Wall clock time and date at job start Tue Mar 31 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47080 * 2 1 4 4 H 1.08997 * 109.46624 * 55.00196 * 3 2 1 5 5 C 1.50700 * 109.46986 * 175.00138 * 3 2 1 6 6 H 1.07999 * 119.99988 * 120.00054 * 5 3 2 7 7 C 1.37885 * 120.00047 * 300.00234 * 5 3 2 8 8 N 1.31518 * 119.99792 * 359.72305 * 7 5 3 9 9 Si 1.86795 * 120.00009 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47021 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47081 * 119.99727 * 9 7 5 12 12 H 1.48501 * 109.47213 * 240.00099 * 9 7 5 13 13 O 1.45190 * 109.47030 * 295.00199 * 3 2 1 14 14 C 1.34750 * 117.00336 * 90.00169 * 13 3 2 15 15 O 1.21510 * 119.99649 * 359.97438 * 14 13 3 16 16 C 1.47464 * 120.00414 * 179.97438 * 14 13 3 17 17 C 1.39817 * 120.27240 * 0.02562 * 16 14 13 18 18 C 1.37435 * 120.19821 * 179.86866 * 17 16 14 19 19 C 1.39611 * 120.43875 * 0.06968 * 18 17 16 20 20 C 1.39203 * 119.10719 * 0.15968 * 19 18 17 21 21 C 1.37282 * 120.94365 * 359.37754 * 20 19 18 22 22 C 1.51687 * 106.99142 * 179.44198 * 20 19 18 23 23 C 1.54696 * 101.89071 * 344.48092 * 22 20 19 24 24 H 1.09005 * 110.74183 * 143.71502 * 23 22 20 25 25 C 1.53007 * 110.74047 * 267.04262 * 23 22 20 26 26 O 1.35985 * 129.71459 * 180.59675 * 19 18 17 27 27 H 1.08999 * 109.46636 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46667 * 299.99427 * 1 2 3 29 29 H 1.08996 * 109.47218 * 59.99859 * 1 2 3 30 30 H 1.09005 * 109.47249 * 240.00079 * 2 1 3 31 31 H 1.08996 * 109.47228 * 120.00698 * 2 1 3 32 32 H 0.97000 * 119.99468 * 179.97438 * 8 7 5 33 33 H 1.08001 * 119.89763 * 359.84821 * 17 16 14 34 34 H 1.07999 * 119.78157 * 180.02562 * 18 17 16 35 35 H 1.07998 * 120.07544 * 180.58575 * 21 20 19 36 36 H 1.08996 * 110.94104 * 226.32716 * 22 20 19 37 37 H 1.08999 * 110.93915 * 102.62904 * 22 20 19 38 38 H 1.08998 * 109.46809 * 174.85894 * 25 23 22 39 39 H 1.09000 * 109.46753 * 294.86042 * 25 23 22 40 40 H 1.09000 * 109.47019 * 54.85807 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2280 8 7 3.4061 0.3417 2.1757 9 14 6.0050 0.8811 1.3817 10 1 6.5988 1.5462 0.1941 11 1 6.3991 1.6166 2.6102 12 1 6.4971 -0.5176 1.4628 13 8 1.6559 2.0916 -1.2406 14 6 0.4682 2.7279 -1.2559 15 8 -0.2277 2.7395 -0.2599 16 6 0.0128 3.4101 -2.4814 17 6 0.8087 3.3999 -3.6310 18 6 0.3816 4.0339 -4.7731 19 6 -0.8480 4.6947 -4.7976 20 6 -1.6339 4.7056 -3.6487 21 6 -1.2214 4.0676 -2.5052 22 6 -2.8840 5.5005 -3.9743 23 6 -2.4691 6.2286 -5.2747 24 1 -3.3134 6.3063 -5.9598 25 6 -1.8944 7.6116 -4.9615 26 8 -1.4538 5.3655 -5.8136 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8292 -0.0567 2.9522 33 1 1.7620 2.8925 -3.6212 34 1 1.0016 4.0214 -5.6573 35 1 -1.8466 4.0770 -1.6247 36 1 -3.1088 6.2149 -3.1824 37 1 -3.7315 4.8384 -4.1519 38 1 -1.5257 8.0682 -5.8800 39 1 -2.6740 8.2399 -4.5308 40 1 -1.0742 7.5118 -4.2507 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850979751.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:45 Heat of formation + Delta-G solvation = -121.202285 kcal Electronic energy + Delta-G solvation = -22862.019148 eV Core-core repulsion = 19413.200278 eV Total energy + Delta-G solvation = -3448.818870 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.36386 -41.26900 -38.58767 -37.43552 -35.49856 -34.20564 -33.38882 -31.98316 -31.46207 -29.33565 -27.82857 -25.79187 -24.75760 -23.12051 -22.58052 -22.37947 -21.25884 -19.11876 -18.58296 -18.25016 -17.63150 -17.29723 -16.98688 -16.81732 -16.47837 -15.28681 -15.23488 -14.81648 -14.77296 -14.56855 -14.25559 -14.07824 -13.77461 -13.53808 -13.35955 -13.28433 -13.21722 -13.11285 -12.98208 -12.82370 -12.55672 -12.16604 -12.12124 -11.86578 -11.81254 -11.76075 -11.48462 -11.32826 -10.82095 -10.53312 -10.06151 -9.31316 -8.27343 -6.43941 -0.34897 0.21593 1.42186 1.42772 1.55459 1.56868 1.95870 2.18768 2.42369 2.66548 3.02441 3.37519 3.53352 3.76533 3.84829 3.95216 4.08802 4.22285 4.28665 4.36279 4.38821 4.43857 4.53065 4.65509 4.77702 4.78807 4.82050 4.90742 5.01923 5.07329 5.08308 5.17730 5.20956 5.25220 5.27959 5.38627 5.41605 5.51735 5.66445 5.95939 6.04893 6.11071 6.60922 6.97739 7.27372 8.79938 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.003523 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.914772 B = 7946.297611 C = 8423.394873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.129 4.129 3 C 0.225 3.775 4 H 0.007 0.993 5 C -0.549 4.549 6 H 0.067 0.933 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.982 3.018 10 H -0.264 1.264 11 H -0.276 1.276 12 H -0.271 1.271 13 O -0.357 6.357 14 C 0.496 3.504 15 O -0.545 6.545 16 C -0.171 4.171 17 C -0.027 4.027 18 C -0.150 4.150 19 C 0.137 3.863 20 C -0.190 4.190 21 C -0.014 4.014 22 C -0.101 4.101 23 C 0.072 3.928 24 H 0.149 0.851 25 C -0.172 4.172 26 O -0.305 6.305 27 H 0.062 0.938 28 H 0.036 0.964 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.270 0.730 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.135 0.865 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.073 0.927 39 H 0.099 0.901 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.550 11.228 -15.903 22.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.025 0.975 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.805 3.195 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.344 3.656 15 O -0.439 6.439 16 C -0.173 4.173 17 C -0.046 4.046 18 C -0.168 4.168 19 C 0.090 3.910 20 C -0.191 4.191 21 C -0.032 4.032 22 C -0.138 4.138 23 C 0.017 3.983 24 H 0.167 0.833 25 C -0.229 4.229 26 O -0.219 6.219 27 H 0.081 0.919 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.166 0.834 34 H 0.177 0.823 35 H 0.153 0.847 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.092 0.908 39 H 0.118 0.882 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.678 11.126 -15.665 22.484 hybrid contribution 0.815 -0.298 0.980 1.309 sum -10.863 10.828 -14.685 21.234 Atomic orbital electron populations 1.21709 0.96404 1.00578 1.00002 1.21868 0.94378 0.98064 1.02403 1.20411 0.94643 0.89275 0.78458 0.97549 1.21358 0.90369 1.39919 1.06976 0.91521 1.25811 1.04275 0.93879 0.94306 1.70027 1.37369 1.38086 1.09756 0.85151 0.77647 0.78336 0.78364 1.18761 1.20200 1.19621 1.86503 1.35178 1.63044 1.42608 1.21515 0.79800 0.76027 0.88306 1.90743 1.56096 1.60239 1.36778 1.19080 0.98618 1.06904 0.92663 1.21297 0.98965 0.94092 0.90212 1.20407 0.94338 1.02218 0.99875 1.20057 0.92219 0.91560 0.87133 1.20899 0.99150 1.05091 0.93992 1.20316 0.93161 0.92076 0.97687 1.22018 0.94615 0.98733 0.98446 1.23847 0.89627 0.89583 0.95208 0.83319 1.22287 1.02462 0.95330 1.02795 1.86852 1.50268 1.54428 1.30306 0.91911 0.94506 0.94745 0.93474 0.89434 0.92027 0.83388 0.82278 0.84734 0.87097 0.87342 0.90754 0.88191 0.93674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.56 71.98 0.62 -5.29 16 2 C -0.13 -6.67 5.49 30.60 0.17 -6.50 16 3 C 0.23 12.59 2.25 29.85 0.07 12.65 16 4 H 0.01 0.42 7.16 -2.39 -0.02 0.40 16 5 C -0.55 -31.57 8.90 25.60 0.23 -31.34 16 6 H 0.07 3.76 7.81 -2.91 -0.02 3.74 16 7 C 0.02 0.95 5.29 84.66 0.45 1.39 16 8 N -0.91 -52.80 11.31 21.45 0.24 -52.56 16 9 Si 0.98 43.23 29.54 68.60 2.03 45.26 16 10 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 13 O -0.36 -17.81 9.06 -56.60 -0.51 -18.32 16 14 C 0.50 22.43 6.34 70.25 0.45 22.87 16 15 O -0.55 -27.11 13.54 19.80 0.27 -26.84 16 16 C -0.17 -6.04 5.88 -20.07 -0.12 -6.16 16 17 C -0.03 -0.82 9.59 22.46 0.22 -0.61 16 18 C -0.15 -3.67 10.04 22.41 0.23 -3.44 16 19 C 0.14 3.25 6.95 22.83 0.16 3.41 16 20 C -0.19 -4.50 6.25 -19.54 -0.12 -4.62 16 21 C -0.01 -0.42 9.58 22.44 0.21 -0.21 16 22 C -0.10 -1.47 6.65 30.74 0.20 -1.26 16 23 C 0.07 0.92 4.31 31.17 0.13 1.05 16 24 H 0.15 0.98 8.14 -2.38 -0.02 0.96 16 25 C -0.17 -1.93 9.49 71.98 0.68 -1.24 16 26 O -0.30 -6.17 10.81 -93.38 -1.01 -7.18 16 27 H 0.06 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.04 1.76 7.79 -2.39 -0.02 1.75 16 29 H 0.03 1.52 6.06 -2.39 -0.01 1.51 16 30 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 31 H 0.09 4.90 5.96 -2.39 -0.01 4.88 16 32 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 33 H 0.15 4.41 7.61 -2.91 -0.02 4.39 16 34 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 35 H 0.13 4.01 7.66 -2.91 -0.02 3.99 16 36 H 0.11 1.27 7.92 -2.39 -0.02 1.25 16 37 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.04 0.70 8.12 -2.39 -0.02 0.68 16 Total: -1.00 -69.28 332.47 5.62 -63.65 By element: Atomic # 1 Polarization: 14.25 SS G_CDS: 1.04 Total: 15.29 kcal Atomic # 6 Polarization: -22.87 SS G_CDS: 3.57 Total: -19.30 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: 0.24 Total: -52.56 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -1.25 Total: -52.34 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -69.28 5.62 -63.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850979751.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.549 kcal (2) G-P(sol) polarization free energy of solvation -69.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds