Wall clock time and date at job start Tue Mar 31 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.46878 * 2 1 4 4 H 1.09006 * 109.47470 * 305.00059 * 3 2 1 5 5 C 1.50697 * 109.47060 * 184.99956 * 3 2 1 6 6 H 1.08007 * 119.99862 * 240.00268 * 5 3 2 7 7 C 1.37878 * 120.00294 * 59.99659 * 5 3 2 8 8 N 1.31512 * 119.99541 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00158 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47127 * 90.00466 * 9 7 5 11 11 H 1.48502 * 109.46891 * 210.00345 * 9 7 5 12 12 H 1.48500 * 109.47136 * 330.00115 * 9 7 5 13 13 O 1.45203 * 109.47137 * 65.00075 * 3 2 1 14 14 C 1.34710 * 116.99971 * 269.99593 * 13 3 2 15 15 O 1.21473 * 120.00071 * 359.97438 * 14 13 3 16 16 C 1.47728 * 120.00180 * 180.02562 * 14 13 3 17 17 C 1.39647 * 120.22981 * 359.97435 * 16 14 13 18 18 C 1.37736 * 119.73629 * 180.10257 * 17 16 14 19 19 C 1.39059 * 120.46300 * 359.85368 * 18 17 16 20 20 C 1.37852 * 120.00526 * 0.15416 * 19 18 17 21 21 C 1.38322 * 120.08295 * 359.91257 * 20 19 18 22 22 C 1.50767 * 121.27712 * 180.11089 * 20 19 18 23 23 C 1.52966 * 109.77923 * 342.99157 * 22 20 19 24 24 O 1.43215 * 108.45232 * 49.21127 * 23 22 20 25 25 C 1.42707 * 113.11813 * 289.19779 * 24 23 22 26 26 H 1.09003 * 109.47037 * 60.00315 * 1 2 3 27 27 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47229 * 300.00202 * 1 2 3 29 29 H 1.08997 * 109.47170 * 240.00298 * 2 1 3 30 30 H 1.09000 * 109.46664 * 120.00034 * 2 1 3 31 31 H 0.97000 * 119.99842 * 179.97438 * 8 7 5 32 32 H 1.08005 * 120.13074 * 0.09195 * 17 16 14 33 33 H 1.08001 * 119.73715 * 180.02562 * 18 17 16 34 34 H 1.07999 * 119.90796 * 179.97438 * 21 20 19 35 35 H 1.08998 * 109.41990 * 222.89969 * 22 20 19 36 36 H 1.08997 * 109.42037 * 103.08494 * 22 20 19 37 37 H 1.09000 * 109.63793 * 289.51967 * 23 22 20 38 38 H 1.08998 * 109.81306 * 168.99915 * 23 22 20 39 39 H 1.09002 * 109.33743 * 172.08357 * 25 24 23 40 40 H 1.09003 * 109.33962 * 291.75720 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5418 1.4443 -0.1238 6 1 4.1471 1.8889 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4062 0.3374 -2.1732 9 14 6.0050 0.8801 -1.3810 10 1 6.5538 -0.3520 -0.7597 11 1 6.3835 0.9215 -2.8164 12 1 6.5575 2.0720 -0.6888 13 8 1.6558 2.0916 1.2407 14 6 0.4684 2.7277 1.2560 15 8 -0.2268 2.7401 0.2600 16 6 0.0123 3.4111 2.4837 17 6 0.8079 3.4003 3.6313 18 6 0.3717 4.0390 4.7711 19 6 -0.8535 4.6966 4.7857 20 6 -1.6423 4.7097 3.6553 21 6 -1.2161 4.0709 2.5048 22 6 -2.9743 5.4158 3.6384 23 6 -3.4379 5.6807 5.0719 24 8 -2.3569 6.2815 5.7942 25 6 -1.2879 5.3741 6.0599 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8293 -0.0604 -2.9501 32 1 1.7614 2.8931 3.6253 33 1 0.9872 4.0310 5.6585 34 1 -1.8365 4.0826 1.6210 35 1 -3.7089 4.7918 3.1295 36 1 -2.8756 6.3632 3.1086 37 1 -3.7175 4.7400 5.5462 38 1 -4.2935 6.3559 5.0647 39 1 -0.4459 5.9223 6.4825 40 1 -1.6227 4.6209 6.7732 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850979211.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:52 Heat of formation + Delta-G solvation = -138.126102 kcal Electronic energy + Delta-G solvation = -22864.682524 eV Core-core repulsion = 19415.129783 eV Total energy + Delta-G solvation = -3449.552741 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73054 -40.87154 -38.53512 -37.54684 -35.55160 -34.11549 -33.48646 -32.87086 -30.47788 -29.43070 -27.37710 -25.30600 -24.91668 -23.90246 -22.85497 -21.89054 -20.74776 -19.05048 -18.54921 -17.98969 -17.38205 -17.19482 -16.98872 -16.60844 -16.45925 -15.76935 -15.38150 -14.91843 -14.89442 -14.73434 -14.30487 -14.09644 -14.08790 -13.47792 -13.38295 -13.25297 -13.18342 -13.15761 -12.84983 -12.58155 -12.50670 -12.16430 -12.08671 -11.81524 -11.71631 -11.49756 -11.36477 -10.87108 -10.71004 -10.55365 -9.91026 -9.74804 -8.29625 -6.46881 -0.39011 0.26060 1.40404 1.42723 1.53025 1.54619 1.93978 2.39753 2.65014 2.94279 3.00017 3.55636 3.61000 3.79841 3.83246 4.00905 4.20399 4.27811 4.32414 4.34959 4.39505 4.44974 4.51199 4.57054 4.73697 4.77028 4.78927 4.83244 4.94789 5.02627 5.07043 5.16919 5.17855 5.29220 5.36103 5.40595 5.48433 5.62779 5.79378 5.92018 6.06811 6.13405 6.57267 6.91967 7.24327 8.77440 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029684 B = 0.003508 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.028976 B = 7978.749976 C = 8525.413114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.066 0.934 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.983 3.017 10 H -0.265 1.265 11 H -0.278 1.278 12 H -0.266 1.266 13 O -0.356 6.356 14 C 0.490 3.510 15 O -0.544 6.544 16 C -0.139 4.139 17 C -0.073 4.073 18 C -0.114 4.114 19 C -0.090 4.090 20 C -0.094 4.094 21 C -0.065 4.065 22 C -0.114 4.114 23 C 0.058 3.942 24 O -0.391 6.391 25 C 0.099 3.901 26 H 0.035 0.965 27 H 0.063 0.937 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.047 0.953 31 H 0.271 0.729 32 H 0.137 0.863 33 H 0.169 0.831 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.068 0.932 38 H 0.122 0.878 39 H 0.129 0.871 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.909 8.365 17.689 22.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.084 0.916 7 C -0.182 4.182 8 N -0.552 5.552 9 Si 0.806 3.194 10 H -0.190 1.190 11 H -0.203 1.203 12 H -0.191 1.191 13 O -0.272 6.272 14 C 0.337 3.663 15 O -0.436 6.436 16 C -0.140 4.140 17 C -0.092 4.092 18 C -0.132 4.132 19 C -0.091 4.091 20 C -0.094 4.094 21 C -0.083 4.083 22 C -0.151 4.151 23 C -0.018 4.018 24 O -0.310 6.310 25 C 0.023 3.977 26 H 0.054 0.946 27 H 0.082 0.918 28 H 0.051 0.949 29 H 0.107 0.893 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.155 0.845 33 H 0.187 0.813 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.140 0.860 39 H 0.147 0.853 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.068 8.440 17.256 22.170 hybrid contribution 0.920 -0.641 -1.308 1.723 sum -10.148 7.799 15.947 20.448 Atomic orbital electron populations 1.21711 0.96426 1.00640 0.99920 1.21871 0.94354 0.97997 1.02479 1.20428 0.94711 0.89301 0.78370 0.97672 1.21317 0.90300 1.40164 1.07072 0.91554 1.25821 1.04383 0.93787 0.94247 1.70013 1.37509 1.37832 1.09848 0.85184 0.77483 0.79153 0.77607 1.19047 1.20273 1.19059 1.86505 1.35115 1.62950 1.42673 1.21786 0.79852 0.76116 0.88556 1.90734 1.56104 1.59995 1.36812 1.19289 0.98154 1.04224 0.92377 1.21569 0.99177 0.96737 0.91680 1.21368 0.96052 0.97134 0.98635 1.20940 0.94329 0.96958 0.96836 1.19641 0.98282 0.99078 0.92379 1.21222 0.93817 0.94467 0.98814 1.21213 0.92779 1.00965 1.00185 1.22810 0.89742 0.99964 0.89287 1.88063 1.29407 1.37683 1.75843 1.21735 0.91188 0.93390 0.91411 0.94558 0.91771 0.94859 0.89311 0.93446 0.91963 0.84480 0.81321 0.85355 0.88277 0.89384 0.91399 0.86010 0.85343 0.88969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.93 8.56 71.98 0.62 -5.31 16 2 C -0.13 -6.68 5.49 30.59 0.17 -6.51 16 3 C 0.22 12.65 2.25 29.85 0.07 12.72 16 4 H 0.01 0.35 7.16 -2.38 -0.02 0.33 16 5 C -0.55 -31.83 8.90 25.60 0.23 -31.61 16 6 H 0.07 3.75 7.81 -2.91 -0.02 3.73 16 7 C 0.02 0.97 5.29 84.66 0.45 1.42 16 8 N -0.91 -52.89 11.29 21.45 0.24 -52.64 16 9 Si 0.98 43.22 29.54 68.60 2.03 45.24 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 11 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 12 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 13 O -0.36 -17.94 9.07 -56.20 -0.51 -18.45 16 14 C 0.49 22.45 6.35 70.33 0.45 22.90 16 15 O -0.54 -27.43 13.53 19.92 0.27 -27.16 16 16 C -0.14 -4.96 5.87 -20.14 -0.12 -5.07 16 17 C -0.07 -2.15 9.62 22.49 0.22 -1.93 16 18 C -0.11 -2.38 9.65 22.35 0.22 -2.16 16 19 C -0.09 -1.81 5.81 -19.75 -0.11 -1.92 16 20 C -0.09 -2.18 5.77 -19.91 -0.11 -2.30 16 21 C -0.06 -1.97 9.22 22.58 0.21 -1.76 16 22 C -0.11 -1.91 6.00 29.86 0.18 -1.73 16 23 C 0.06 0.75 6.85 71.97 0.49 1.24 16 24 O -0.39 -6.57 10.80 -148.98 -1.61 -8.18 16 25 C 0.10 1.36 6.65 71.24 0.47 1.83 16 26 H 0.04 1.75 7.79 -2.39 -0.02 1.73 16 27 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.03 1.48 6.06 -2.39 -0.01 1.46 16 29 H 0.09 4.97 5.95 -2.39 -0.01 4.96 16 30 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.14 4.09 7.62 -2.91 -0.02 4.07 16 33 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 34 H 0.13 3.98 7.64 -2.91 -0.02 3.96 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.07 0.74 8.07 -2.39 -0.02 0.72 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -70.69 329.30 4.87 -65.82 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: 1.04 Total: 15.57 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 3.41 Total: -20.20 kcal Atomic # 7 Polarization: -52.89 SS G_CDS: 0.24 Total: -52.64 kcal Atomic # 8 Polarization: -51.94 SS G_CDS: -1.85 Total: -53.79 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -70.69 4.87 -65.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979211.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.310 kcal (2) G-P(sol) polarization free energy of solvation -70.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds