Wall clock time and date at job start Tue Mar 31 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08997 * 109.46624 * 55.00196 * 3 2 1 5 5 C 1.50700 * 109.46986 * 175.00138 * 3 2 1 6 6 H 1.07999 * 119.99988 * 120.00054 * 5 3 2 7 7 C 1.37885 * 120.00047 * 300.00234 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47021 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47081 * 119.99727 * 9 7 5 12 12 H 1.48501 * 109.47213 * 240.00099 * 9 7 5 13 13 O 1.45190 * 109.47030 * 295.00199 * 3 2 1 14 14 C 1.34750 * 117.00336 * 90.00169 * 13 3 2 15 15 O 1.21510 * 119.99649 * 359.97438 * 14 13 3 16 16 C 1.47464 * 120.00414 * 179.97438 * 14 13 3 17 17 C 1.39817 * 120.27240 * 0.02562 * 16 14 13 18 18 C 1.37435 * 120.19821 * 179.86866 * 17 16 14 19 19 C 1.39611 * 120.43875 * 0.06968 * 18 17 16 20 20 C 1.39203 * 119.10719 * 0.15968 * 19 18 17 21 21 C 1.37282 * 120.94365 * 359.37754 * 20 19 18 22 22 C 1.51687 * 106.99142 * 179.44198 * 20 19 18 23 23 C 1.54696 * 101.89071 * 344.48092 * 22 20 19 24 24 H 1.09005 * 110.74183 * 143.71502 * 23 22 20 25 25 C 1.53007 * 110.74047 * 267.04262 * 23 22 20 26 26 O 1.35985 * 129.71459 * 180.59675 * 19 18 17 27 27 H 1.08999 * 109.46636 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46667 * 299.99427 * 1 2 3 29 29 H 1.08996 * 109.47218 * 59.99859 * 1 2 3 30 30 H 1.09005 * 109.47249 * 240.00079 * 2 1 3 31 31 H 1.08996 * 109.47228 * 120.00698 * 2 1 3 32 32 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 33 33 H 1.08001 * 119.89763 * 359.84821 * 17 16 14 34 34 H 1.07999 * 119.78157 * 180.02562 * 18 17 16 35 35 H 1.07998 * 120.07544 * 180.58575 * 21 20 19 36 36 H 1.08996 * 110.94104 * 226.32716 * 22 20 19 37 37 H 1.08999 * 110.93915 * 102.62904 * 22 20 19 38 38 H 1.08998 * 109.46809 * 174.85894 * 25 23 22 39 39 H 1.09000 * 109.46753 * 294.86042 * 25 23 22 40 40 H 1.09000 * 109.47019 * 54.85807 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4061 0.3417 2.1757 9 14 6.0050 0.8811 1.3817 10 1 6.5988 1.5462 0.1941 11 1 6.3991 1.6166 2.6102 12 1 6.4971 -0.5176 1.4628 13 8 1.6559 2.0916 -1.2406 14 6 0.4682 2.7279 -1.2559 15 8 -0.2277 2.7395 -0.2599 16 6 0.0128 3.4101 -2.4814 17 6 0.8087 3.3999 -3.6310 18 6 0.3816 4.0339 -4.7731 19 6 -0.8480 4.6947 -4.7976 20 6 -1.6339 4.7056 -3.6487 21 6 -1.2214 4.0676 -2.5052 22 6 -2.8840 5.5005 -3.9743 23 6 -2.4691 6.2286 -5.2747 24 1 -3.3134 6.3063 -5.9598 25 6 -1.8944 7.6116 -4.9615 26 8 -1.4538 5.3655 -5.8136 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0567 2.9522 33 1 1.7620 2.8925 -3.6212 34 1 1.0016 4.0214 -5.6573 35 1 -1.8466 4.0770 -1.6247 36 1 -3.1088 6.2149 -3.1824 37 1 -3.7315 4.8384 -4.1519 38 1 -1.5257 8.0682 -5.8800 39 1 -2.6740 8.2399 -4.5308 40 1 -1.0742 7.5118 -4.2507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850979751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:46 Heat of formation + Delta-G solvation = -104.851703 kcal Electronic energy + Delta-G solvation = -22861.310133 eV Core-core repulsion = 19413.200278 eV Total energy + Delta-G solvation = -3448.109855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.40737 -39.57407 -37.36622 -35.63336 -33.52045 -33.34188 -31.44026 -31.01128 -30.29295 -27.42478 -26.90836 -24.24678 -22.96644 -22.09771 -21.78322 -20.70208 -19.46603 -17.55762 -17.26543 -16.77329 -16.36247 -15.79181 -15.75817 -15.19845 -14.63354 -14.30332 -14.03232 -13.74948 -13.24291 -13.16273 -12.86653 -12.74771 -12.65529 -12.51023 -12.32119 -12.01360 -11.51461 -11.45801 -11.30833 -11.17470 -10.99436 -10.90482 -10.80580 -10.62809 -10.26508 -9.79470 -9.64054 -9.35627 -8.98863 -8.78485 -8.45392 -8.23654 -6.17900 -4.24657 0.88396 1.29248 2.90677 3.12255 3.24074 3.30918 3.35503 3.64064 3.94131 4.16091 4.31277 4.41128 4.56551 4.73746 4.85614 5.02303 5.14191 5.20177 5.31968 5.34462 5.44406 5.50621 5.60940 5.61891 5.79740 5.99194 6.20007 6.24559 6.26200 6.32734 6.44533 6.47091 6.51064 6.89708 6.98577 7.02740 7.18911 7.26497 7.62842 7.75108 7.95386 8.16629 8.64660 8.90310 9.40472 10.89030 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.003523 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.914772 B = 7946.297611 C = 8423.394873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.222 3.778 4 H 0.048 0.952 5 C -0.520 4.520 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.351 6.351 14 C 0.500 3.500 15 O -0.516 6.516 16 C -0.142 4.142 17 C -0.026 4.026 18 C -0.152 4.152 19 C 0.130 3.870 20 C -0.192 4.192 21 C -0.010 4.010 22 C -0.103 4.103 23 C 0.076 3.924 24 H 0.116 0.884 25 C -0.173 4.173 26 O -0.299 6.299 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.108 0.892 32 H 0.265 0.735 33 H 0.151 0.849 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 10.149 -13.741 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.169 3.831 4 H 0.066 0.934 5 C -0.558 4.558 6 H 0.088 0.912 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.207 1.207 13 O -0.267 6.267 14 C 0.345 3.655 15 O -0.407 6.407 16 C -0.143 4.143 17 C -0.044 4.044 18 C -0.171 4.171 19 C 0.084 3.916 20 C -0.192 4.192 21 C -0.029 4.029 22 C -0.140 4.140 23 C 0.020 3.980 24 H 0.134 0.866 25 C -0.230 4.230 26 O -0.213 6.213 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.075 0.925 33 H 0.169 0.831 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.021 10.033 -13.481 20.096 hybrid contribution 0.748 -0.085 0.408 0.856 sum -10.273 9.949 -13.073 19.376 Atomic orbital electron populations 1.21861 0.98378 0.98997 1.00796 1.22019 0.92656 0.99327 1.03349 1.20700 0.95022 0.88760 0.78578 0.93441 1.21082 0.89639 1.38838 1.06262 0.91242 1.24889 0.99228 0.94805 0.95058 1.69907 1.35265 1.38022 1.09351 0.86236 0.83924 0.77867 0.78213 1.19468 1.20780 1.20732 1.86521 1.33579 1.62443 1.44149 1.20735 0.81010 0.76741 0.87032 1.90775 1.55632 1.59048 1.35276 1.19254 0.96712 1.04561 0.93800 1.21318 0.99222 0.93715 0.90182 1.20229 0.93826 1.03129 0.99922 1.19866 0.92459 0.92493 0.86791 1.20560 0.97527 1.05987 0.95166 1.20329 0.93968 0.91812 0.96755 1.21839 0.96018 0.98546 0.97597 1.23455 0.89593 0.90009 0.94924 0.86621 1.22259 1.02376 0.95434 1.02910 1.86839 1.49721 1.54290 1.30400 0.94831 0.92811 0.94902 0.93937 0.87359 0.92457 0.83141 0.84790 0.84406 0.88805 0.89042 0.91291 0.90572 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.56 37.16 0.32 -2.87 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.90 2.25 -27.88 -0.06 5.84 16 4 H 0.05 1.40 7.16 -51.93 -0.37 1.03 16 5 C -0.52 -14.49 8.90 -34.44 -0.31 -14.80 16 6 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.02 11.31 55.43 0.63 -24.39 16 9 Si 0.91 20.97 29.54 -169.99 -5.02 15.95 16 10 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 O -0.35 -8.34 9.06 -40.63 -0.37 -8.71 16 14 C 0.50 10.76 6.34 34.49 0.22 10.97 16 15 O -0.52 -12.12 13.54 -19.27 -0.26 -12.38 16 16 C -0.14 -2.44 5.88 -104.94 -0.62 -3.05 16 17 C -0.03 -0.39 9.59 -39.28 -0.38 -0.77 16 18 C -0.15 -1.98 10.04 -39.36 -0.40 -2.37 16 19 C 0.13 1.68 6.95 -38.71 -0.27 1.41 16 20 C -0.19 -2.43 6.25 -104.13 -0.65 -3.08 16 21 C -0.01 -0.15 9.58 -39.32 -0.38 -0.53 16 22 C -0.10 -0.91 6.65 -26.50 -0.18 -1.09 16 23 C 0.08 0.63 4.31 -25.84 -0.11 0.52 16 24 H 0.12 0.67 8.14 -51.93 -0.42 0.25 16 25 C -0.17 -1.25 9.49 37.16 0.35 -0.90 16 26 O -0.30 -3.50 10.81 -19.69 -0.21 -3.71 16 27 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 1.25 7.79 -51.93 -0.40 0.84 16 29 H 0.03 0.71 6.06 -51.93 -0.31 0.39 16 30 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.11 2.92 5.96 -51.93 -0.31 2.61 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.15 2.19 7.61 -52.49 -0.40 1.79 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.14 2.00 7.66 -52.49 -0.40 1.60 16 36 H 0.09 0.70 7.92 -51.93 -0.41 0.29 16 37 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.58 8.12 -51.93 -0.42 0.16 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -30.83 332.47 -8.46 -39.29 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.54 Total: 1.57 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: -2.69 Total: -12.63 kcal Atomic # 7 Polarization: -25.02 SS G_CDS: 0.63 Total: -24.39 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.84 Total: -24.80 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.83 -8.46 -39.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.560 kcal (2) G-P(sol) polarization free energy of solvation -30.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds