Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.67137 * 2 1 4 4 C 1.54703 * 110.75334 * 123.42591 * 2 1 3 5 5 C 1.51636 * 101.94670 * 143.54651 * 4 2 1 6 6 C 1.37752 * 132.17184 * 164.39160 * 5 4 2 7 7 C 1.38349 * 119.97587 * 180.90290 * 6 5 4 8 8 C 1.50701 * 120.11176 * 179.97438 * 7 6 5 9 9 O 1.45198 * 109.47036 * 89.99847 * 8 7 6 10 10 C 1.34231 * 116.99983 * 179.97438 * 9 8 7 11 11 O 1.20822 * 120.00142 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00053 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47248 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47065 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00110 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47052 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47022 * 120.00380 * 18 16 14 21 21 H 1.48502 * 109.47008 * 240.00607 * 18 16 14 22 22 C 1.38280 * 119.76951 * 0.27219 * 7 6 5 23 23 C 1.37932 * 120.34976 * 359.25712 * 22 7 6 24 24 C 1.38888 * 107.04651 * 344.86146 * 5 4 2 25 25 O 1.36132 * 111.21336 * 358.56049 * 24 5 4 26 26 H 1.08995 * 109.47185 * 181.76634 * 1 2 3 27 27 H 1.09007 * 109.46964 * 301.76889 * 1 2 3 28 28 H 1.09001 * 109.47400 * 61.76718 * 1 2 3 29 29 H 1.09002 * 110.93375 * 25.38139 * 4 2 1 30 30 H 1.09000 * 110.93487 * 261.71401 * 4 2 1 31 31 H 1.07995 * 120.00972 * 0.92740 * 6 5 4 32 32 H 1.09002 * 109.47060 * 210.00071 * 8 7 6 33 33 H 1.09001 * 109.47380 * 330.00158 * 8 7 6 34 34 H 1.09008 * 109.47488 * 300.00148 * 12 10 9 35 35 H 1.09001 * 109.47517 * 59.99934 * 12 10 9 36 36 H 1.08998 * 109.47295 * 300.00082 * 13 12 10 37 37 H 1.09004 * 109.47225 * 60.00231 * 13 12 10 38 38 H 0.96999 * 119.99519 * 180.02562 * 17 16 14 39 39 H 1.07999 * 119.82458 * 179.51454 * 22 7 6 40 40 H 1.08002 * 119.88449 * 180.30264 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0782 -0.7969 1.2074 5 6 3.3052 -1.4613 0.6139 6 6 4.3940 -2.0769 1.1912 7 6 5.3999 -2.5927 0.3936 8 6 6.5927 -3.2661 1.0219 9 8 6.3220 -4.6843 1.1765 10 6 7.2914 -5.4335 1.7248 11 8 8.3315 -4.9212 2.0647 12 6 7.0825 -6.9136 1.9164 13 6 8.3300 -7.5261 2.5563 14 6 8.1208 -9.0061 2.7484 15 1 7.1913 -9.4641 2.4441 16 6 9.1166 -9.7757 3.3117 17 7 10.2487 -9.2180 3.6818 18 14 8.8576 -11.6104 3.5492 19 1 7.5096 -11.9882 3.0539 20 1 9.8913 -12.3586 2.7897 21 1 8.9662 -11.9428 4.9925 22 6 5.3100 -2.4826 -0.9819 23 6 4.2161 -1.8752 -1.5624 24 6 3.1972 -1.3567 -0.7668 25 8 2.0394 -0.7367 -1.1248 26 1 -0.3633 -1.0271 0.0317 27 1 -0.3633 0.5411 0.8738 28 1 -0.3634 0.4861 -0.9054 29 1 1.3561 -1.5413 1.5429 30 1 2.3534 -0.1281 2.0229 31 1 4.4621 -2.1571 2.2660 32 1 7.4651 -3.1303 0.3828 33 1 6.7861 -2.8246 1.9995 34 1 6.2231 -7.0782 2.5664 35 1 6.9019 -7.3832 0.9494 36 1 9.1896 -7.3616 1.9067 37 1 8.5102 -7.0565 3.5233 38 1 10.9494 -9.7595 4.0777 39 1 6.0985 -2.8779 -1.6051 40 1 4.1513 -1.7977 -2.6377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000851368148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -109.797569 kcal Electronic energy + Delta-G solvation = -21604.369696 eV Core-core repulsion = 18156.045372 eV Total energy + Delta-G solvation = -3448.324324 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.46095 -39.95400 -38.07756 -35.99283 -33.57447 -33.52047 -31.91026 -31.21173 -30.89386 -27.47519 -26.46503 -25.39513 -22.53024 -22.16147 -22.05807 -21.13992 -19.78807 -17.82718 -17.31791 -17.15794 -16.50238 -16.15026 -15.97968 -15.49868 -14.71471 -14.49954 -14.45479 -14.09176 -13.55231 -13.45756 -13.35091 -13.17902 -12.84988 -12.56113 -12.45060 -12.22545 -12.12376 -11.91014 -11.50933 -11.18387 -11.12995 -10.97635 -10.93798 -10.61938 -10.36596 -10.04102 -9.92238 -9.56741 -9.16167 -9.12579 -8.37702 -8.34761 -6.01359 -4.06029 0.96033 1.09169 2.84102 2.86498 3.05219 3.31075 3.38365 3.42140 3.65927 4.05392 4.12094 4.44737 4.47967 4.59559 4.65359 4.73244 4.86043 5.01550 5.11263 5.16832 5.22268 5.34136 5.34232 5.37995 5.44504 5.49840 5.62518 5.69773 5.82475 5.98048 6.11817 6.13707 6.21655 6.32205 6.36723 6.65924 6.90885 6.95600 7.67346 7.74079 7.98532 8.26563 8.42633 9.01406 9.58031 11.09688 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.002366 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.957824 B =11829.880598 C =12132.496272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.087 0.913 4 C -0.105 4.105 5 C -0.180 4.180 6 C -0.045 4.045 7 C -0.117 4.117 8 C 0.109 3.891 9 O -0.361 6.361 10 C 0.456 3.544 11 O -0.506 6.506 12 C -0.103 4.103 13 C 0.033 3.967 14 C -0.527 4.527 15 H 0.059 0.941 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.896 3.104 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.059 4.059 23 C -0.141 4.141 24 C 0.112 3.888 25 O -0.303 6.303 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.261 0.739 39 H 0.135 0.865 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.000 20.282 -8.017 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 H 0.104 0.896 4 C -0.142 4.142 5 C -0.181 4.181 6 C -0.063 4.063 7 C -0.117 4.117 8 C 0.036 3.964 9 O -0.280 6.280 10 C 0.300 3.700 11 O -0.393 6.393 12 C -0.141 4.141 13 C -0.005 4.005 14 C -0.565 4.565 15 H 0.078 0.922 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.723 3.277 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.078 4.078 23 C -0.159 4.159 24 C 0.066 3.934 25 O -0.217 6.217 26 H 0.087 0.913 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.111 0.889 30 H 0.110 0.890 31 H 0.146 0.854 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.153 0.847 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.644 20.447 -8.045 28.180 hybrid contribution 0.075 -0.826 0.335 0.894 sum -17.569 19.621 -7.710 27.443 Atomic orbital electron populations 1.21892 0.92025 1.03591 1.03207 1.23401 0.95828 0.95393 0.83364 0.89550 1.21863 0.94756 0.99276 0.98325 1.20707 0.97778 1.05618 0.93959 1.20223 0.91092 0.94944 1.00069 1.19426 0.97051 1.01697 0.93567 1.21591 0.94906 0.78962 1.00980 1.86648 1.45919 1.20488 1.74925 1.24792 0.80971 0.91311 0.72932 1.90634 1.27749 1.74225 1.46692 1.21770 1.04616 0.84022 1.03678 1.19027 0.90192 0.94756 0.96490 1.21199 1.01437 0.92768 1.41135 0.92246 1.25033 0.95144 0.98783 0.95455 1.70008 1.05491 1.35739 1.41569 0.86484 0.78216 0.85172 0.77803 1.19647 1.20973 1.20974 1.20834 0.96919 0.95901 0.94102 1.20225 0.92241 1.03597 0.99866 1.19582 0.86753 0.94182 0.92844 1.86850 1.34438 1.62609 1.37838 0.91332 0.90221 0.91250 0.88920 0.89023 0.85418 0.90464 0.90615 0.88977 0.88941 0.95570 0.95591 0.92912 0.84683 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.60 37.16 0.36 -0.42 16 2 C 0.08 0.56 4.26 -25.84 -0.11 0.45 16 3 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.11 -0.80 6.65 -26.53 -0.18 -0.97 16 5 C -0.18 -1.91 6.27 -104.10 -0.65 -2.56 16 6 C -0.05 -0.51 9.70 -39.72 -0.39 -0.89 16 7 C -0.12 -1.42 5.53 -104.56 -0.58 -2.00 16 8 C 0.11 1.51 5.60 36.01 0.20 1.71 16 9 O -0.36 -6.10 10.20 -39.26 -0.40 -6.50 16 10 C 0.46 9.06 7.96 36.00 0.29 9.35 16 11 O -0.51 -11.54 15.73 -18.75 -0.29 -11.83 16 12 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 13 C 0.03 0.86 4.26 -27.88 -0.12 0.74 16 14 C -0.53 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -27.08 13.29 55.43 0.74 -26.35 16 18 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 C -0.06 -0.65 9.68 -39.68 -0.38 -1.04 16 23 C -0.14 -1.50 10.06 -39.31 -0.40 -1.90 16 24 C 0.11 1.26 7.03 -38.95 -0.27 0.99 16 25 O -0.30 -3.25 10.81 -20.16 -0.22 -3.46 16 26 H 0.07 0.39 8.11 -51.93 -0.42 -0.03 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.09 0.65 7.90 -51.93 -0.41 0.24 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 32 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 33 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 34 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 35 H 0.09 1.76 8.14 -51.93 -0.42 1.33 16 36 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 37 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 39 H 0.14 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -33.44 345.24 -8.65 -42.09 By element: Atomic # 1 Polarization: 2.60 SS G_CDS: -5.86 Total: -3.26 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -2.80 Total: -12.39 kcal Atomic # 7 Polarization: -27.08 SS G_CDS: 0.74 Total: -26.35 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.91 Total: -21.80 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.44 -8.65 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851368148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.705 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds