Wall clock time and date at job start Tue Mar 31 2020 06:17:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.66132 * 2 1 4 4 C 1.54698 * 110.74923 * 236.78299 * 2 1 3 5 5 C 1.51646 * 101.92062 * 216.18086 * 4 2 1 6 6 C 1.37743 * 132.17582 * 195.76930 * 5 4 2 7 7 C 1.38350 * 119.97568 * 179.45716 * 6 5 4 8 8 C 1.50707 * 120.11329 * 179.89212 * 7 6 5 9 9 O 1.45192 * 109.47278 * 89.99975 * 8 7 6 10 10 C 1.34230 * 117.00018 * 180.02562 * 9 8 7 11 11 O 1.20826 * 120.00015 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00046 * 180.02562 * 10 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 10 9 14 14 C 1.50697 * 109.47466 * 179.97438 * 13 12 10 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 C 1.38285 * 119.77003 * 0.16506 * 7 6 5 23 23 C 1.37929 * 120.34881 * 359.66982 * 22 7 6 24 24 C 1.38885 * 107.03707 * 15.47589 * 5 4 2 25 25 O 1.36136 * 111.23741 * 0.93922 * 24 5 4 26 26 H 1.09005 * 109.46779 * 183.22148 * 1 2 3 27 27 H 1.09004 * 109.47300 * 303.21527 * 1 2 3 28 28 H 1.08993 * 109.47456 * 63.21634 * 1 2 3 29 29 H 1.09004 * 110.94247 * 98.02613 * 4 2 1 30 30 H 1.09000 * 110.97474 * 334.35109 * 4 2 1 31 31 H 1.08003 * 120.01199 * 359.48668 * 6 5 4 32 32 H 1.09001 * 109.46950 * 329.99363 * 8 7 6 33 33 H 1.08998 * 109.46940 * 210.00202 * 8 7 6 34 34 H 1.09002 * 109.47060 * 299.99765 * 12 10 9 35 35 H 1.09001 * 109.47380 * 59.99853 * 12 10 9 36 36 H 1.09002 * 109.47153 * 299.99998 * 13 12 10 37 37 H 1.08998 * 109.47533 * 59.99628 * 13 12 10 38 38 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 39 39 H 1.07998 * 119.82307 * 179.89866 * 22 7 6 40 40 H 1.07999 * 119.87807 * 180.32367 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9147 1.0200 0.0000 4 6 2.0781 -0.7925 -1.2103 5 6 3.3090 -1.4533 -0.6205 6 6 4.4002 -2.0612 -1.2011 7 6 5.4057 -2.5818 -0.4062 8 6 6.5998 -3.2497 -1.0381 9 8 7.6360 -2.2615 -1.2789 10 6 8.7740 -2.6966 -1.8422 11 8 8.9003 -3.8647 -2.1243 12 6 9.8945 -1.7285 -2.1218 13 6 11.0669 -2.4760 -2.7603 14 6 12.1872 -1.5078 -3.0405 15 1 12.0745 -0.4638 -2.7880 16 6 13.3565 -1.9549 -3.6183 17 7 13.4939 -3.2264 -3.9253 18 14 14.7450 -0.7547 -3.9662 19 1 15.6458 -0.6848 -2.7876 20 1 15.5135 -1.2164 -5.1500 21 1 14.1794 0.5913 -4.2373 22 6 5.3086 -2.4922 0.9703 23 6 4.2184 -1.8810 1.5537 24 6 3.1996 -1.3582 0.7607 25 8 2.0430 -0.7378 1.1223 26 1 -0.3633 -1.0261 0.0578 27 1 -0.3634 0.5630 0.8598 28 1 -0.3634 0.4630 -0.9173 29 1 2.3490 -0.1212 -2.0252 30 1 1.3583 -1.5390 -1.5461 31 1 4.4710 -2.1309 -2.2766 32 1 6.3039 -3.7038 -1.9838 33 1 6.9815 -4.0206 -0.3686 34 1 9.5434 -0.9531 -2.8027 35 1 10.2212 -1.2712 -1.1878 36 1 11.4179 -3.2511 -2.0791 37 1 10.7407 -2.9337 -3.6942 38 1 14.3167 -3.5410 -4.3315 39 1 6.0922 -2.8998 1.5917 40 1 4.1528 -1.8106 2.6294 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851368147.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:55 Heat of formation + Delta-G solvation = -128.049769 kcal Electronic energy + Delta-G solvation = -21607.284974 eV Core-core repulsion = 18158.169176 eV Total energy + Delta-G solvation = -3449.115799 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.21230 -41.45397 -39.00131 -37.42539 -35.63928 -34.17135 -33.25774 -32.57555 -31.80395 -28.57211 -27.74391 -26.70540 -24.12822 -23.19082 -22.66621 -22.06369 -21.45969 -19.08119 -18.54399 -18.16448 -17.99555 -17.47561 -17.30172 -16.50886 -16.47115 -15.88251 -15.27751 -15.14548 -14.68953 -14.35898 -14.23989 -14.13894 -14.08400 -13.77105 -13.67034 -13.33940 -13.21407 -12.98098 -12.82368 -12.66955 -12.49144 -12.19892 -12.00053 -11.88618 -11.75560 -11.70631 -11.59924 -11.41226 -11.25008 -10.57102 -9.94085 -9.18797 -8.19418 -6.33086 0.07360 0.27025 1.24938 1.43846 1.46188 1.57171 1.76523 2.21275 2.43544 2.69874 3.14275 3.34398 3.50116 3.67738 3.83767 3.95233 3.99883 4.03581 4.19796 4.28819 4.31679 4.39275 4.46387 4.51775 4.56782 4.66454 4.73551 4.87672 4.93135 4.93319 5.08147 5.14898 5.22789 5.30689 5.38871 5.47138 5.48432 5.55953 5.56380 5.81460 6.13951 6.14503 6.79987 6.87441 7.37024 8.93152 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033917 B = 0.002365 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.345400 B =11836.542547 C =12127.050689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.095 0.905 4 C -0.102 4.102 5 C -0.187 4.187 6 C -0.052 4.052 7 C -0.133 4.133 8 C 0.107 3.893 9 O -0.353 6.353 10 C 0.466 3.534 11 O -0.544 6.544 12 C -0.095 4.095 13 C 0.038 3.962 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.935 5.935 18 Si 0.975 3.025 19 H -0.272 1.272 20 H -0.286 1.286 21 H -0.256 1.256 22 C -0.063 4.063 23 C -0.148 4.148 24 C 0.100 3.900 25 O -0.318 6.318 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.102 0.898 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.137 0.863 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.115 0.885 36 H -0.010 1.010 37 H -0.010 1.010 38 H 0.264 0.736 39 H 0.148 0.852 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.188 7.602 8.896 29.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 H 0.113 0.887 4 C -0.139 4.139 5 C -0.188 4.188 6 C -0.070 4.070 7 C -0.133 4.133 8 C 0.034 3.966 9 O -0.271 6.271 10 C 0.312 3.688 11 O -0.434 6.434 12 C -0.132 4.132 13 C 0.001 3.999 14 C -0.581 4.581 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.180 1.180 22 C -0.080 4.080 23 C -0.166 4.166 24 C 0.055 3.945 25 O -0.233 6.233 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.120 0.880 29 H 0.127 0.873 30 H 0.121 0.879 31 H 0.155 0.845 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.166 0.834 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -27.228 7.137 8.958 29.539 hybrid contribution 0.958 -0.271 -0.409 1.076 sum -26.270 6.866 8.550 28.467 Atomic orbital electron populations 1.21906 0.90214 1.03589 1.04483 1.23697 0.97162 0.95491 0.82335 0.88715 1.21967 0.93419 0.99720 0.98817 1.21029 0.98497 1.05159 0.94130 1.20374 0.91465 0.94641 1.00556 1.19366 0.95313 1.04485 0.94122 1.21817 0.84236 0.89401 1.01108 1.86607 1.24834 1.42596 1.73048 1.24486 0.82873 0.89036 0.72448 1.90629 1.81399 1.21017 1.50306 1.21522 0.90296 0.97046 1.04339 1.18800 0.91809 0.94879 0.94415 1.21644 1.00002 0.95807 1.40685 0.90483 1.26110 1.01846 0.97098 0.95252 1.70162 1.27711 1.16365 1.43291 0.85306 0.78181 0.78999 0.77674 1.19723 1.21164 1.17999 1.21009 0.97082 0.96055 0.93900 1.20456 0.92174 1.03139 1.00832 1.19862 0.87157 0.94134 0.93369 1.86825 1.34226 1.62760 1.39505 0.91791 0.91075 0.87969 0.87313 0.87926 0.84474 0.90373 0.90111 0.86697 0.86679 0.99126 0.99116 0.92759 0.83401 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.59 71.98 0.69 -0.46 16 2 C 0.07 0.89 4.25 31.17 0.13 1.02 16 3 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16 4 C -0.10 -1.33 6.64 30.73 0.20 -1.13 16 5 C -0.19 -3.71 6.27 -19.52 -0.12 -3.84 16 6 C -0.05 -1.12 9.70 22.18 0.22 -0.90 16 7 C -0.13 -3.11 5.53 -19.82 -0.11 -3.22 16 8 C 0.11 2.92 5.60 71.24 0.40 3.32 16 9 O -0.35 -11.57 10.20 -51.41 -0.52 -12.09 16 10 C 0.47 18.46 7.96 71.24 0.57 19.03 16 11 O -0.54 -25.43 15.73 21.97 0.35 -25.08 16 12 C -0.09 -3.84 5.75 29.85 0.17 -3.67 16 13 C 0.04 2.08 4.26 29.85 0.13 2.20 16 14 C -0.54 -30.42 9.11 25.60 0.23 -30.19 16 15 H 0.08 3.94 7.74 -2.91 -0.02 3.91 16 16 C -0.01 -0.30 5.46 84.65 0.46 0.16 16 17 N -0.94 -58.25 13.29 21.45 0.28 -57.97 16 18 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 20 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.06 -1.31 9.68 22.21 0.21 -1.10 16 23 C -0.15 -2.99 10.06 22.45 0.23 -2.77 16 24 C 0.10 2.15 7.04 22.68 0.16 2.31 16 25 O -0.32 -6.40 10.82 -95.10 -1.03 -7.43 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.10 7.93 -2.39 -0.02 1.09 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 33 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 34 H 0.11 4.15 8.14 -2.39 -0.02 4.13 16 35 H 0.12 4.16 8.14 -2.39 -0.02 4.14 16 36 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 37 H -0.01 -0.58 8.10 -2.39 -0.02 -0.60 16 38 H 0.26 15.38 8.31 -92.71 -0.77 14.60 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -72.96 345.30 5.70 -67.27 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: 1.03 Total: 8.75 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 3.57 Total: -19.23 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.28 Total: -57.97 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -1.21 Total: -44.61 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -72.96 5.70 -67.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851368147.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.784 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds