Wall clock time and date at job start Tue Mar 31 2020 06:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08989 * 110.66204 * 2 1 4 4 C 1.54698 * 110.74402 * 123.20875 * 2 1 3 5 5 C 1.51683 * 101.91737 * 93.21881 * 4 2 1 6 6 C 1.37287 * 132.05757 * 195.63347 * 5 4 2 7 7 C 1.39869 * 119.84920 * 179.06717 * 6 5 4 8 8 C 1.47476 * 120.26433 * 180.02562 * 7 6 5 9 9 O 1.21505 * 120.00042 * 359.97170 * 8 7 6 10 10 O 1.34749 * 119.99366 * 179.97438 * 8 7 6 11 11 C 1.45201 * 116.99304 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46835 * 179.97438 * 11 10 8 13 13 C 1.53007 * 109.47339 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47143 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00063 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99959 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00385 * 180.02562 * 16 14 13 18 18 Si 1.86804 * 119.99910 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.46724 * 90.00013 * 18 16 14 20 20 H 1.48499 * 109.47014 * 209.99762 * 18 16 14 21 21 H 1.48497 * 109.47107 * 330.00080 * 18 16 14 22 22 C 1.39808 * 119.46583 * 0.02562 * 7 6 5 23 23 C 1.37455 * 120.19109 * 0.18438 * 22 7 6 24 24 C 1.39205 * 106.99931 * 15.15171 * 5 4 2 25 25 O 1.35981 * 111.15673 * 1.46814 * 24 5 4 26 26 H 1.09003 * 109.46627 * 296.79501 * 1 2 3 27 27 H 1.08996 * 109.47334 * 56.78946 * 1 2 3 28 28 H 1.08997 * 109.47330 * 176.79141 * 1 2 3 29 29 H 1.08994 * 110.94150 * 335.06541 * 4 2 1 30 30 H 1.08998 * 110.96872 * 211.38395 * 4 2 1 31 31 H 1.07995 * 120.07575 * 359.06195 * 6 5 4 32 32 H 1.09000 * 109.47188 * 299.99034 * 11 10 8 33 33 H 1.08997 * 109.47726 * 59.99773 * 11 10 8 34 34 H 1.09005 * 109.47222 * 299.99882 * 12 11 10 35 35 H 1.08998 * 109.47493 * 59.99899 * 12 11 10 36 36 H 1.09005 * 109.46942 * 300.00146 * 13 12 11 37 37 H 1.08998 * 109.46835 * 59.99589 * 13 12 11 38 38 H 0.96993 * 119.99988 * 180.02562 * 17 16 14 39 39 H 1.07996 * 119.90394 * 180.46447 * 22 7 6 40 40 H 1.08002 * 119.77638 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9146 1.0198 0.0000 4 6 2.0780 -0.7923 1.2104 5 6 2.2669 -2.1764 0.6192 6 6 2.4544 -3.4065 1.1993 7 6 2.5839 -4.5432 0.3947 8 6 2.7851 -5.8691 1.0082 9 8 2.8396 -5.9772 2.2172 10 8 2.9087 -6.9606 0.2278 11 6 3.1051 -8.2326 0.9000 12 6 3.2225 -9.3471 -0.1416 13 6 3.4300 -10.6874 0.5667 14 6 3.5463 -11.7850 -0.4593 15 1 3.4784 -11.5502 -1.5113 16 6 3.7392 -13.0889 -0.0550 17 7 3.8412 -14.0469 -0.9504 18 14 3.8558 -13.4951 1.7646 19 1 2.5004 -13.7935 2.2929 20 1 4.7320 -14.6793 1.9523 21 1 4.4276 -12.3354 2.4950 22 6 2.5210 -4.4122 -0.9958 23 6 2.3372 -3.1751 -1.5660 24 6 2.2110 -2.0388 -0.7649 25 8 2.0429 -0.7377 -1.1224 26 1 -0.3633 0.4633 0.9174 27 1 -0.3634 0.5628 -0.8598 28 1 -0.3634 -1.0260 -0.0575 29 1 1.3527 -0.8119 2.0238 30 1 3.0287 -0.3801 1.5484 31 1 2.5020 -3.4962 2.2745 32 1 4.0181 -8.1925 1.4941 33 1 2.2555 -8.4337 1.5526 34 1 2.3092 -9.3871 -0.7354 35 1 4.0718 -9.1463 -0.7945 36 1 4.3434 -10.6471 1.1602 37 1 2.5809 -10.8884 1.2199 38 1 3.9766 -14.9642 -0.6659 39 1 2.6126 -5.2862 -1.6236 40 1 2.2892 -3.0818 -2.6409 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850063638.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:18:25 Heat of formation + Delta-G solvation = -126.305489 kcal Electronic energy + Delta-G solvation = -21692.508235 eV Core-core repulsion = 18243.468074 eV Total energy + Delta-G solvation = -3449.040161 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.40336 -41.40688 -38.62346 -37.66772 -35.93322 -34.23704 -33.87930 -32.07631 -31.55983 -29.45930 -27.85143 -25.81299 -24.34122 -23.16508 -22.60495 -22.10763 -21.74805 -19.03867 -18.92606 -18.27687 -17.85067 -17.67814 -17.31524 -16.82260 -16.30356 -15.73782 -15.34444 -15.26379 -14.82143 -14.64443 -14.50712 -14.22854 -14.06759 -13.80486 -13.61784 -13.57972 -13.23866 -13.02645 -12.85811 -12.61325 -12.19361 -12.13954 -12.02998 -11.89227 -11.82928 -11.76714 -11.55147 -11.40077 -11.35515 -10.77405 -10.08860 -9.35988 -8.30084 -6.34992 -0.43791 0.19171 1.36954 1.37540 1.38503 1.50270 1.55922 2.14892 2.35780 2.59937 3.04960 3.34601 3.47696 3.57274 3.75698 3.93066 4.00467 4.02213 4.03665 4.18719 4.26741 4.37274 4.40475 4.59180 4.70314 4.74171 4.76355 4.77756 4.88871 4.95935 5.00637 5.04464 5.16010 5.19759 5.23450 5.31389 5.39493 5.48526 5.49089 5.62285 6.01767 6.25894 6.63112 6.73037 7.29392 8.86379 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.043977 B = 0.002411 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.547407 B =11609.715102 C =12047.294187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.146 0.854 4 C -0.102 4.102 5 C -0.192 4.192 6 C -0.010 4.010 7 C -0.175 4.175 8 C 0.510 3.490 9 O -0.541 6.541 10 O -0.353 6.353 11 C 0.075 3.925 12 C -0.092 4.092 13 C -0.010 4.010 14 C -0.533 4.533 15 H 0.036 0.964 16 C 0.004 3.996 17 N -0.949 5.949 18 Si 0.950 3.050 19 H -0.266 1.266 20 H -0.283 1.283 21 H -0.246 1.246 22 C -0.023 4.023 23 C -0.155 4.155 24 C 0.138 3.862 25 O -0.307 6.307 26 H 0.098 0.902 27 H 0.072 0.928 28 H 0.046 0.954 29 H 0.112 0.888 30 H 0.108 0.892 31 H 0.140 0.860 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.025 0.975 37 H 0.025 0.975 38 H 0.267 0.733 39 H 0.156 0.844 40 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.795 33.336 4.156 34.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.016 3.984 3 H 0.163 0.837 4 C -0.139 4.139 5 C -0.193 4.193 6 C -0.029 4.029 7 C -0.176 4.176 8 C 0.358 3.642 9 O -0.433 6.433 10 O -0.269 6.269 11 C 0.002 3.998 12 C -0.129 4.129 13 C -0.047 4.047 14 C -0.571 4.571 15 H 0.054 0.946 16 C -0.193 4.193 17 N -0.590 5.590 18 Si 0.773 3.227 19 H -0.191 1.191 20 H -0.209 1.209 21 H -0.170 1.170 22 C -0.041 4.041 23 C -0.174 4.174 24 C 0.092 3.908 25 O -0.221 6.221 26 H 0.117 0.883 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.131 0.869 30 H 0.126 0.874 31 H 0.158 0.842 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.044 0.956 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.174 0.826 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -5.719 33.216 4.268 33.974 hybrid contribution 0.143 -1.102 0.600 1.263 sum -5.576 32.115 4.868 32.957 Atomic orbital electron populations 1.22285 0.93277 1.02669 1.04615 1.23838 0.95504 0.97260 0.81825 0.83661 1.22014 1.04274 0.88608 0.98986 1.20911 1.08040 0.96178 0.94124 1.20355 0.92778 0.89180 1.00541 1.18931 1.14330 0.89515 0.94811 1.21403 0.72244 0.85640 0.84955 1.90798 1.48673 1.87395 1.16465 1.86522 1.82356 1.16729 1.41311 1.23228 1.02088 0.78850 0.95646 1.21324 1.02529 0.91773 0.97318 1.19454 0.97123 0.92231 0.95907 1.21395 1.49507 0.92364 0.93830 0.94566 1.26013 0.94159 0.96154 1.02965 1.70059 1.51521 1.01206 1.36185 0.85662 0.78981 0.78490 0.79566 1.19072 1.20907 1.16962 1.21350 0.91556 0.98119 0.93046 1.20471 1.06933 0.88547 1.01408 1.20148 0.92006 0.85574 0.93112 1.86876 1.79080 1.16011 1.40106 0.88305 0.90854 0.93458 0.86948 0.87427 0.84203 0.91082 0.90985 0.91682 0.91731 0.95628 0.95710 0.92408 0.82623 0.82582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.51 71.98 0.68 -0.62 16 2 C 0.07 0.63 4.30 31.17 0.13 0.77 16 3 H 0.15 0.53 8.14 -2.39 -0.02 0.52 16 4 C -0.10 -0.99 6.65 30.74 0.20 -0.78 16 5 C -0.19 -3.32 6.25 -19.54 -0.12 -3.44 16 6 C -0.01 -0.22 9.58 22.44 0.21 0.00 16 7 C -0.17 -4.32 5.88 -20.07 -0.12 -4.44 16 8 C 0.51 15.76 7.89 70.26 0.55 16.32 16 9 O -0.54 -19.14 16.15 19.82 0.32 -18.82 16 10 O -0.35 -11.34 9.48 -56.60 -0.54 -11.87 16 11 C 0.08 2.57 5.48 71.98 0.39 2.97 16 12 C -0.09 -3.60 5.53 30.60 0.17 -3.43 16 13 C -0.01 -0.45 4.04 29.85 0.12 -0.33 16 14 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 15 H 0.04 2.29 7.99 -2.91 -0.02 2.27 16 16 C 0.00 0.24 5.47 84.65 0.46 0.70 16 17 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 18 Si 0.95 44.33 27.47 68.60 1.88 46.21 16 19 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 21 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 22 C -0.02 -0.47 9.59 22.46 0.22 -0.26 16 23 C -0.16 -2.82 10.05 22.41 0.23 -2.60 16 24 C 0.14 2.53 6.91 22.83 0.16 2.69 16 25 O -0.31 -5.01 10.82 -93.34 -1.01 -6.02 16 26 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.54 8.08 -2.39 -0.02 0.52 16 29 H 0.11 0.73 7.92 -2.39 -0.02 0.71 16 30 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.14 2.88 7.66 -2.91 -0.02 2.86 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 34 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 35 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.03 1.16 7.20 -2.38 -0.02 1.14 16 37 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.16 3.01 7.61 -2.91 -0.02 2.99 16 40 H 0.16 2.18 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -71.43 340.94 5.48 -65.95 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: 0.97 Total: 7.03 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 3.55 Total: -23.03 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: 0.30 Total: -59.45 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.23 Total: -36.71 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 1.88 Total: 46.21 kcal Total: -71.43 5.48 -65.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850063638.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.356 kcal (2) G-P(sol) polarization free energy of solvation -71.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds