Wall clock time and date at job start Tue Mar 31 2020 06:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08989 * 110.66204 * 2 1 4 4 C 1.54698 * 110.74402 * 123.20875 * 2 1 3 5 5 C 1.51683 * 101.91737 * 93.21881 * 4 2 1 6 6 C 1.37287 * 132.05757 * 195.63347 * 5 4 2 7 7 C 1.39869 * 119.84920 * 179.06717 * 6 5 4 8 8 C 1.47476 * 120.26433 * 180.02562 * 7 6 5 9 9 O 1.21505 * 120.00042 * 359.97170 * 8 7 6 10 10 O 1.34749 * 119.99366 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99304 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46835 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47339 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47143 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00063 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99959 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00385 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99910 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46724 * 90.00013 * 18 16 14 20 20 H 1.48499 * 109.47014 * 209.99762 * 18 16 14 21 21 H 1.48497 * 109.47107 * 330.00080 * 18 16 14 22 22 C 1.39808 * 119.46583 * 0.02562 * 7 6 5 23 23 C 1.37455 * 120.19109 * 0.18438 * 22 7 6 24 24 C 1.39205 * 106.99931 * 15.15171 * 5 4 2 25 25 O 1.35981 * 111.15673 * 1.46814 * 24 5 4 26 26 H 1.09003 * 109.46627 * 296.79501 * 1 2 3 27 27 H 1.08996 * 109.47334 * 56.78946 * 1 2 3 28 28 H 1.08997 * 109.47330 * 176.79141 * 1 2 3 29 29 H 1.08994 * 110.94150 * 335.06541 * 4 2 1 30 30 H 1.08998 * 110.96872 * 211.38395 * 4 2 1 31 31 H 1.07995 * 120.07575 * 359.06195 * 6 5 4 32 32 H 1.09000 * 109.47188 * 299.99034 * 11 10 8 33 33 H 1.08997 * 109.47726 * 59.99773 * 11 10 8 34 34 H 1.09005 * 109.47222 * 299.99882 * 12 11 10 35 35 H 1.08998 * 109.47493 * 59.99899 * 12 11 10 36 36 H 1.09005 * 109.46942 * 300.00146 * 13 12 11 37 37 H 1.08998 * 109.46835 * 59.99589 * 13 12 11 38 38 H 0.96993 * 119.99988 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.90394 * 180.46447 * 22 7 6 40 40 H 1.08002 * 119.77638 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0780 -0.7923 1.2104 5 6 2.2669 -2.1764 0.6192 6 6 2.4544 -3.4065 1.1993 7 6 2.5839 -4.5432 0.3947 8 6 2.7851 -5.8691 1.0082 9 8 2.8396 -5.9772 2.2172 10 8 2.9087 -6.9606 0.2278 11 6 3.1051 -8.2326 0.9000 12 6 3.2225 -9.3471 -0.1416 13 6 3.4300 -10.6874 0.5667 14 6 3.5463 -11.7850 -0.4593 15 1 3.4784 -11.5502 -1.5113 16 6 3.7392 -13.0889 -0.0550 17 7 3.8412 -14.0469 -0.9504 18 14 3.8558 -13.4951 1.7646 19 1 2.5004 -13.7935 2.2929 20 1 4.7320 -14.6793 1.9523 21 1 4.4276 -12.3354 2.4950 22 6 2.5210 -4.4122 -0.9958 23 6 2.3372 -3.1751 -1.5660 24 6 2.2110 -2.0388 -0.7649 25 8 2.0429 -0.7377 -1.1224 26 1 -0.3633 0.4633 0.9174 27 1 -0.3634 0.5628 -0.8598 28 1 -0.3634 -1.0260 -0.0575 29 1 1.3527 -0.8119 2.0238 30 1 3.0287 -0.3801 1.5484 31 1 2.5020 -3.4962 2.2745 32 1 4.0181 -8.1925 1.4941 33 1 2.2555 -8.4337 1.5526 34 1 2.3092 -9.3871 -0.7354 35 1 4.0718 -9.1463 -0.7945 36 1 4.3434 -10.6471 1.1602 37 1 2.5809 -10.8884 1.2199 38 1 3.9766 -14.9642 -0.6659 39 1 2.6126 -5.2862 -1.6236 40 1 2.2892 -3.0818 -2.6409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850063638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:26 Heat of formation + Delta-G solvation = -108.124489 kcal Electronic energy + Delta-G solvation = -21691.719848 eV Core-core repulsion = 18243.468074 eV Total energy + Delta-G solvation = -3448.251774 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.70651 -40.21525 -37.75132 -36.38645 -34.07668 -33.63450 -31.92156 -31.34759 -30.72359 -27.79893 -27.15741 -24.61322 -22.79055 -22.42672 -22.04828 -20.78492 -20.20185 -17.94654 -17.57002 -17.05080 -16.68437 -16.44570 -16.33485 -16.09704 -14.62315 -14.52687 -14.24929 -14.18911 -14.01463 -13.57984 -13.39237 -13.05256 -12.83997 -12.73794 -12.64474 -12.60275 -12.30632 -11.92784 -11.69329 -11.28318 -11.15752 -11.04401 -10.94319 -10.61634 -10.43148 -10.00941 -9.80602 -9.72386 -9.32167 -9.24637 -8.59074 -8.56472 -6.06755 -4.05751 0.46468 0.95986 2.41354 2.70802 2.84646 3.30234 3.37846 3.41414 3.46266 3.91112 4.07867 4.34763 4.43094 4.43281 4.62890 4.66980 4.77132 4.93613 5.07154 5.10009 5.23003 5.26553 5.31602 5.34800 5.46970 5.50099 5.59749 5.62978 5.76514 5.88864 5.93133 6.01278 6.13839 6.35760 6.39548 6.65826 6.71334 6.80351 7.21507 7.32868 7.72641 7.87199 8.49998 8.97551 9.54774 11.06375 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043977 B = 0.002411 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.547407 B =11609.715102 C =12047.294187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.075 3.925 3 H 0.119 0.881 4 C -0.104 4.104 5 C -0.190 4.190 6 C -0.006 4.006 7 C -0.152 4.152 8 C 0.509 3.491 9 O -0.514 6.514 10 O -0.351 6.351 11 C 0.067 3.933 12 C -0.101 4.101 13 C -0.011 4.011 14 C -0.521 4.521 15 H 0.074 0.926 16 C 0.067 3.933 17 N -0.901 5.901 18 Si 0.879 3.121 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.265 1.265 22 C -0.023 4.023 23 C -0.152 4.152 24 C 0.140 3.860 25 O -0.296 6.296 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.140 0.860 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.067 0.933 36 H 0.019 0.981 37 H 0.015 0.985 38 H 0.264 0.736 39 H 0.152 0.848 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.435 30.783 2.618 31.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.020 3.980 3 H 0.136 0.864 4 C -0.141 4.141 5 C -0.191 4.191 6 C -0.024 4.024 7 C -0.154 4.154 8 C 0.354 3.646 9 O -0.404 6.404 10 O -0.268 6.268 11 C -0.006 4.006 12 C -0.139 4.139 13 C -0.048 4.048 14 C -0.559 4.559 15 H 0.092 0.908 16 C -0.135 4.135 17 N -0.540 5.540 18 Si 0.707 3.293 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.190 1.190 22 C -0.041 4.041 23 C -0.171 4.171 24 C 0.094 3.906 25 O -0.209 6.209 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.157 0.843 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.037 0.963 37 H 0.033 0.967 38 H 0.073 0.927 39 H 0.169 0.831 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.351 30.628 2.740 31.212 hybrid contribution 0.064 -0.455 1.212 1.296 sum -5.287 30.173 3.951 30.887 Atomic orbital electron populations 1.22268 0.93875 1.03555 1.03308 1.23493 0.94955 0.96467 0.83107 0.86370 1.21868 1.02976 0.90796 0.98467 1.20599 1.09326 0.95333 0.93873 1.20308 0.92566 0.88968 1.00549 1.18985 1.11755 0.90707 0.93923 1.20902 0.73241 0.85190 0.85227 1.90822 1.47062 1.87089 1.15424 1.86538 1.82123 1.16851 1.41273 1.23521 1.01657 0.78739 0.96674 1.21566 1.02714 0.92490 0.97142 1.19524 0.96582 0.91914 0.96805 1.21051 1.49979 0.90583 0.94299 0.90782 1.25022 0.94539 0.96333 0.97564 1.69907 1.49995 1.00593 1.33526 0.86782 0.78398 0.78153 0.86002 1.20213 1.21292 1.18964 1.21297 0.91710 0.97360 0.93712 1.20275 1.07485 0.88939 1.00370 1.19928 0.92875 0.85053 0.92791 1.86877 1.79130 1.16425 1.38470 0.90421 0.91175 0.91644 0.88640 0.88820 0.84268 0.91426 0.91442 0.91489 0.91460 0.96264 0.96704 0.92651 0.83056 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.87 9.51 37.16 0.35 -0.52 16 2 C 0.08 0.45 4.30 -25.83 -0.11 0.34 16 3 H 0.12 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.10 -0.65 6.65 -26.51 -0.18 -0.83 16 5 C -0.19 -1.81 6.25 -104.12 -0.65 -2.46 16 6 C -0.01 -0.06 9.58 -39.32 -0.38 -0.44 16 7 C -0.15 -1.91 5.88 -104.94 -0.62 -2.53 16 8 C 0.51 7.91 7.89 34.49 0.27 8.18 16 9 O -0.51 -9.13 16.15 -19.27 -0.31 -9.44 16 10 O -0.35 -5.71 9.48 -40.63 -0.38 -6.10 16 11 C 0.07 1.18 5.48 37.16 0.20 1.38 16 12 C -0.10 -2.01 5.53 -26.73 -0.15 -2.16 16 13 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 14 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 15 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 16 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 17 N -0.90 -27.77 13.96 55.43 0.77 -27.00 16 18 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.02 -0.24 9.59 -39.28 -0.38 -0.62 16 23 C -0.15 -1.47 10.05 -39.36 -0.40 -1.87 16 24 C 0.14 1.39 6.91 -38.71 -0.27 1.13 16 25 O -0.30 -2.73 10.82 -19.68 -0.21 -2.95 16 26 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 29 H 0.10 0.46 7.92 -51.93 -0.41 0.05 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.14 1.47 7.66 -52.49 -0.40 1.06 16 32 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 37 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.15 1.49 7.61 -52.49 -0.40 1.09 16 40 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 340.94 15.07 5.14 5.14 Total: -1.00 -32.83 340.94 -8.29 -41.12 By element: Atomic # 1 Polarization: 2.02 SS G_CDS: -5.79 Total: -3.77 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -2.83 Total: -14.06 kcal Atomic # 7 Polarization: -27.77 SS G_CDS: 0.77 Total: -27.00 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.91 Total: -18.49 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -32.83 -8.29 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850063638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.008 kcal (2) G-P(sol) polarization free energy of solvation -32.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds