Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 H 1.09001 * 109.47229 * 55.00527 * 3 2 1 5 5 C 1.50705 * 109.47319 * 175.00242 * 3 2 1 6 6 H 1.08001 * 119.99901 * 119.99443 * 5 3 2 7 7 C 1.37876 * 119.99867 * 300.00523 * 5 3 2 8 8 N 1.31511 * 120.00222 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99975 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46917 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47119 * 119.99791 * 9 7 5 12 12 H 1.48495 * 109.47339 * 239.99995 * 9 7 5 13 13 O 1.45198 * 109.47243 * 295.00089 * 3 2 1 14 14 C 1.34719 * 116.99687 * 90.00161 * 13 3 2 15 15 O 1.21470 * 119.99802 * 0.02562 * 14 13 3 16 16 C 1.47725 * 119.99829 * 180.02562 * 14 13 3 17 17 C 1.39646 * 120.23134 * 359.97438 * 16 14 13 18 18 C 1.37737 * 119.73737 * 180.12550 * 17 16 14 19 19 C 1.38811 * 120.51615 * 359.97438 * 18 17 16 20 20 C 1.38085 * 120.01457 * 359.77977 * 19 18 17 21 21 C 1.38328 * 120.02228 * 0.34186 * 20 19 18 22 22 C 1.50764 * 121.33878 * 180.64558 * 20 19 18 23 23 C 1.52954 * 109.78462 * 342.76525 * 22 20 19 24 24 O 1.43210 * 108.48884 * 49.23007 * 23 22 20 25 25 C 1.42706 * 113.14041 * 289.31320 * 24 23 22 26 26 H 1.08998 * 109.46684 * 299.99376 * 1 2 3 27 27 H 1.08994 * 109.47423 * 59.99518 * 1 2 3 28 28 H 1.08996 * 109.47096 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47050 * 240.00228 * 2 1 3 30 30 H 1.08994 * 109.47675 * 119.99993 * 2 1 3 31 31 H 0.97003 * 120.00041 * 180.02562 * 8 7 5 32 32 H 1.08005 * 120.13295 * 0.15716 * 17 16 14 33 33 H 1.08005 * 119.74082 * 179.97438 * 18 17 16 34 34 H 1.08003 * 119.91813 * 179.76356 * 21 20 19 35 35 H 1.09002 * 109.42200 * 102.86210 * 22 20 19 36 36 H 1.09006 * 109.42498 * 222.66881 * 22 20 19 37 37 H 1.08999 * 109.62698 * 289.53879 * 23 22 20 38 38 H 1.08993 * 109.80541 * 169.03134 * 23 22 20 39 39 H 1.08994 * 109.33673 * 291.68058 * 25 24 23 40 40 H 1.09003 * 109.20563 * 172.08939 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8889 -0.6524 7 6 4.1433 0.8784 1.2278 8 7 3.4063 0.3373 2.1731 9 14 6.0050 0.8801 1.3809 10 1 6.5987 1.5455 0.1934 11 1 6.4001 1.6157 2.6090 12 1 6.4963 -0.5189 1.4623 13 8 1.6558 2.0917 -1.2407 14 6 0.4683 2.7278 -1.2559 15 8 -0.2268 2.7401 -0.2598 16 6 0.0117 3.4102 -2.4839 17 6 0.8073 3.3995 -3.6315 18 6 0.3728 4.0413 -4.7701 19 6 -0.8500 4.6982 -4.7858 20 6 -1.6434 4.7079 -3.6557 21 6 -1.2171 4.0692 -2.5052 22 6 -2.9830 5.3997 -3.6441 23 6 -3.0744 6.3708 -4.8223 24 8 -2.6749 5.6805 -6.0118 25 6 -1.2773 5.3952 -6.0520 26 1 -0.3632 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.8295 -0.0605 2.9501 32 1 1.7594 2.8896 -3.6265 33 1 0.9882 4.0334 -5.6576 34 1 -1.8373 4.0812 -1.6211 35 1 -3.7757 4.6560 -3.7251 36 1 -3.0983 5.9507 -2.7106 37 1 -2.4110 7.2184 -4.6505 38 1 -4.0997 6.7242 -4.9308 39 1 -0.7215 6.3270 -6.1562 40 1 -1.0670 4.7521 -6.9066 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850979209.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -138.222099 kcal Electronic energy + Delta-G solvation = -22863.583460 eV Core-core repulsion = 19414.026556 eV Total energy + Delta-G solvation = -3449.556904 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72877 -40.86809 -38.53652 -37.54798 -35.55125 -34.11682 -33.48954 -32.87465 -30.48004 -29.43186 -27.37763 -25.30714 -24.92214 -23.89501 -22.85588 -21.89301 -20.75072 -19.05219 -18.54677 -17.99241 -17.39968 -17.15737 -17.00328 -16.62381 -16.44687 -15.78470 -15.36742 -14.96539 -14.84032 -14.66540 -14.40023 -14.27313 -13.85290 -13.54545 -13.38289 -13.25941 -13.19741 -13.11944 -12.85348 -12.58993 -12.51821 -12.15038 -12.08169 -11.81503 -11.71463 -11.49641 -11.37066 -10.86045 -10.71007 -10.56289 -9.91639 -9.74226 -8.29683 -6.46852 -0.39018 0.25954 1.40603 1.41415 1.53572 1.55483 1.94062 2.39776 2.65018 2.94373 3.00011 3.55642 3.60904 3.79299 3.83235 4.00954 4.20189 4.27623 4.32200 4.34687 4.39671 4.44896 4.51158 4.57011 4.73588 4.77123 4.78866 4.83236 4.94702 5.02491 5.06885 5.16716 5.17750 5.29111 5.36013 5.40495 5.48685 5.62621 5.79291 5.91962 6.06748 6.13244 6.57560 6.92030 7.24416 8.77608 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029625 B = 0.003501 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.935048 B = 7995.528099 C = 8506.261531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.006 0.994 5 C -0.550 4.550 6 H 0.066 0.934 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.263 1.263 11 H -0.276 1.276 12 H -0.270 1.270 13 O -0.356 6.356 14 C 0.490 3.510 15 O -0.543 6.543 16 C -0.139 4.139 17 C -0.073 4.073 18 C -0.114 4.114 19 C -0.090 4.090 20 C -0.094 4.094 21 C -0.065 4.065 22 C -0.114 4.114 23 C 0.058 3.942 24 O -0.391 6.391 25 C 0.099 3.901 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.063 0.937 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.271 0.729 32 H 0.137 0.863 33 H 0.169 0.831 34 H 0.128 0.872 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.122 0.878 39 H 0.092 0.908 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.724 10.617 -16.874 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.272 6.272 14 C 0.337 3.663 15 O -0.436 6.436 16 C -0.140 4.140 17 C -0.091 4.091 18 C -0.132 4.132 19 C -0.090 4.090 20 C -0.094 4.094 21 C -0.084 4.084 22 C -0.151 4.151 23 C -0.018 4.018 24 O -0.309 6.309 25 C 0.023 3.977 26 H 0.055 0.945 27 H 0.051 0.949 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.187 0.813 34 H 0.146 0.854 35 H 0.107 0.893 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.140 0.860 39 H 0.109 0.891 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.012 10.446 -16.534 21.972 hybrid contribution 1.032 -0.416 1.401 1.789 sum -8.981 10.029 -15.133 20.255 Atomic orbital electron populations 1.21710 0.96467 1.00628 0.99905 1.21871 0.94315 0.98051 1.02478 1.20434 0.94742 0.89275 0.78383 0.97631 1.21345 0.90267 1.40069 1.07039 0.91532 1.25824 1.04388 0.93787 0.94272 1.70020 1.37453 1.37897 1.09857 0.85134 0.77483 0.78380 0.78397 1.18733 1.20154 1.19554 1.86507 1.35117 1.62944 1.42675 1.21786 0.79848 0.76117 0.88556 1.90733 1.56095 1.59982 1.36827 1.19290 0.98190 1.04206 0.92360 1.21569 0.99192 0.96715 0.91633 1.21297 0.96142 0.97047 0.98689 1.20929 0.94427 0.97107 0.96574 1.19710 0.97990 0.99555 0.92144 1.21225 0.93702 0.94508 0.98930 1.21209 0.92736 0.99671 1.01499 1.22803 1.02812 0.93148 0.83062 1.88062 1.24010 1.77870 1.40989 1.21727 0.82140 1.00002 0.93868 0.94526 0.94916 0.91805 0.93462 0.89297 0.91971 0.84474 0.81336 0.85359 0.89271 0.88344 0.91496 0.85985 0.89061 0.85301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.97 8.56 71.98 0.62 -5.36 16 2 C -0.13 -6.71 5.49 30.59 0.17 -6.54 16 3 C 0.22 12.63 2.25 29.85 0.07 12.70 16 4 H 0.01 0.37 7.16 -2.39 -0.02 0.36 16 5 C -0.55 -31.70 8.90 25.60 0.23 -31.47 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.95 5.29 84.65 0.45 1.40 16 8 N -0.91 -52.83 11.29 21.45 0.24 -52.59 16 9 Si 0.98 43.14 29.54 68.60 2.03 45.17 16 10 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 11 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 O -0.36 -17.94 9.07 -56.29 -0.51 -18.45 16 14 C 0.49 22.44 6.35 70.33 0.45 22.89 16 15 O -0.54 -27.42 13.53 19.93 0.27 -27.15 16 16 C -0.14 -4.96 5.87 -20.14 -0.12 -5.07 16 17 C -0.07 -2.13 9.62 22.49 0.22 -1.91 16 18 C -0.11 -2.38 9.65 22.29 0.21 -2.16 16 19 C -0.09 -1.80 5.82 -19.76 -0.11 -1.92 16 20 C -0.09 -2.19 5.77 -19.86 -0.11 -2.30 16 21 C -0.07 -1.98 9.22 22.58 0.21 -1.77 16 22 C -0.11 -1.90 6.00 29.85 0.18 -1.72 16 23 C 0.06 0.75 6.85 71.97 0.49 1.25 16 24 O -0.39 -6.54 10.80 -148.98 -1.61 -8.14 16 25 C 0.10 1.36 6.65 71.24 0.47 1.83 16 26 H 0.04 1.77 7.79 -2.39 -0.02 1.75 16 27 H 0.03 1.46 6.06 -2.39 -0.01 1.45 16 28 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 29 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.09 4.99 5.95 -2.39 -0.01 4.98 16 31 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 32 H 0.14 4.10 7.62 -2.91 -0.02 4.07 16 33 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.13 3.98 7.64 -2.91 -0.02 3.96 16 35 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.10 1.42 8.14 -2.38 -0.02 1.41 16 37 H 0.07 0.75 8.07 -2.39 -0.02 0.73 16 38 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -70.57 329.30 4.87 -65.70 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: 1.04 Total: 15.63 kcal Atomic # 6 Polarization: -23.58 SS G_CDS: 3.41 Total: -20.17 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.24 Total: -52.59 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -1.85 Total: -53.74 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -70.57 4.87 -65.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979209.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.519 kcal (2) G-P(sol) polarization free energy of solvation -70.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds