Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46826 * 2 1 4 4 H 1.09003 * 109.47432 * 55.00092 * 3 2 1 5 5 C 1.50708 * 109.47075 * 174.99780 * 3 2 1 6 6 H 1.07999 * 119.99941 * 119.99724 * 5 3 2 7 7 C 1.37877 * 119.99905 * 300.00050 * 5 3 2 8 8 N 1.31510 * 120.00180 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99851 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46787 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47154 * 119.99665 * 9 7 5 12 12 H 1.48493 * 109.46903 * 239.99900 * 9 7 5 13 13 O 1.45199 * 109.47179 * 294.99827 * 3 2 1 14 14 C 1.34742 * 117.00019 * 90.00124 * 13 3 2 15 15 O 1.21499 * 119.99988 * 0.02562 * 14 13 3 16 16 C 1.47473 * 120.00092 * 180.02562 * 14 13 3 17 17 C 1.39812 * 120.26690 * 0.02562 * 16 14 13 18 18 C 1.37451 * 120.19406 * 179.76424 * 17 16 14 19 19 C 1.39598 * 120.43216 * 0.04396 * 18 17 16 20 20 C 1.39205 * 119.12085 * 0.35365 * 19 18 17 21 21 C 1.37283 * 120.93513 * 359.42491 * 20 19 18 22 22 C 1.51679 * 106.99970 * 179.00407 * 20 19 18 23 23 C 1.54694 * 101.91924 * 344.85338 * 22 20 19 24 24 H 1.09007 * 110.74327 * 266.96142 * 23 22 20 25 25 C 1.53003 * 110.90214 * 143.69487 * 23 22 20 26 26 O 1.35991 * 129.72370 * 180.93553 * 19 18 17 27 27 H 1.08991 * 109.47209 * 60.00425 * 1 2 3 28 28 H 1.09008 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47495 * 299.99703 * 1 2 3 30 30 H 1.08993 * 109.47715 * 239.99672 * 2 1 3 31 31 H 1.09004 * 109.47035 * 119.99475 * 2 1 3 32 32 H 0.96999 * 120.00458 * 180.02562 * 8 7 5 33 33 H 1.07995 * 119.90597 * 359.78162 * 17 16 14 34 34 H 1.08001 * 119.78633 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.07498 * 180.39070 * 21 20 19 36 36 H 1.09003 * 110.93943 * 103.00899 * 22 20 19 37 37 H 1.09005 * 110.94276 * 226.69184 * 22 20 19 38 38 H 1.08997 * 109.47221 * 305.06827 * 25 23 22 39 39 H 1.09003 * 109.46896 * 65.07100 * 25 23 22 40 40 H 1.09000 * 109.46820 * 185.06422 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3376 2.1734 9 14 6.0050 0.8802 1.3813 10 1 6.5987 1.5444 0.1932 11 1 6.3999 1.6159 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6558 2.0917 -1.2407 14 6 0.4681 2.7278 -1.2561 15 8 -0.2273 2.7402 -0.2599 16 6 0.0123 3.4091 -2.4820 17 6 0.8078 3.3979 -3.6317 18 6 0.3793 4.0292 -4.7750 19 6 -0.8514 4.6876 -4.8003 20 6 -1.6355 4.7025 -3.6501 21 6 -1.2194 4.0715 -2.5041 22 6 -2.8826 5.5029 -3.9739 23 6 -2.4708 6.2214 -5.2805 24 1 -2.0559 7.2062 -5.0653 25 6 -3.6578 6.3334 -6.2394 26 8 -1.4617 5.3504 -5.8189 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8292 -0.0602 2.9504 33 1 1.7616 2.8915 -3.6216 34 1 0.9990 4.0161 -5.6595 35 1 -1.8417 4.0865 -1.6215 36 1 -3.7348 4.8447 -4.1433 37 1 -3.0992 6.2230 -3.1848 38 1 -4.0765 5.3427 -6.4165 39 1 -4.4202 6.9768 -5.8001 40 1 -3.3224 6.7605 -7.1844 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850979749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -104.972154 kcal Electronic energy + Delta-G solvation = -22743.416508 eV Core-core repulsion = 19295.301430 eV Total energy + Delta-G solvation = -3448.115078 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.33876 -39.57180 -37.37777 -35.63775 -33.52188 -33.38676 -31.52691 -31.19396 -30.27257 -27.42108 -26.74933 -24.13823 -22.94795 -21.98809 -21.90472 -20.71283 -19.47218 -17.72416 -17.43559 -16.86459 -16.37812 -15.81436 -15.49667 -15.11992 -14.64883 -14.28428 -13.96423 -13.69617 -13.34213 -13.09874 -13.04809 -12.84196 -12.69864 -12.41877 -12.35710 -12.01231 -11.54880 -11.47149 -11.31279 -11.17077 -10.98975 -10.90256 -10.77134 -10.62826 -10.26567 -9.79495 -9.64104 -9.35565 -8.99499 -8.78513 -8.45418 -8.24010 -6.17818 -4.24669 0.88105 1.28796 2.89312 3.09029 3.24079 3.30888 3.35469 3.63122 3.93384 4.20003 4.26536 4.36837 4.60747 4.73091 4.85563 5.02009 5.14177 5.16854 5.28181 5.35609 5.37284 5.50527 5.60253 5.62937 5.71730 5.98899 6.19675 6.24099 6.26164 6.32732 6.44332 6.47126 6.50979 6.89718 6.98545 7.02565 7.18952 7.26544 7.62803 7.75167 7.95487 8.16669 8.64621 8.90262 9.40507 10.89072 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.003377 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.204013 B = 8288.983102 C = 8790.483285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.351 6.351 14 C 0.500 3.500 15 O -0.516 6.516 16 C -0.142 4.142 17 C -0.026 4.026 18 C -0.152 4.152 19 C 0.130 3.870 20 C -0.193 4.193 21 C -0.010 4.010 22 C -0.103 4.103 23 C 0.075 3.925 24 H 0.088 0.912 25 C -0.149 4.149 26 O -0.301 6.301 27 H 0.032 0.968 28 H 0.033 0.967 29 H 0.053 0.947 30 H 0.042 0.958 31 H 0.109 0.891 32 H 0.266 0.734 33 H 0.151 0.849 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.079 0.921 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.558 9.727 -14.199 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.267 6.267 14 C 0.345 3.655 15 O -0.407 6.407 16 C -0.143 4.143 17 C -0.044 4.044 18 C -0.171 4.171 19 C 0.084 3.916 20 C -0.194 4.194 21 C -0.028 4.028 22 C -0.140 4.140 23 C 0.019 3.981 24 H 0.106 0.894 25 C -0.206 4.206 26 O -0.215 6.215 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.127 0.873 32 H 0.076 0.924 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.086 0.914 39 H 0.098 0.902 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -11.672 9.603 -13.947 20.566 hybrid contribution 0.786 -0.080 0.425 0.897 sum -10.886 9.524 -13.521 19.800 Atomic orbital electron populations 1.21862 0.98385 0.99000 1.00791 1.22018 0.92648 0.99320 1.03368 1.20706 0.95026 0.88763 0.78569 0.93446 1.21079 0.89631 1.38830 1.06241 0.91246 1.24885 0.99225 0.94791 0.95082 1.69898 1.35286 1.37927 1.09455 0.86236 0.83932 0.77864 0.78215 1.19462 1.20785 1.20733 1.86521 1.33566 1.62446 1.44159 1.20729 0.81010 0.76745 0.87026 1.90772 1.55652 1.59028 1.35269 1.19260 0.96760 1.04491 0.93805 1.21322 0.99214 0.93689 0.90175 1.20229 0.93806 1.03093 0.99925 1.19847 0.92445 0.92598 0.86715 1.20579 0.97533 1.06132 0.95138 1.20335 0.93944 0.91811 0.96748 1.21841 0.96129 0.98597 0.97386 1.23426 0.88240 0.93476 0.92930 0.89414 1.21883 0.95925 1.03368 0.99443 1.86810 1.49611 1.54673 1.30384 0.94901 0.94829 0.92819 0.93937 0.87331 0.92450 0.83109 0.84753 0.84378 0.88999 0.88900 0.91371 0.90219 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.19 8.56 37.16 0.32 -2.87 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.90 2.25 -27.88 -0.06 5.84 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.48 8.90 -34.44 -0.31 -14.79 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.04 11.29 55.43 0.63 -24.41 16 9 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 13 O -0.35 -8.34 9.06 -40.61 -0.37 -8.71 16 14 C 0.50 10.77 6.34 34.49 0.22 10.99 16 15 O -0.52 -12.13 13.54 -19.27 -0.26 -12.40 16 16 C -0.14 -2.44 5.88 -104.94 -0.62 -3.06 16 17 C -0.03 -0.39 9.59 -39.28 -0.38 -0.76 16 18 C -0.15 -1.98 10.05 -39.36 -0.40 -2.38 16 19 C 0.13 1.70 7.04 -38.72 -0.27 1.43 16 20 C -0.19 -2.47 6.26 -104.13 -0.65 -3.13 16 21 C -0.01 -0.15 9.58 -39.32 -0.38 -0.53 16 22 C -0.10 -0.93 6.65 -26.51 -0.18 -1.11 16 23 C 0.08 0.64 4.24 -25.84 -0.11 0.53 16 24 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 25 C -0.15 -0.90 9.61 37.16 0.36 -0.54 16 26 O -0.30 -3.58 10.80 -19.71 -0.21 -3.80 16 27 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 28 H 0.03 0.65 8.14 -51.92 -0.42 0.23 16 29 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 30 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.93 5.95 -51.93 -0.31 2.62 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 33 H 0.15 2.19 7.61 -52.49 -0.40 1.79 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.14 2.01 7.66 -52.49 -0.40 1.61 16 36 H 0.09 0.74 7.91 -51.93 -0.41 0.33 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 LS Contribution 332.58 15.07 5.01 5.01 Total: -1.00 -30.86 332.58 -8.45 -39.32 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.54 Total: 1.31 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.69 Total: -12.29 kcal Atomic # 7 Polarization: -25.04 SS G_CDS: 0.63 Total: -24.41 kcal Atomic # 8 Polarization: -24.06 SS G_CDS: -0.84 Total: -24.90 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.86 -8.45 -39.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.653 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds