7 6 5 23 23 C 1.37452 * 120.19852 * 0.17542 * 22 7 6 24 24 C 1.39201 * 106.98223 * 15.72197 * 5 4 2 25 25 O 1.35973 * 111.19344 * 0.61814 * 24 5 4 26 26 H 1.08993 * 109.47090 * 183.19797 * 1 2 3 27 27 H 1.08997 * 109.46906 * 303.19336 * 1 2 3 28 28 H 1.08999 * 109.47403 * 63.19248 * 1 2 3 29 29 H 1.08997 * 110.94712 * 334.38920 * 4 2 1 30 30 H 1.08997 * 110.94879 * 98.09710 * 4 2 1 31 31 H 1.07990 * 120.07565 * 359.62513 * 6 5 4 32 32 H 1.09003 * 109.47033 * 299.99417 * 11 10 8 33 33 H 1.09005 * 109.47106 * 59.99665 * 11 10 8 34 34 H 1.08997 * 109.47274 * 300.00288 * 12 11 10 35 35 H 1.09008 * 109.46978 * 59.99564 * 12 11 10 36 36 H 1.09003 * 109.47181 * 299.99956 * 13 12 11 37 37 H 1.08993 * 109.47431 * 60.00540 * 13 12 11 38 38 H 0.96998 * 120.00556 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.90639 * 180.19782 * 22 7 6 40 40 H 1.07990 * 119.78193 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0778 -0.7921 -1.2107 5 6 3.3080 -1.4542 -0.6199 6 6 4.3945 -2.0604 -1.2002 7 6 5.4086 -2.5898 -0.3953 8 6 6.5795 -3.2434 -1.0088 9 8 6.6664 -3.3234 -2.2181 10 8 7.5531 -3.7520 -0.2282 11 6 8.6756 -4.3816 -0.9005 12 6 9.6716 -4.8945 0.1414 13 6 10.8541 -5.5585 -0.5670 14 6 11.8348 -6.0642 0.4594 15 1 11.6350 -5.9256 1.5117 16 6 12.9878 -6.7031 0.0551 17 7 13.2320 -6.8706 -1.2263 18 14 14.2039 -7.3294 1.3271 19 1 13.7007 -7.0168 2.6889 20 1 14.3596 -8.7990 1.1816 21 1 15.5184 -6.6697 1.1222 22 6 5.3025 -2.4951 0.9955 23 6 4.2082 -1.8896 1.5658 24 6 3.1932 -1.3636 0.7644 25 8 2.0391 -0.7399 1.1222 26 1 -0.3633 -1.0260 0.0573 27 1 -0.3633 0.5626 0.8600 28 1 -0.3634 0.4635 -0.9172 29 1 1.3573 -1.5378 -1.5468 30 1 2.3499 -0.1205 -2.0250 31 1 4.4664 -2.1277 -2.2756 32 1 8.3168 -5.2165 -1.5025 33 1 9.1676 -3.6536 -1.5455 34 1 10.0303 -4.0595 0.7431 35 1 9.1798 -5.6225 0.7868 36 1 10.4950 -6.3937 -1.1684 37 1 11.3460 -4.8310 -1.2124 38 1 14.0429 -7.3203 -1.5109 39 1 6.0828 -2.8985 1.6237 40 1 4.1334 -1.8198 2.6409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850063637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:23 Heat of formation + Delta-G solvation = -112.229795 kcal Electronic energy + Delta-G solvation = -21527.284667 eV Core-core repulsion = 18078.854874 eV Total energy + Delta-G solvation = -3448.429793 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61308 -40.13243 -37.71753 -36.30032 -33.98458 -33.64938 -31.89367 -31.46615 -30.64383 -27.48009 -26.79216 -24.46424 -22.93718 -22.25063 -22.16902 -20.71564 -20.29265 -18.03047 -17.73693 -16.92773 -16.77660 -16.24193 -16.08359 -15.70028 -14.57066 -14.48714 -14.39104 -14.13465 -13.88929 -13.58134 -13.33999 -13.26600 -12.86203 -12.66122 -12.52354 -12.18586 -12.09359 -11.86907 -11.72726 -11.23141 -11.06885 -10.97810 -10.65579 -10.62767 -10.39304 -10.37569 -9.71276 -9.51070 -9.29853 -9.14359 -8.55580 -8.38587 -6.03104 -4.06009 0.50448 0.98687 2.46627 2.72976 2.88340 3.30529 3.37958 3.42300 3.49898 3.96255 4.04297 4.39245 4.43759 4.48571 4.64695 4.70867 4.82477 4.95816 5.06081 5.12286 5.18956 5.32939 5.34274 5.41082 5.55592 5.59807 5.63558 5.66989 5.81221 5.95411 6.02475 6.06373 6.17037 6.50322 6.55230 6.74369 6.84527 6.99252 7.61296 7.72141 7.93502 7.95760 8.36521 9.00542 9.58269 11.08364 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.048815 B = 0.002251 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.452073 B =12436.513757 C =12954.298206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.075 3.925 3 H 0.090 0.910 4 C -0.104 4.104 5 C -0.193 4.193 6 C -0.005 4.005 7 C -0.152 4.152 8 C 0.508 3.492 9 O -0.513 6.513 10 O -0.354 6.354 11 C 0.069 3.931 12 C -0.109 4.109 13 C 0.023 3.977 14 C -0.520 4.520 15 H 0.058 0.942 16 C 0.056 3.944 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.023 4.023 23 C -0.152 4.152 24 C 0.140 3.860 25 O -0.298 6.298 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.140 0.860 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.020 0.980 37 H 0.020 0.980 38 H 0.261 0.739 39 H 0.152 0.848 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.959 14.717 2.369 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.019 3.981 3 H 0.108 0.892 4 C -0.141 4.141 5 C -0.194 4.194 6 C -0.023 4.023 7 C -0.153 4.153 8 C 0.353 3.647 9 O -0.403 6.403 10 O -0.270 6.270 11 C -0.004 4.004 12 C -0.146 4.146 13 C -0.014 4.014 14 C -0.559 4.559 15 H 0.076 0.924 16 C -0.146 4.146 17 N -0.534 5.534 18 Si 0.723 3.277 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.041 4.041 23 C -0.171 4.171 24 C 0.094 3.906 25 O -0.212 6.212 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.158 0.842 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.070 0.930 39 H 0.169 0.831 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -25.894 14.610 2.103 29.805 hybrid contribution 0.843 -0.413 0.266 0.976 sum -25.050 14.197 2.370 28.891 Atomic orbital electron populations 1.21897 0.91827 1.03699 1.03318 1.23459 0.95975 0.95509 0.83114 0.89178 1.21876 0.94352 0.99406 0.98436 1.20610 0.98146 1.06761 0.93861 1.20318 0.89716 0.91689 1.00603 1.19009 0.95418 1.06957 0.93906 1.20885 0.82543 0.75992 0.85264 1.90827 1.78421 1.55639 1.15401 1.86532 1.31108 1.67971 1.41391 1.23532 0.83636 0.96469 0.96717 1.21769 0.95390 1.00213 0.97275 1.19061 0.90794 0.95553 0.95991 1.21213 1.04482 1.37072 0.93097 0.92353 1.25040 0.98134 0.96066 0.95313 1.69974 1.26313 1.42906 1.14157 0.86487 0.81032 0.78509 0.81690 1.19666 1.20986 1.20994 1.21291 0.96251 0.92786 0.93742 1.20259 0.92292 1.04232 1.00307 1.19909 0.86138 0.91785 0.92803 1.86816 1.34414 1.61791 1.38160 0.91257 0.91185 0.90083 0.88793 0.88712 0.84217 0.91411 0.91418 0.92096 0.92096 0.96202 0.96200 0.92953 0.83075 0.84424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.58 37.16 0.36 -0.29 16 2 C 0.08 0.48 4.26 -25.83 -0.11 0.37 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.10 -0.69 6.65 -26.50 -0.18 -0.87 16 5 C -0.19 -1.92 6.25 -104.13 -0.65 -2.57 16 6 C -0.01 -0.06 9.58 -39.32 -0.38 -0.43 16 7 C -0.15 -1.98 5.88 -104.94 -0.62 -2.59 16 8 C 0.51 8.24 7.89 34.49 0.27 8.52 16 9 O -0.51 -9.53 16.15 -19.27 -0.31 -9.84 16 10 O -0.35 -6.02 9.48 -40.62 -0.38 -6.40 16 11 C 0.07 1.30 5.48 37.16 0.20 1.50 16 12 C -0.11 -2.26 5.53 -26.73 -0.15 -2.41 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 14 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.02 -0.25 9.59 -39.28 -0.38 -0.63 16 23 C -0.15 -1.52 10.05 -39.35 -0.40 -1.92 16 24 C 0.14 1.45 7.05 -38.71 -0.27 1.18 16 25 O -0.30 -2.87 10.79 -19.66 -0.21 -3.08 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.09 0.55 7.93 -51.93 -0.41 0.14 16 30 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.14 1.54 7.66 -52.49 -0.40 1.14 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.15 1.54 7.61 -52.49 -0.40 1.14 16 40 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -32.48 344.75 -8.67 -41.15 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.83 Total: -4.26 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: -2.84 Total: -13.18 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.74 Total: -26.16 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: -0.91 Total: -19.33 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.48 -8.67 -41.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850063637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.080 kcal (2) G-P(sol) polarization free energy of solvation -32.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds