Wall clock time and date at job start Tue Mar 31 2020 06:04:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46878 * 2 1 4 4 H 1.09006 * 109.47470 * 305.00059 * 3 2 1 5 5 C 1.50697 * 109.47060 * 184.99956 * 3 2 1 6 6 H 1.08007 * 119.99862 * 240.00268 * 5 3 2 7 7 C 1.37878 * 120.00294 * 59.99659 * 5 3 2 8 8 N 1.31512 * 119.99541 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00158 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47127 * 90.00466 * 9 7 5 11 11 H 1.48502 * 109.46891 * 210.00345 * 9 7 5 12 12 H 1.48500 * 109.47136 * 330.00115 * 9 7 5 13 13 O 1.45203 * 109.47137 * 65.00075 * 3 2 1 14 14 C 1.34710 * 116.99971 * 269.99593 * 13 3 2 15 15 O 1.21473 * 120.00071 * 359.97438 * 14 13 3 16 16 C 1.47728 * 120.00180 * 180.02562 * 14 13 3 17 17 C 1.39647 * 120.22981 * 359.97435 * 16 14 13 18 18 C 1.37736 * 119.73629 * 180.10257 * 17 16 14 19 19 C 1.39059 * 120.46300 * 359.85368 * 18 17 16 20 20 C 1.37852 * 120.00526 * 0.15416 * 19 18 17 21 21 C 1.38322 * 120.08295 * 359.91257 * 20 19 18 22 22 C 1.50767 * 121.27712 * 180.11089 * 20 19 18 23 23 C 1.52966 * 109.77923 * 342.99157 * 22 20 19 24 24 O 1.43215 * 108.45232 * 49.21127 * 23 22 20 25 25 C 1.42707 * 113.11813 * 289.19779 * 24 23 22 26 26 H 1.09003 * 109.47037 * 60.00315 * 1 2 3 27 27 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47229 * 300.00202 * 1 2 3 29 29 H 1.08997 * 109.47170 * 240.00298 * 2 1 3 30 30 H 1.09000 * 109.46664 * 120.00034 * 2 1 3 31 31 H 0.97000 * 119.99842 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.13074 * 0.09195 * 17 16 14 33 33 H 1.08001 * 119.73715 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.90796 * 179.97438 * 21 20 19 35 35 H 1.08998 * 109.41990 * 222.89969 * 22 20 19 36 36 H 1.08997 * 109.42037 * 103.08494 * 22 20 19 37 37 H 1.09000 * 109.63793 * 289.51967 * 23 22 20 38 38 H 1.08998 * 109.81306 * 168.99915 * 23 22 20 39 39 H 1.09002 * 109.33743 * 172.08357 * 25 24 23 40 40 H 1.09003 * 109.33962 * 291.75720 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5538 -0.3520 -0.7597 11 1 6.3835 0.9215 -2.8164 12 1 6.5575 2.0720 -0.6888 13 8 1.6558 2.0916 1.2407 14 6 0.4684 2.7277 1.2560 15 8 -0.2268 2.7401 0.2600 16 6 0.0123 3.4111 2.4837 17 6 0.8079 3.4003 3.6313 18 6 0.3717 4.0390 4.7711 19 6 -0.8535 4.6966 4.7857 20 6 -1.6423 4.7097 3.6553 21 6 -1.2161 4.0709 2.5048 22 6 -2.9743 5.4158 3.6384 23 6 -3.4379 5.6807 5.0719 24 8 -2.3569 6.2815 5.7942 25 6 -1.2879 5.3741 6.0599 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0604 -2.9501 32 1 1.7614 2.8931 3.6253 33 1 0.9872 4.0310 5.6585 34 1 -1.8365 4.0826 1.6210 35 1 -3.7089 4.7918 3.1295 36 1 -2.8756 6.3632 3.1086 37 1 -3.7175 4.7400 5.5462 38 1 -4.2935 6.3559 5.0647 39 1 -0.4459 5.9223 6.4825 40 1 -1.6227 4.6209 6.7732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850979211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:53 Heat of formation + Delta-G solvation = -120.836834 kcal Electronic energy + Delta-G solvation = -22863.932805 eV Core-core repulsion = 19415.129783 eV Total energy + Delta-G solvation = -3448.803023 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.52740 -39.42998 -37.52411 -35.72793 -33.58957 -33.19812 -31.98851 -31.27517 -29.58771 -27.46339 -26.22736 -24.09526 -23.45327 -22.58975 -21.62985 -20.18559 -19.25262 -17.50324 -16.97923 -16.71227 -16.09697 -15.93570 -15.64224 -15.27636 -14.86161 -14.64585 -14.24288 -13.86923 -13.47188 -13.31024 -12.98681 -12.81918 -12.56599 -12.41159 -12.12234 -11.64963 -11.42712 -11.38314 -11.18472 -11.14978 -10.98171 -10.89153 -10.65457 -10.29700 -10.03899 -9.81611 -9.64887 -9.38442 -8.86978 -8.82635 -8.70855 -8.46365 -6.19807 -4.26975 0.80728 1.30596 2.97479 3.23687 3.29091 3.32578 3.55188 3.61905 3.91041 4.31436 4.42760 4.49114 4.64098 4.84063 4.93467 5.06686 5.11960 5.13584 5.23663 5.34757 5.37382 5.54346 5.65410 5.68422 5.83023 5.96199 6.21709 6.26336 6.30471 6.35480 6.42985 6.49017 6.79022 6.82477 6.86505 6.95319 7.15558 7.22484 7.59916 7.72041 7.91981 8.13789 8.60451 8.86567 9.38187 10.87037 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.003508 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.028976 B = 7978.749976 C = 8525.413114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.272 1.272 13 O -0.350 6.350 14 C 0.495 3.505 15 O -0.512 6.512 16 C -0.107 4.107 17 C -0.064 4.064 18 C -0.126 4.126 19 C -0.100 4.100 20 C -0.090 4.090 21 C -0.058 4.058 22 C -0.113 4.113 23 C 0.059 3.941 24 O -0.376 6.376 25 C 0.101 3.899 26 H 0.053 0.947 27 H 0.033 0.967 28 H 0.031 0.969 29 H 0.109 0.891 30 H 0.042 0.958 31 H 0.266 0.734 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.767 7.635 14.883 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.196 1.196 13 O -0.266 6.266 14 C 0.339 3.661 15 O -0.404 6.404 16 C -0.108 4.108 17 C -0.082 4.082 18 C -0.144 4.144 19 C -0.101 4.101 20 C -0.090 4.090 21 C -0.076 4.076 22 C -0.150 4.150 23 C -0.018 4.018 24 O -0.295 6.295 25 C 0.024 3.976 26 H 0.072 0.928 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.127 0.873 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.148 0.852 34 H 0.155 0.845 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.906 7.704 14.431 19.661 hybrid contribution 0.982 -0.499 -0.506 1.212 sum -9.924 7.205 13.925 18.556 Atomic orbital electron populations 1.21864 0.98394 0.99029 1.00757 1.22024 0.92636 0.99306 1.03399 1.20713 0.95057 0.88763 0.78520 0.93436 1.21035 0.89595 1.39024 1.06304 0.91309 1.24884 0.99264 0.94754 0.95032 1.69890 1.35389 1.37792 1.09461 0.86277 0.83854 0.78676 0.77363 1.20342 1.20964 1.19622 1.86522 1.33514 1.62341 1.44207 1.20927 0.81089 0.76868 0.87191 1.90769 1.55608 1.58764 1.35219 1.19433 0.96200 1.01769 0.93423 1.21525 0.99503 0.95864 0.91304 1.21014 0.95736 0.98957 0.98726 1.20450 0.95076 0.98515 0.96037 1.19278 0.96848 0.99814 0.93109 1.21191 0.94616 0.93973 0.97818 1.21107 0.94147 1.01129 0.98649 1.22645 0.89671 0.98793 0.90665 1.88066 1.28839 1.36846 1.75701 1.21498 0.90542 0.92762 0.92791 0.92795 0.94778 0.94979 0.87269 0.93944 0.92367 0.83860 0.85152 0.84498 0.89451 0.89508 0.92544 0.88206 0.87430 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.56 37.16 0.32 -2.86 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.91 2.25 -27.89 -0.06 5.85 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.56 8.90 -34.44 -0.31 -14.86 16 6 H 0.07 1.89 7.81 -52.48 -0.41 1.48 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 13 O -0.35 -8.36 9.07 -40.52 -0.37 -8.72 16 14 C 0.50 10.70 6.35 34.61 0.22 10.92 16 15 O -0.51 -12.10 13.53 -19.25 -0.26 -12.36 16 16 C -0.11 -1.84 5.87 -105.04 -0.62 -2.46 16 17 C -0.06 -0.94 9.62 -39.24 -0.38 -1.32 16 18 C -0.13 -1.48 9.65 -39.46 -0.38 -1.86 16 19 C -0.10 -1.16 5.81 -104.45 -0.61 -1.76 16 20 C -0.09 -1.12 5.77 -104.70 -0.60 -1.73 16 21 C -0.06 -0.86 9.22 -39.10 -0.36 -1.22 16 22 C -0.11 -1.07 6.00 -27.87 -0.17 -1.23 16 23 C 0.06 0.48 6.85 37.14 0.25 0.74 16 24 O -0.38 -3.87 10.80 -35.23 -0.38 -4.25 16 25 C 0.10 0.91 6.65 36.01 0.24 1.15 16 26 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 29 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 32 H 0.14 2.11 7.62 -52.48 -0.40 1.71 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.14 2.01 7.64 -52.49 -0.40 1.61 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 329.30 15.07 4.96 4.96 Total: -1.00 -31.10 329.30 -8.68 -39.78 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -5.55 Total: 1.58 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.69 Total: -12.56 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.01 Total: -25.33 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.10 -8.68 -39.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.055 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds