Wall clock time and date at job start Tue Mar 31 2020 06:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.65749 * 2 1 4 4 C 1.54707 * 110.73836 * 236.80654 * 2 1 3 5 5 C 1.51682 * 101.87814 * 216.23955 * 4 2 1 6 6 C 1.37280 * 132.06574 * 195.74766 * 5 4 2 7 7 C 1.39872 * 119.85042 * 179.57805 * 6 5 4 8 8 C 1.47469 * 120.27192 * 179.97438 * 7 6 5 9 9 O 1.21506 * 119.99820 * 0.02562 * 8 7 6 10 10 O 1.34748 * 120.00185 * 180.02562 * 8 7 6 11 11 C 1.45202 * 117.00040 * 179.97438 * 10 8 7 12 12 C 1.52998 * 109.47150 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47030 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.46619 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00785 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99710 * 180.02562 * 14 13 12 17 17 N 1.31515 * 120.00098 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00267 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.46894 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47162 * 119.99955 * 18 16 14 21 21 H 1.48494 * 109.47293 * 240.00281 * 18 16 14 22 22 C 1.39810 * 119.45796 * 0.02562 * 7 6 5 23 23 C 1.37452 * 120.19852 * 0.17542 * 22 7 6 24 24 C 1.39201 * 106.98223 * 15.72197 * 5 4 2 25 25 O 1.35973 * 111.19344 * 0.61814 * 24 5 4 26 26 H 1.08993 * 109.47090 * 183.19797 * 1 2 3 27 27 H 1.08997 * 109.46906 * 303.19336 * 1 2 3 28 28 H 1.08999 * 109.47403 * 63.19248 * 1 2 3 29 29 H 1.08997 * 110.94712 * 334.38920 * 4 2 1 30 30 H 1.08997 * 110.94879 * 98.09710 * 4 2 1 31 31 H 1.07990 * 120.07565 * 359.62513 * 6 5 4 32 32 H 1.09003 * 109.47033 * 299.99417 * 11 10 8 33 33 H 1.09005 * 109.47106 * 59.99665 * 11 10 8 34 34 H 1.08997 * 109.47274 * 300.00288 * 12 11 10 35 35 H 1.09008 * 109.46978 * 59.99564 * 12 11 10 36 36 H 1.09003 * 109.47181 * 299.99956 * 13 12 11 37 37 H 1.08993 * 109.47431 * 60.00540 * 13 12 11 38 38 H 0.96998 * 120.00556 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.90639 * 180.19782 * 22 7 6 40 40 H 1.07990 * 119.78193 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0778 -0.7921 -1.2107 5 6 3.3080 -1.4542 -0.6199 6 6 4.3945 -2.0604 -1.2002 7 6 5.4086 -2.5898 -0.3953 8 6 6.5795 -3.2434 -1.0088 9 8 6.6664 -3.3234 -2.2181 10 8 7.5531 -3.7520 -0.2282 11 6 8.6756 -4.3816 -0.9005 12 6 9.6716 -4.8945 0.1414 13 6 10.8541 -5.5585 -0.5670 14 6 11.8348 -6.0642 0.4594 15 1 11.6350 -5.9256 1.5117 16 6 12.9878 -6.7031 0.0551 17 7 13.2320 -6.8706 -1.2263 18 14 14.2039 -7.3294 1.3271 19 1 13.7007 -7.0168 2.6889 20 1 14.3596 -8.7990 1.1816 21 1 15.5184 -6.6697 1.1222 22 6 5.3025 -2.4951 0.9955 23 6 4.2082 -1.8896 1.5658 24 6 3.1932 -1.3636 0.7644 25 8 2.0391 -0.7399 1.1222 26 1 -0.3633 -1.0260 0.0573 27 1 -0.3633 0.5626 0.8600 28 1 -0.3634 0.4635 -0.9172 29 1 1.3573 -1.5378 -1.5468 30 1 2.3499 -0.1205 -2.0250 31 1 4.4664 -2.1277 -2.2756 32 1 8.3168 -5.2165 -1.5025 33 1 9.1676 -3.6536 -1.5455 34 1 10.0303 -4.0595 0.7431 35 1 9.1798 -5.6225 0.7868 36 1 10.4950 -6.3937 -1.1684 37 1 11.3460 -4.8310 -1.2124 38 1 14.0429 -7.3203 -1.5109 39 1 6.0828 -2.8985 1.6237 40 1 4.1334 -1.8198 2.6409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850063637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:23 Heat of formation + Delta-G solvation = -129.404033 kcal Electronic energy + Delta-G solvation = -21528.029398 eV Core-core repulsion = 18078.854874 eV Total energy + Delta-G solvation = -3449.174524 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.35713 -41.40127 -38.63215 -37.67453 -35.93601 -34.26542 -33.71230 -32.29765 -31.52911 -29.08587 -27.68073 -25.80631 -24.52683 -23.01261 -22.71820 -22.17009 -21.82230 -19.00124 -18.59633 -18.59014 -17.80866 -17.68152 -17.54400 -16.50211 -16.39130 -15.68297 -15.42110 -15.29816 -14.73952 -14.45305 -14.23473 -14.12863 -13.92670 -13.87587 -13.75181 -13.42427 -13.35889 -12.98581 -12.84872 -12.50710 -12.40297 -12.24229 -12.09494 -11.90092 -11.86235 -11.74714 -11.45819 -11.41912 -11.22064 -10.57819 -10.10221 -9.36683 -8.21660 -6.33052 -0.44534 0.18298 1.36926 1.41700 1.42069 1.53558 1.57409 2.09684 2.41646 2.58565 3.12265 3.31876 3.46530 3.57463 3.72252 3.99015 4.00067 4.03280 4.05409 4.17851 4.22019 4.39845 4.43416 4.62121 4.71072 4.77593 4.80068 4.81644 4.90400 5.03153 5.05177 5.07770 5.15371 5.20299 5.24660 5.38017 5.40705 5.50636 5.64127 5.80514 6.01416 6.19223 6.62532 6.83169 7.36412 8.90771 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.048815 B = 0.002251 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.452073 B =12436.513757 C =12954.298206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.069 3.931 3 H 0.103 0.897 4 C -0.102 4.102 5 C -0.195 4.195 6 C -0.010 4.010 7 C -0.174 4.174 8 C 0.508 3.492 9 O -0.544 6.544 10 O -0.350 6.350 11 C 0.078 3.922 12 C -0.093 4.093 13 C 0.025 3.975 14 C -0.541 4.541 15 H 0.066 0.934 16 C -0.003 4.003 17 N -0.934 5.934 18 Si 0.970 3.030 19 H -0.259 1.259 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.020 4.020 23 C -0.153 4.153 24 C 0.139 3.861 25 O -0.309 6.309 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.139 0.861 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.068 0.932 36 H -0.003 1.003 37 H -0.003 1.003 38 H 0.264 0.736 39 H 0.159 0.841 40 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.495 15.737 3.955 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.121 0.879 4 C -0.138 4.138 5 C -0.196 4.196 6 C -0.028 4.028 7 C -0.176 4.176 8 C 0.356 3.644 9 O -0.436 6.436 10 O -0.267 6.267 11 C 0.005 3.995 12 C -0.131 4.131 13 C -0.013 4.013 14 C -0.579 4.579 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.574 5.574 18 Si 0.794 3.206 19 H -0.183 1.183 20 H -0.204 1.204 21 H -0.204 1.204 22 C -0.038 4.038 23 C -0.171 4.171 24 C 0.092 3.908 25 O -0.223 6.223 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.121 0.879 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.157 0.843 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.015 0.985 37 H 0.015 0.985 38 H 0.073 0.927 39 H 0.176 0.824 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -27.458 15.647 3.704 31.820 hybrid contribution 1.177 -0.647 -0.237 1.364 sum -26.281 15.000 3.466 30.458 Atomic orbital electron populations 1.21927 0.90122 1.03695 1.04635 1.23782 0.97305 0.95646 0.81859 0.87909 1.22014 0.92967 0.99828 0.99033 1.20908 0.98492 1.05975 0.94204 1.20350 0.89979 0.91971 1.00534 1.18926 0.94883 1.08824 0.94938 1.21474 0.82712 0.75260 0.84979 1.90805 1.79062 1.57079 1.16654 1.86511 1.30894 1.68067 1.41187 1.23182 0.84055 0.96382 0.95876 1.21460 0.94118 1.00283 0.97194 1.18948 0.92322 0.94490 0.95491 1.21656 1.05221 1.37171 0.93872 0.91573 1.26030 1.00315 0.96228 0.97505 1.70108 1.27147 1.43773 1.16375 0.85322 0.78197 0.77855 0.79207 1.18312 1.20432 1.20438 1.21365 0.96898 0.92690 0.92897 1.20470 0.91709 1.03472 1.01450 1.20147 0.86327 0.91224 0.93078 1.86820 1.33874 1.61829 1.39753 0.91787 0.90908 0.87866 0.87734 0.86854 0.84344 0.91862 0.91835 0.91275 0.91304 0.98479 0.98460 0.92702 0.82370 0.82289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.58 71.98 0.69 -0.16 16 2 C 0.07 0.71 4.26 31.18 0.13 0.84 16 3 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 4 C -0.10 -1.11 6.65 30.74 0.20 -0.90 16 5 C -0.19 -3.58 6.25 -19.55 -0.12 -3.70 16 6 C -0.01 -0.23 9.58 22.44 0.21 -0.01 16 7 C -0.17 -4.52 5.88 -20.07 -0.12 -4.64 16 8 C 0.51 16.75 7.89 70.25 0.55 17.30 16 9 O -0.54 -20.79 16.15 19.82 0.32 -20.47 16 10 O -0.35 -11.96 9.48 -56.59 -0.54 -12.49 16 11 C 0.08 2.99 5.48 71.98 0.39 3.39 16 12 C -0.09 -3.88 5.53 30.59 0.17 -3.71 16 13 C 0.02 1.31 4.97 29.85 0.15 1.46 16 14 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.54 16 16 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 17 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 18 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 19 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 20 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 22 C -0.02 -0.43 9.59 22.46 0.22 -0.22 16 23 C -0.15 -2.79 10.05 22.42 0.23 -2.57 16 24 C 0.14 2.63 7.05 22.83 0.16 2.79 16 25 O -0.31 -5.28 10.79 -93.25 -1.01 -6.28 16 26 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.10 0.95 7.93 -2.39 -0.02 0.93 16 30 H 0.11 0.83 8.14 -2.39 -0.02 0.82 16 31 H 0.14 3.07 7.66 -2.92 -0.02 3.05 16 32 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.06 2.46 8.14 -2.38 -0.02 2.44 16 34 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.07 2.75 8.14 -2.38 -0.02 2.74 16 36 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.16 3.05 7.61 -2.91 -0.02 3.03 16 40 H 0.16 2.16 8.06 -2.92 -0.02 2.13 16 Total: -1.00 -70.20 344.75 5.68 -64.52 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: 1.03 Total: 5.70 kcal Atomic # 6 Polarization: -23.93 SS G_CDS: 3.57 Total: -20.36 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.28 Total: -56.85 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.22 Total: -39.25 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.20 5.68 -64.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850063637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.882 kcal (2) G-P(sol) polarization free energy of solvation -70.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds