Wall clock time and date at job start Tue Mar 31 2020 06:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00267 * 2 1 4 4 C 1.38730 * 120.05864 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94553 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05558 * 0.02761 * 5 4 3 7 7 C 1.50704 * 119.94141 * 179.97438 * 6 5 4 8 8 H 1.08998 * 115.56255 * 334.30323 * 7 6 5 9 9 C 1.53000 * 117.49380 * 188.62321 * 7 6 5 10 10 C 1.52994 * 117.50087 * 120.00203 * 7 6 5 11 11 H 1.09007 * 117.51838 * 0.02562 * 10 7 6 12 12 C 1.50696 * 117.50087 * 214.97533 * 10 7 6 13 13 O 1.20830 * 119.99784 * 359.97438 * 12 10 7 14 14 O 1.34231 * 120.00448 * 179.97438 * 12 10 7 15 15 C 1.45198 * 117.00230 * 179.97438 * 14 12 10 16 16 H 1.09003 * 109.46912 * 330.00625 * 15 14 12 17 17 C 1.53000 * 109.46967 * 90.00189 * 15 14 12 18 18 C 1.50694 * 109.47115 * 210.00154 * 15 14 12 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38255 * 120.11070 * 0.24674 * 6 5 4 27 27 C 1.38149 * 120.05622 * 359.45557 * 26 6 5 28 28 H 1.09005 * 109.47054 * 59.99561 * 1 2 3 29 29 H 1.08996 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47148 * 299.99692 * 1 2 3 31 31 H 1.07999 * 120.02879 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97428 * 180.02562 * 5 4 3 33 33 H 1.08999 * 117.50121 * 145.02003 * 9 7 6 34 34 H 1.09006 * 117.52140 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47356 * 299.99990 * 17 15 14 36 36 H 1.09000 * 109.47156 * 59.99715 * 17 15 14 37 37 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 39 39 H 1.08004 * 119.97188 * 179.70690 * 26 6 5 40 40 H 1.07999 * 120.02603 * 180.29150 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 1 4.9890 5.0349 0.4295 9 6 3.1113 6.2569 0.2069 10 6 3.7027 5.9569 -1.1718 11 1 3.0210 5.6036 -1.9456 12 6 4.8315 6.8331 -1.6505 13 8 5.9104 6.7779 -1.1094 14 8 4.6383 7.6750 -2.6780 15 6 5.7697 8.4890 -3.0850 16 1 6.4039 8.6876 -2.2209 17 6 6.5772 7.7439 -4.1497 18 6 5.2719 9.7929 -3.6532 19 1 4.2113 9.9904 -3.7030 20 6 6.1705 10.7339 -4.1094 21 7 7.4621 10.4937 -4.0482 22 14 5.5533 12.3499 -4.8143 23 1 5.3435 12.2039 -6.2771 24 1 4.2693 12.7154 -4.1641 25 1 6.5567 13.4153 -4.5621 26 6 1.9212 3.6047 0.0068 27 6 1.2916 2.3751 0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0209 0.3799 0.0005 32 1 5.1346 2.5750 0.0011 33 1 3.5385 7.0882 0.7677 34 1 2.0407 6.1009 0.3399 35 1 6.9374 6.8007 -3.7388 36 1 5.9431 7.5452 -5.0137 37 1 7.4268 8.3547 -4.4550 38 1 8.0942 11.1556 -4.3695 39 1 1.3343 4.5114 0.0121 40 1 0.2130 2.3202 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850841510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:32 Heat of formation + Delta-G solvation = -78.947019 kcal Electronic energy + Delta-G solvation = -21965.552379 eV Core-core repulsion = 18518.565835 eV Total energy + Delta-G solvation = -3446.986544 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52139 -39.72144 -38.27118 -36.39911 -35.21802 -33.23990 -31.26900 -30.26975 -29.55643 -27.59333 -25.35848 -24.76948 -23.83100 -22.42851 -21.28049 -20.43292 -19.32182 -18.45301 -17.36258 -16.62142 -16.34319 -16.00532 -15.71783 -15.43875 -15.06458 -14.67926 -14.56531 -13.96946 -13.71949 -13.22922 -13.01870 -12.94870 -12.38544 -12.27928 -12.15100 -11.75365 -11.62416 -11.47688 -11.24397 -11.06883 -11.01860 -10.83627 -10.46324 -10.42740 -10.35515 -10.26753 -9.63709 -9.51675 -9.17997 -8.90305 -8.48949 -8.19159 -6.18143 -4.24982 1.15902 1.17768 2.80574 3.00913 3.24879 3.29364 3.32763 3.41445 3.67386 4.06398 4.32574 4.53813 4.63910 4.68039 4.77310 4.80988 4.82101 4.95092 5.12668 5.14717 5.16160 5.23645 5.32561 5.49629 5.58826 5.78308 5.85277 5.96845 6.06853 6.11116 6.22652 6.51396 6.56269 6.65231 6.90032 6.92342 7.14685 7.18150 7.60456 7.73435 7.94393 8.14717 8.65267 8.89983 9.40405 10.89333 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035656 B = 0.002677 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.087516 B =10458.509348 C =10663.646792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.149 4.149 5 C -0.068 4.068 6 C -0.084 4.084 7 C -0.084 4.084 8 H 0.128 0.872 9 C -0.144 4.144 10 C -0.149 4.149 11 H 0.131 0.869 12 C 0.482 3.518 13 O -0.521 6.521 14 O -0.352 6.352 15 C 0.215 3.785 16 H 0.046 0.954 17 C -0.155 4.155 18 C -0.520 4.520 19 H 0.069 0.931 20 C 0.062 3.938 21 N -0.889 5.889 22 Si 0.912 3.088 23 H -0.278 1.278 24 H -0.272 1.272 25 H -0.284 1.284 26 C -0.079 4.079 27 C -0.205 4.205 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.131 0.869 32 H 0.133 0.867 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.016 0.984 36 H 0.037 0.963 37 H 0.099 0.901 38 H 0.266 0.734 39 H 0.129 0.871 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.150 -17.465 8.911 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.074 3.926 4 C -0.167 4.167 5 C -0.086 4.086 6 C -0.084 4.084 7 C -0.102 4.102 8 H 0.146 0.854 9 C -0.181 4.181 10 C -0.168 4.168 11 H 0.149 0.851 12 C 0.325 3.675 13 O -0.412 6.412 14 O -0.267 6.267 15 C 0.163 3.837 16 H 0.064 0.936 17 C -0.213 4.213 18 C -0.559 4.559 19 H 0.087 0.913 20 C -0.140 4.140 21 N -0.527 5.527 22 Si 0.739 3.261 23 H -0.203 1.203 24 H -0.196 1.196 25 H -0.210 1.210 26 C -0.097 4.097 27 C -0.224 4.224 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.035 0.965 36 H 0.056 0.944 37 H 0.118 0.882 38 H 0.076 0.924 39 H 0.147 0.853 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.550 -17.538 8.981 23.361 hybrid contribution -0.365 0.996 -0.524 1.183 sum -12.915 -16.542 8.457 22.626 Atomic orbital electron populations 1.23044 0.78472 1.03846 1.01404 1.86060 1.21333 1.27084 1.88857 1.19051 0.92410 0.84093 0.97006 1.20410 0.91323 0.98602 1.06392 1.20858 1.00258 0.90656 0.96860 1.19047 0.93034 0.93267 1.03070 1.21090 1.00912 0.87762 1.00475 0.85417 1.23154 0.99795 0.99160 0.96002 1.21894 1.00054 1.01422 0.93479 0.85138 1.22225 0.87512 0.79142 0.78651 1.90589 1.27106 1.66568 1.56936 1.86472 1.46120 1.48793 1.45360 1.20654 0.81598 0.87169 0.94323 0.93584 1.22164 1.02097 0.98139 0.98869 1.21029 0.94232 0.98857 1.41733 0.91298 1.24900 0.94716 0.98907 0.95526 1.69903 1.00944 1.35496 1.46371 0.86262 0.78593 0.81914 0.79291 1.20347 1.19624 1.20969 1.20890 0.93991 0.97277 0.97503 1.21184 0.99943 0.92207 1.09023 0.92605 0.88334 0.92669 0.85115 0.84904 0.87490 0.87353 0.96495 0.94418 0.88220 0.92398 0.85342 0.85463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.19 10.50 -19.43 -0.20 -3.39 16 3 C 0.12 1.28 6.69 -39.22 -0.26 1.02 16 4 C -0.15 -1.60 9.99 -39.44 -0.39 -1.99 16 5 C -0.07 -0.77 9.73 -39.61 -0.39 -1.15 16 6 C -0.08 -0.99 5.61 -104.60 -0.59 -1.57 16 7 C -0.08 -1.11 5.55 -91.77 -0.51 -1.62 16 8 H 0.13 1.81 7.67 -51.93 -0.40 1.41 16 9 C -0.14 -1.79 9.56 -26.73 -0.26 -2.04 16 10 C -0.15 -2.31 5.93 -91.78 -0.54 -2.85 16 11 H 0.13 1.83 8.14 -51.92 -0.42 1.40 16 12 C 0.48 10.26 7.71 36.00 0.28 10.54 16 13 O -0.52 -12.39 15.48 -18.75 -0.29 -12.68 16 14 O -0.35 -8.58 9.86 -39.26 -0.39 -8.97 16 15 C 0.21 5.88 2.56 -27.89 -0.07 5.81 16 16 H 0.05 1.38 7.16 -51.93 -0.37 1.01 16 17 C -0.15 -4.01 9.32 37.16 0.35 -3.67 16 18 C -0.52 -14.79 8.90 -34.44 -0.31 -15.10 16 19 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.89 -25.47 11.32 55.43 0.63 -24.84 16 22 Si 0.91 21.19 29.54 -169.99 -5.02 16.17 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C -0.08 -0.82 9.30 -39.61 -0.37 -1.18 16 27 C -0.20 -2.00 9.04 -39.43 -0.36 -2.36 16 28 H 0.06 0.30 7.66 -51.93 -0.40 -0.10 16 29 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.28 7.66 -51.93 -0.40 -0.12 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.34 8.06 -52.49 -0.42 0.91 16 33 H 0.11 1.38 8.14 -51.93 -0.42 0.96 16 34 H 0.11 1.03 6.17 -51.93 -0.32 0.71 16 35 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.10 2.74 6.07 -51.93 -0.32 2.42 16 38 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.13 1.11 6.01 -52.48 -0.32 0.80 16 40 H 0.13 0.94 6.30 -52.49 -0.33 0.61 16 LS Contribution 340.66 15.07 5.13 5.13 Total: -1.00 -32.21 340.66 -8.01 -40.22 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.35 Total: 1.76 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -2.52 Total: -13.40 kcal Atomic # 7 Polarization: -25.47 SS G_CDS: 0.63 Total: -24.84 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.88 Total: -25.04 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.21 -8.01 -40.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850841510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.725 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds