Wall clock time and date at job start Tue Mar 31 2020 06:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35900 * 117.00267 * 2 1 4 4 C 1.38730 * 120.05864 * 179.97438 * 3 2 1 5 5 C 1.38139 * 119.94553 * 180.02562 * 4 3 2 6 6 C 1.38270 * 120.05558 * 0.02761 * 5 4 3 7 7 C 1.50704 * 119.94141 * 179.97438 * 6 5 4 8 8 H 1.08998 * 115.56255 * 334.30323 * 7 6 5 9 9 C 1.53000 * 117.49380 * 188.62321 * 7 6 5 10 10 C 1.52994 * 117.50087 * 120.00203 * 7 6 5 11 11 H 1.09007 * 117.51838 * 0.02562 * 10 7 6 12 12 C 1.50696 * 117.50087 * 214.97533 * 10 7 6 13 13 O 1.20830 * 119.99784 * 359.97438 * 12 10 7 14 14 O 1.34231 * 120.00448 * 179.97438 * 12 10 7 15 15 C 1.45198 * 117.00230 * 179.97438 * 14 12 10 16 16 H 1.09003 * 109.46912 * 330.00625 * 15 14 12 17 17 C 1.53000 * 109.46967 * 90.00189 * 15 14 12 18 18 C 1.50694 * 109.47115 * 210.00154 * 15 14 12 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 15 14 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 14 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.38255 * 120.11070 * 0.24674 * 6 5 4 27 27 C 1.38149 * 120.05622 * 359.45557 * 26 6 5 28 28 H 1.09005 * 109.47054 * 59.99561 * 1 2 3 29 29 H 1.08996 * 109.47496 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47148 * 299.99692 * 1 2 3 31 31 H 1.07999 * 120.02879 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97428 * 180.02562 * 5 4 3 33 33 H 1.08999 * 117.50121 * 145.02003 * 9 7 6 34 34 H 1.09006 * 117.52140 * 359.97438 * 9 7 6 35 35 H 1.09007 * 109.47356 * 299.99990 * 17 15 14 36 36 H 1.09000 * 109.47156 * 59.99715 * 17 15 14 37 37 H 1.08997 * 109.47359 * 180.02562 * 17 15 14 38 38 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 39 39 H 1.08004 * 119.97188 * 179.70690 * 26 6 5 40 40 H 1.07999 * 120.02603 * 180.29150 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5168 0.0011 6 6 3.3019 3.6758 0.0016 7 6 3.9862 5.0185 0.0028 8 1 4.9890 5.0349 0.4295 9 6 3.1113 6.2569 0.2069 10 6 3.7027 5.9569 -1.1718 11 1 3.0210 5.6036 -1.9456 12 6 4.8315 6.8331 -1.6505 13 8 5.9104 6.7779 -1.1094 14 8 4.6383 7.6750 -2.6780 15 6 5.7697 8.4890 -3.0850 16 1 6.4039 8.6876 -2.2209 17 6 6.5772 7.7439 -4.1497 18 6 5.2719 9.7929 -3.6532 19 1 4.2113 9.9904 -3.7030 20 6 6.1705 10.7339 -4.1094 21 7 7.4621 10.4937 -4.0482 22 14 5.5533 12.3499 -4.8143 23 1 5.3435 12.2039 -6.2771 24 1 4.2693 12.7154 -4.1641 25 1 6.5567 13.4153 -4.5621 26 6 1.9212 3.6047 0.0068 27 6 1.2916 2.3751 0.0001 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 4.0209 0.3799 0.0005 32 1 5.1346 2.5750 0.0011 33 1 3.5385 7.0882 0.7677 34 1 2.0407 6.1009 0.3399 35 1 6.9374 6.8007 -3.7388 36 1 5.9431 7.5452 -5.0137 37 1 7.4268 8.3547 -4.4550 38 1 8.0942 11.1556 -4.3695 39 1 1.3343 4.5114 0.0121 40 1 0.2130 2.3202 -0.0006 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850841510.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:31 Heat of formation + Delta-G solvation = -96.217785 kcal Electronic energy + Delta-G solvation = -21966.301296 eV Core-core repulsion = 18518.565835 eV Total energy + Delta-G solvation = -3447.735460 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64500 -41.01115 -39.31944 -37.79403 -36.68929 -35.33912 -32.04005 -31.78258 -30.96422 -28.17547 -27.49455 -26.25164 -24.69630 -23.26668 -23.02742 -21.55963 -20.89905 -19.19454 -18.94794 -18.55982 -17.61634 -16.99618 -16.89505 -16.61108 -16.40660 -16.38055 -15.63506 -15.09827 -14.63148 -14.48525 -14.29967 -14.23833 -13.75569 -13.69978 -13.34305 -13.17603 -12.97251 -12.85348 -12.81423 -12.46270 -12.41293 -12.29249 -12.16271 -11.84344 -11.62624 -11.50786 -11.37913 -11.29818 -11.01509 -10.61178 -9.95985 -9.01290 -8.30025 -6.47359 0.32740 0.39327 1.20772 1.41487 1.44083 1.55202 1.94026 2.39185 2.40491 2.58237 3.00347 3.01926 3.57997 3.64101 3.79077 3.85850 3.98097 4.09960 4.19700 4.35388 4.40787 4.43138 4.50662 4.55957 4.67322 4.72265 4.75264 4.77877 4.80742 4.92340 5.02097 5.10942 5.14656 5.31044 5.39802 5.46744 5.60090 5.67278 5.78971 5.89464 6.06465 6.45999 6.57971 6.95230 7.24738 8.77844 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035656 B = 0.002677 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.087516 B =10458.509348 C =10663.646792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.113 3.887 4 C -0.162 4.162 5 C -0.078 4.078 6 C -0.100 4.100 7 C -0.072 4.072 8 H 0.110 0.890 9 C -0.122 4.122 10 C -0.166 4.166 11 H 0.150 0.850 12 C 0.474 3.526 13 O -0.555 6.555 14 O -0.360 6.360 15 C 0.216 3.784 16 H 0.007 0.993 17 C -0.143 4.143 18 C -0.549 4.549 19 H 0.068 0.932 20 C 0.015 3.985 21 N -0.918 5.918 22 Si 0.986 3.014 23 H -0.266 1.266 24 H -0.264 1.264 25 H -0.277 1.277 26 C -0.076 4.076 27 C -0.204 4.204 28 H 0.064 0.936 29 H 0.117 0.883 30 H 0.066 0.934 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.099 0.901 34 H 0.148 0.852 35 H 0.022 0.978 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.271 0.729 39 H 0.150 0.850 40 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.898 -17.695 8.963 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.068 3.932 4 C -0.180 4.180 5 C -0.096 4.096 6 C -0.100 4.100 7 C -0.090 4.090 8 H 0.128 0.872 9 C -0.159 4.159 10 C -0.185 4.185 11 H 0.167 0.833 12 C 0.320 3.680 13 O -0.447 6.447 14 O -0.276 6.276 15 C 0.163 3.837 16 H 0.025 0.975 17 C -0.200 4.200 18 C -0.586 4.586 19 H 0.086 0.914 20 C -0.185 4.185 21 N -0.555 5.555 22 Si 0.808 3.192 23 H -0.192 1.192 24 H -0.188 1.188 25 H -0.202 1.202 26 C -0.094 4.094 27 C -0.223 4.223 28 H 0.082 0.918 29 H 0.135 0.865 30 H 0.085 0.915 31 H 0.156 0.844 32 H 0.151 0.849 33 H 0.118 0.882 34 H 0.166 0.834 35 H 0.041 0.959 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.168 0.832 40 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.313 -17.796 9.044 25.159 hybrid contribution 0.479 0.932 -0.463 1.145 sum -14.835 -16.864 8.581 24.044 Atomic orbital electron populations 1.23348 0.76430 1.05547 1.02357 1.86045 1.23509 1.26855 1.88650 1.19251 0.92560 0.84887 0.96482 1.20563 0.91997 0.98701 1.06757 1.20965 1.00551 0.91010 0.97113 1.18990 0.93856 0.92221 1.04929 1.21016 1.00718 0.88979 0.98291 0.87155 1.23376 1.01825 0.98198 0.92455 1.21960 0.99070 1.02118 0.95331 0.83251 1.23395 0.88834 0.78535 0.77258 1.90565 1.29005 1.67487 1.57609 1.86465 1.44846 1.49394 1.46935 1.20367 0.82161 0.88115 0.93024 0.97541 1.21993 1.01411 0.97811 0.98818 1.21293 0.94452 0.99907 1.42958 0.91363 1.25881 0.94748 1.02562 0.95317 1.70024 1.02167 1.36848 1.46506 0.85140 0.78262 0.76930 0.78822 1.19154 1.18834 1.20240 1.21120 0.93345 0.98446 0.96500 1.21465 1.01274 0.91500 1.08032 0.91753 0.86470 0.91491 0.84392 0.84859 0.88220 0.83430 0.95921 0.93523 0.89941 0.91943 0.83214 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.34 -6.07 10.50 -92.43 -0.97 -7.04 16 3 C 0.11 2.22 6.69 22.51 0.15 2.37 16 4 C -0.16 -3.35 9.99 22.36 0.22 -3.13 16 5 C -0.08 -1.72 9.73 22.25 0.22 -1.51 16 6 C -0.10 -2.20 5.61 -19.85 -0.11 -2.31 16 7 C -0.07 -1.84 5.55 -11.54 -0.06 -1.90 16 8 H 0.11 3.21 7.67 -2.39 -0.02 3.19 16 9 C -0.12 -2.78 9.56 30.59 0.29 -2.48 16 10 C -0.17 -4.99 5.93 -11.54 -0.07 -5.06 16 11 H 0.15 3.91 8.14 -2.38 -0.02 3.90 16 12 C 0.47 20.71 7.71 71.23 0.55 21.26 16 13 O -0.55 -27.54 15.48 21.95 0.34 -27.20 16 14 O -0.36 -18.02 9.86 -51.43 -0.51 -18.53 16 15 C 0.22 12.26 2.56 29.85 0.08 12.34 16 16 H 0.01 0.43 7.16 -2.39 -0.02 0.41 16 17 C -0.14 -7.59 9.32 71.98 0.67 -6.92 16 18 C -0.55 -31.69 8.90 25.60 0.23 -31.47 16 19 H 0.07 3.85 7.81 -2.91 -0.02 3.82 16 20 C 0.01 0.81 5.30 84.66 0.45 1.26 16 21 N -0.92 -53.36 11.32 21.45 0.24 -53.11 16 22 Si 0.99 43.10 29.54 68.60 2.03 45.13 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 C -0.08 -1.36 9.30 22.25 0.21 -1.15 16 27 C -0.20 -3.38 9.04 22.37 0.20 -3.18 16 28 H 0.06 0.49 7.66 -2.38 -0.02 0.48 16 29 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16 31 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 32 H 0.13 2.76 8.06 -2.91 -0.02 2.74 16 33 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 34 H 0.15 2.19 6.17 -2.38 -0.01 2.17 16 35 H 0.02 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.08 4.67 6.07 -2.39 -0.01 4.66 16 38 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 39 H 0.15 1.94 6.01 -2.91 -0.02 1.92 16 40 H 0.15 1.66 6.30 -2.91 -0.02 1.64 16 Total: -1.00 -71.37 340.66 6.31 -65.06 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: 1.05 Total: 16.29 kcal Atomic # 6 Polarization: -24.74 SS G_CDS: 4.13 Total: -20.60 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: 0.24 Total: -53.11 kcal Atomic # 8 Polarization: -51.63 SS G_CDS: -1.14 Total: -52.76 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -71.37 6.31 -65.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850841510.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.159 kcal (2) G-P(sol) polarization free energy of solvation -71.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds