Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46826 * 2 1 4 4 H 1.09003 * 109.47432 * 55.00092 * 3 2 1 5 5 C 1.50708 * 109.47075 * 174.99780 * 3 2 1 6 6 H 1.07999 * 119.99941 * 119.99724 * 5 3 2 7 7 C 1.37877 * 119.99905 * 300.00050 * 5 3 2 8 8 N 1.31510 * 120.00180 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99851 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.46787 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47154 * 119.99665 * 9 7 5 12 12 H 1.48493 * 109.46903 * 239.99900 * 9 7 5 13 13 O 1.45199 * 109.47179 * 294.99827 * 3 2 1 14 14 C 1.34742 * 117.00019 * 90.00124 * 13 3 2 15 15 O 1.21499 * 119.99988 * 0.02562 * 14 13 3 16 16 C 1.47473 * 120.00092 * 180.02562 * 14 13 3 17 17 C 1.39812 * 120.26690 * 0.02562 * 16 14 13 18 18 C 1.37451 * 120.19406 * 179.76424 * 17 16 14 19 19 C 1.39598 * 120.43216 * 0.04396 * 18 17 16 20 20 C 1.39205 * 119.12085 * 0.35365 * 19 18 17 21 21 C 1.37283 * 120.93513 * 359.42491 * 20 19 18 22 22 C 1.51679 * 106.99970 * 179.00407 * 20 19 18 23 23 C 1.54694 * 101.91924 * 344.85338 * 22 20 19 24 24 H 1.09007 * 110.74327 * 266.96142 * 23 22 20 25 25 C 1.53003 * 110.90214 * 143.69487 * 23 22 20 26 26 O 1.35991 * 129.72370 * 180.93553 * 19 18 17 27 27 H 1.08991 * 109.47209 * 60.00425 * 1 2 3 28 28 H 1.09008 * 109.46791 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47495 * 299.99703 * 1 2 3 30 30 H 1.08993 * 109.47715 * 239.99672 * 2 1 3 31 31 H 1.09004 * 109.47035 * 119.99475 * 2 1 3 32 32 H 0.96999 * 120.00458 * 180.02562 * 8 7 5 33 33 H 1.07995 * 119.90597 * 359.78162 * 17 16 14 34 34 H 1.08001 * 119.78633 * 180.02562 * 18 17 16 35 35 H 1.08001 * 120.07498 * 180.39070 * 21 20 19 36 36 H 1.09003 * 110.93943 * 103.00899 * 22 20 19 37 37 H 1.09005 * 110.94276 * 226.69184 * 22 20 19 38 38 H 1.08997 * 109.47221 * 305.06827 * 25 23 22 39 39 H 1.09003 * 109.46896 * 65.07100 * 25 23 22 40 40 H 1.09000 * 109.46820 * 185.06422 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8889 -0.6522 7 6 4.1432 0.8785 1.2281 8 7 3.4062 0.3376 2.1734 9 14 6.0050 0.8802 1.3813 10 1 6.5987 1.5444 0.1932 11 1 6.3999 1.6159 2.6092 12 1 6.4961 -0.5188 1.4628 13 8 1.6558 2.0917 -1.2407 14 6 0.4681 2.7278 -1.2561 15 8 -0.2273 2.7402 -0.2599 16 6 0.0123 3.4091 -2.4820 17 6 0.8078 3.3979 -3.6317 18 6 0.3793 4.0292 -4.7750 19 6 -0.8514 4.6876 -4.8003 20 6 -1.6355 4.7025 -3.6501 21 6 -1.2194 4.0715 -2.5041 22 6 -2.8826 5.5029 -3.9739 23 6 -2.4708 6.2214 -5.2805 24 1 -2.0559 7.2062 -5.0653 25 6 -3.6578 6.3334 -6.2394 26 8 -1.4617 5.3504 -5.8189 27 1 -0.3633 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.8292 -0.0602 2.9504 33 1 1.7616 2.8915 -3.6216 34 1 0.9990 4.0161 -5.6595 35 1 -1.8417 4.0865 -1.6215 36 1 -3.7348 4.8447 -4.1433 37 1 -3.0992 6.2230 -3.1848 38 1 -4.0765 5.3427 -6.4165 39 1 -4.4202 6.9768 -5.8001 40 1 -3.3224 6.7605 -7.1844 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850979749.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -121.277659 kcal Electronic energy + Delta-G solvation = -22744.123568 eV Core-core repulsion = 19295.301430 eV Total energy + Delta-G solvation = -3448.822138 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31518 -41.26461 -38.59896 -37.44228 -35.50070 -34.23460 -33.39506 -32.23114 -31.44167 -29.34584 -27.67944 -25.70509 -24.71924 -22.97027 -22.69024 -22.39501 -21.26841 -19.11217 -18.67861 -18.49042 -17.60576 -17.52456 -17.07320 -16.51566 -16.33145 -15.34150 -15.26116 -14.80083 -14.72923 -14.54658 -14.20212 -13.96969 -13.90852 -13.54065 -13.37687 -13.33463 -13.24950 -13.10187 -12.94238 -12.81964 -12.55857 -12.23069 -12.12788 -11.87839 -11.77104 -11.71958 -11.48249 -11.32854 -10.82164 -10.53297 -10.07519 -9.32658 -8.27251 -6.43892 -0.35814 0.20506 1.42157 1.42763 1.55121 1.56775 1.95074 2.14514 2.42196 2.64986 3.02481 3.35566 3.51346 3.73003 3.84441 4.01046 4.08307 4.21020 4.23937 4.36391 4.38925 4.45902 4.53376 4.65939 4.74640 4.81171 4.83400 4.90264 5.02339 5.07353 5.08308 5.16471 5.20970 5.25771 5.27343 5.38546 5.42721 5.51720 5.66527 5.96058 6.04020 6.10999 6.60960 6.97564 7.27417 8.79990 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031517 B = 0.003377 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.204013 B = 8288.983102 C = 8790.483285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.548 4.548 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.915 5.915 9 Si 0.982 3.018 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.271 1.271 13 O -0.357 6.357 14 C 0.496 3.504 15 O -0.545 6.545 16 C -0.171 4.171 17 C -0.027 4.027 18 C -0.148 4.148 19 C 0.136 3.864 20 C -0.192 4.192 21 C -0.013 4.013 22 C -0.100 4.100 23 C 0.069 3.931 24 H 0.102 0.898 25 C -0.145 4.145 26 O -0.308 6.308 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.047 0.953 31 H 0.088 0.912 32 H 0.270 0.730 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.112 0.888 38 H 0.064 0.936 39 H 0.103 0.897 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 10.802 -16.264 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.585 4.585 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.805 3.195 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.344 3.656 15 O -0.438 6.438 16 C -0.172 4.172 17 C -0.045 4.045 18 C -0.167 4.167 19 C 0.089 3.911 20 C -0.193 4.193 21 C -0.032 4.032 22 C -0.137 4.137 23 C 0.014 3.986 24 H 0.120 0.880 25 C -0.202 4.202 26 O -0.222 6.222 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.083 0.917 39 H 0.122 0.878 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.213 10.691 -16.034 22.816 hybrid contribution 0.820 -0.300 0.968 1.303 sum -11.393 10.391 -15.066 21.559 Atomic orbital electron populations 1.21711 0.96416 1.00579 1.00000 1.21867 0.94365 0.98062 1.02420 1.20417 0.94650 0.89274 0.78448 0.97549 1.21351 0.90352 1.39883 1.06943 0.91518 1.25809 1.04269 0.93878 0.94342 1.70018 1.37386 1.38004 1.09862 0.85152 0.77663 0.78322 0.78375 1.18735 1.20209 1.19647 1.86504 1.35155 1.63042 1.42618 1.21503 0.79805 0.76033 0.88291 1.90741 1.56113 1.60211 1.36769 1.19087 0.98648 1.06800 0.92677 1.21308 0.98968 0.94025 0.90176 1.20410 0.94263 1.02110 0.99900 1.20048 0.92264 0.91716 0.87037 1.20908 0.99080 1.05316 0.94004 1.20322 0.93158 0.92031 0.97663 1.22007 0.94681 0.98777 0.98249 1.23792 0.88359 0.93299 0.93134 0.87990 1.21919 0.95293 1.03807 0.99185 1.86826 1.50183 1.54816 1.30342 0.94742 0.91916 0.94509 0.93472 0.89414 0.92023 0.83288 0.82183 0.84660 0.87645 0.86935 0.91711 0.87801 0.90858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.56 71.98 0.62 -5.29 16 2 C -0.13 -6.66 5.49 30.59 0.17 -6.49 16 3 C 0.23 12.57 2.25 29.85 0.07 12.63 16 4 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 5 C -0.55 -31.46 8.90 25.60 0.23 -31.24 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.93 5.29 84.66 0.45 1.38 16 8 N -0.91 -52.81 11.29 21.45 0.24 -52.57 16 9 Si 0.98 43.21 29.54 68.60 2.03 45.24 16 10 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 13 O -0.36 -17.76 9.06 -56.52 -0.51 -18.28 16 14 C 0.50 22.39 6.34 70.26 0.45 22.84 16 15 O -0.55 -27.06 13.54 19.84 0.27 -26.79 16 16 C -0.17 -6.02 5.88 -20.07 -0.12 -6.14 16 17 C -0.03 -0.79 9.59 22.46 0.22 -0.58 16 18 C -0.15 -3.63 10.05 22.41 0.23 -3.40 16 19 C 0.14 3.27 7.04 22.83 0.16 3.43 16 20 C -0.19 -4.60 6.26 -19.54 -0.12 -4.72 16 21 C -0.01 -0.40 9.58 22.44 0.21 -0.19 16 22 C -0.10 -1.51 6.65 30.74 0.20 -1.31 16 23 C 0.07 0.94 4.24 31.17 0.13 1.08 16 24 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 25 C -0.15 -1.22 9.61 71.98 0.69 -0.53 16 26 O -0.31 -6.43 10.80 -93.45 -1.01 -7.44 16 27 H 0.03 1.52 6.06 -2.39 -0.01 1.51 16 28 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 29 H 0.04 1.76 7.79 -2.39 -0.02 1.74 16 30 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 4.91 5.95 -2.38 -0.01 4.89 16 32 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.15 4.41 7.61 -2.91 -0.02 4.38 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.14 4.03 7.66 -2.91 -0.02 4.01 16 36 H 0.11 1.35 7.91 -2.39 -0.02 1.34 16 37 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 38 H 0.06 0.61 8.12 -2.39 -0.02 0.59 16 39 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -68.95 332.58 5.63 -63.32 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: 1.04 Total: 15.05 kcal Atomic # 6 Polarization: -22.10 SS G_CDS: 3.58 Total: -18.53 kcal Atomic # 7 Polarization: -52.81 SS G_CDS: 0.24 Total: -52.57 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -1.25 Total: -52.51 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -68.95 5.63 -63.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979749.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.962 kcal (2) G-P(sol) polarization free energy of solvation -68.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds