Wall clock time and date at job start Tue Mar 31 2020 06:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 H 1.09001 * 109.47229 * 55.00527 * 3 2 1 5 5 C 1.50705 * 109.47319 * 175.00242 * 3 2 1 6 6 H 1.08001 * 119.99901 * 119.99443 * 5 3 2 7 7 C 1.37876 * 119.99867 * 300.00523 * 5 3 2 8 8 N 1.31511 * 120.00222 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46917 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47119 * 119.99791 * 9 7 5 12 12 H 1.48495 * 109.47339 * 239.99995 * 9 7 5 13 13 O 1.45198 * 109.47243 * 295.00089 * 3 2 1 14 14 C 1.34719 * 116.99687 * 90.00161 * 13 3 2 15 15 O 1.21470 * 119.99802 * 0.02562 * 14 13 3 16 16 C 1.47725 * 119.99829 * 180.02562 * 14 13 3 17 17 C 1.39646 * 120.23134 * 359.97438 * 16 14 13 18 18 C 1.37737 * 119.73737 * 180.12550 * 17 16 14 19 19 C 1.38811 * 120.51615 * 359.97438 * 18 17 16 20 20 C 1.38085 * 120.01457 * 359.77977 * 19 18 17 21 21 C 1.38328 * 120.02228 * 0.34186 * 20 19 18 22 22 C 1.50764 * 121.33878 * 180.64558 * 20 19 18 23 23 C 1.52954 * 109.78462 * 342.76525 * 22 20 19 24 24 O 1.43210 * 108.48884 * 49.23007 * 23 22 20 25 25 C 1.42706 * 113.14041 * 289.31320 * 24 23 22 26 26 H 1.08998 * 109.46684 * 299.99376 * 1 2 3 27 27 H 1.08994 * 109.47423 * 59.99518 * 1 2 3 28 28 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 240.00228 * 2 1 3 30 30 H 1.08994 * 109.47675 * 119.99993 * 2 1 3 31 31 H 0.97003 * 120.00041 * 180.02562 * 8 7 5 32 32 H 1.08005 * 120.13295 * 0.15716 * 17 16 14 33 33 H 1.08005 * 119.74082 * 179.97438 * 18 17 16 34 34 H 1.08003 * 119.91813 * 179.76356 * 21 20 19 35 35 H 1.09002 * 109.42200 * 102.86210 * 22 20 19 36 36 H 1.09006 * 109.42498 * 222.66881 * 22 20 19 37 37 H 1.08999 * 109.62698 * 289.53879 * 23 22 20 38 38 H 1.08993 * 109.80541 * 169.03134 * 23 22 20 39 39 H 1.08994 * 109.33673 * 291.68058 * 25 24 23 40 40 H 1.09003 * 109.20563 * 172.08939 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4063 0.3373 2.1731 9 14 6.0050 0.8801 1.3809 10 1 6.5987 1.5455 0.1934 11 1 6.4001 1.6157 2.6090 12 1 6.4963 -0.5189 1.4623 13 8 1.6558 2.0917 -1.2407 14 6 0.4683 2.7278 -1.2559 15 8 -0.2268 2.7401 -0.2598 16 6 0.0117 3.4102 -2.4839 17 6 0.8073 3.3995 -3.6315 18 6 0.3728 4.0413 -4.7701 19 6 -0.8500 4.6982 -4.7858 20 6 -1.6434 4.7079 -3.6557 21 6 -1.2171 4.0692 -2.5052 22 6 -2.9830 5.3997 -3.6441 23 6 -3.0744 6.3708 -4.8223 24 8 -2.6749 5.6805 -6.0118 25 6 -1.2773 5.3952 -6.0520 26 1 -0.3632 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8295 -0.0605 2.9501 32 1 1.7594 2.8896 -3.6265 33 1 0.9882 4.0334 -5.6576 34 1 -1.8373 4.0812 -1.6211 35 1 -3.7757 4.6560 -3.7251 36 1 -3.0983 5.9507 -2.7106 37 1 -2.4110 7.2184 -4.6505 38 1 -4.0997 6.7242 -4.9308 39 1 -0.7215 6.3270 -6.1562 40 1 -1.0670 4.7521 -6.9066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850979209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:51 Heat of formation + Delta-G solvation = -120.960104 kcal Electronic energy + Delta-G solvation = -22862.834924 eV Core-core repulsion = 19414.026556 eV Total energy + Delta-G solvation = -3448.808368 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.52316 -39.42847 -37.52600 -35.72874 -33.58880 -33.20088 -31.99212 -31.27331 -29.58935 -27.46304 -26.22766 -24.09876 -23.45115 -22.58121 -21.63379 -20.18543 -19.25382 -17.50348 -16.97616 -16.71742 -16.09226 -15.93032 -15.65306 -15.25832 -14.90130 -14.63242 -14.24313 -13.85010 -13.44577 -13.29314 -13.08805 -12.83192 -12.46541 -12.40648 -12.18074 -11.59542 -11.46033 -11.39780 -11.17579 -11.14705 -10.98519 -10.89102 -10.65741 -10.28991 -10.04034 -9.80662 -9.64810 -9.38802 -8.87589 -8.81643 -8.70274 -8.46930 -6.20115 -4.27211 0.80707 1.30500 2.97481 3.22301 3.28988 3.33422 3.55254 3.62135 3.91023 4.31183 4.42780 4.49074 4.63796 4.83957 4.93706 5.06863 5.11751 5.13551 5.23893 5.34832 5.37411 5.54288 5.65619 5.68240 5.83023 5.96140 6.22387 6.26736 6.30819 6.35450 6.43201 6.49343 6.79101 6.82426 6.86903 6.95844 7.15906 7.22763 7.59993 7.72107 7.91985 8.13710 8.60408 8.86667 9.38024 10.86756 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.003501 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.935048 B = 7995.528099 C = 8506.261531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.221 3.779 4 H 0.048 0.952 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.350 6.350 14 C 0.495 3.505 15 O -0.512 6.512 16 C -0.107 4.107 17 C -0.064 4.064 18 C -0.126 4.126 19 C -0.100 4.100 20 C -0.091 4.091 21 C -0.058 4.058 22 C -0.113 4.113 23 C 0.059 3.941 24 O -0.376 6.376 25 C 0.100 3.900 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.033 0.967 29 H 0.042 0.958 30 H 0.109 0.891 31 H 0.266 0.734 32 H 0.144 0.856 33 H 0.130 0.870 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.771 9.532 -14.211 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.266 6.266 14 C 0.339 3.661 15 O -0.404 6.404 16 C -0.108 4.108 17 C -0.082 4.082 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.091 4.091 21 C -0.076 4.076 22 C -0.150 4.150 23 C -0.018 4.018 24 O -0.295 6.295 25 C 0.024 3.976 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.127 0.873 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -10.039 9.353 -13.855 19.499 hybrid contribution 1.151 -0.165 0.642 1.328 sum -8.888 9.188 -13.213 18.385 Atomic orbital electron populations 1.21862 0.98379 0.99051 1.00759 1.22022 0.92649 0.99294 1.03402 1.20720 0.95072 0.88780 0.78520 0.93443 1.21074 0.89594 1.38928 1.06286 0.91258 1.24886 0.99263 0.94751 0.95056 1.69900 1.35306 1.37859 1.09452 0.86230 0.83867 0.77888 0.78222 1.19481 1.20756 1.20695 1.86525 1.33516 1.62337 1.44204 1.20929 0.81087 0.76870 0.87191 1.90768 1.55604 1.58749 1.35234 1.19433 0.96243 1.01746 0.93408 1.21524 0.99526 0.95850 0.91268 1.20946 0.95806 0.98860 0.98785 1.20442 0.95144 0.98642 0.95823 1.19344 0.96559 1.00294 0.92896 1.21195 0.94507 0.93998 0.97921 1.21103 0.94607 0.99296 1.00005 1.22640 1.01140 0.93603 0.84403 1.88065 1.23462 1.77617 1.40309 1.21491 0.82259 0.98853 0.95002 0.92803 0.94966 0.94764 0.93933 0.87274 0.92421 0.83854 0.85164 0.84501 0.89524 0.89438 0.92531 0.88208 0.91416 0.87466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 8.56 37.16 0.32 -2.88 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.90 2.25 -27.88 -0.06 5.84 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.51 8.90 -34.44 -0.31 -14.82 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -24.99 11.29 55.43 0.63 -24.36 16 9 Si 0.91 20.93 29.54 -169.99 -5.02 15.91 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 O -0.35 -8.35 9.07 -40.54 -0.37 -8.72 16 14 C 0.50 10.70 6.35 34.61 0.22 10.92 16 15 O -0.51 -12.09 13.53 -19.24 -0.26 -12.35 16 16 C -0.11 -1.84 5.87 -105.04 -0.62 -2.46 16 17 C -0.06 -0.94 9.62 -39.24 -0.38 -1.32 16 18 C -0.13 -1.48 9.65 -39.55 -0.38 -1.86 16 19 C -0.10 -1.15 5.82 -104.46 -0.61 -1.76 16 20 C -0.09 -1.13 5.77 -104.61 -0.60 -1.73 16 21 C -0.06 -0.87 9.22 -39.10 -0.36 -1.23 16 22 C -0.11 -1.06 6.00 -27.88 -0.17 -1.23 16 23 C 0.06 0.48 6.85 37.13 0.25 0.74 16 24 O -0.38 -3.87 10.80 -35.23 -0.38 -4.25 16 25 C 0.10 0.91 6.65 36.01 0.24 1.15 16 26 H 0.05 1.25 7.79 -51.93 -0.40 0.85 16 27 H 0.03 0.70 6.06 -51.93 -0.31 0.38 16 28 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.14 2.11 7.62 -52.48 -0.40 1.71 16 33 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 34 H 0.14 2.01 7.64 -52.48 -0.40 1.61 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -31.09 329.30 -8.68 -39.77 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.55 Total: 1.60 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -2.69 Total: -12.57 kcal Atomic # 7 Polarization: -24.99 SS G_CDS: 0.63 Total: -24.36 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -1.01 Total: -25.32 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.09 -8.68 -39.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.187 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds