Wall clock time and date at job start Tue Mar 31 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.67137 * 2 1 4 4 C 1.54703 * 110.75334 * 123.42591 * 2 1 3 5 5 C 1.51636 * 101.94670 * 143.54651 * 4 2 1 6 6 C 1.37752 * 132.17184 * 164.39160 * 5 4 2 7 7 C 1.38349 * 119.97587 * 180.90290 * 6 5 4 8 8 C 1.50701 * 120.11176 * 179.97438 * 7 6 5 9 9 O 1.45198 * 109.47036 * 89.99847 * 8 7 6 10 10 C 1.34231 * 116.99983 * 179.97438 * 9 8 7 11 11 O 1.20822 * 120.00142 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00053 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47248 * 180.02562 * 12 10 9 14 14 C 1.50701 * 109.47065 * 179.97438 * 13 12 10 15 15 H 1.07994 * 120.00127 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99841 * 179.97438 * 14 13 12 17 17 N 1.31522 * 119.99893 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00110 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47052 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47022 * 120.00380 * 18 16 14 21 21 H 1.48502 * 109.47008 * 240.00607 * 18 16 14 22 22 C 1.38280 * 119.76951 * 0.27219 * 7 6 5 23 23 C 1.37932 * 120.34976 * 359.25712 * 22 7 6 24 24 C 1.38888 * 107.04651 * 344.86146 * 5 4 2 25 25 O 1.36132 * 111.21336 * 358.56049 * 24 5 4 26 26 H 1.08995 * 109.47185 * 181.76634 * 1 2 3 27 27 H 1.09007 * 109.46964 * 301.76889 * 1 2 3 28 28 H 1.09001 * 109.47400 * 61.76718 * 1 2 3 29 29 H 1.09002 * 110.93375 * 25.38139 * 4 2 1 30 30 H 1.09000 * 110.93487 * 261.71401 * 4 2 1 31 31 H 1.07995 * 120.00972 * 0.92740 * 6 5 4 32 32 H 1.09002 * 109.47060 * 210.00071 * 8 7 6 33 33 H 1.09001 * 109.47380 * 330.00158 * 8 7 6 34 34 H 1.09008 * 109.47488 * 300.00148 * 12 10 9 35 35 H 1.09001 * 109.47517 * 59.99934 * 12 10 9 36 36 H 1.08998 * 109.47295 * 300.00082 * 13 12 10 37 37 H 1.09004 * 109.47225 * 60.00231 * 13 12 10 38 38 H 0.96999 * 119.99519 * 180.02562 * 17 16 14 39 39 H 1.07999 * 119.82458 * 179.51454 * 22 7 6 40 40 H 1.08002 * 119.88449 * 180.30264 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0782 -0.7969 1.2074 5 6 3.3052 -1.4613 0.6139 6 6 4.3940 -2.0769 1.1912 7 6 5.3999 -2.5927 0.3936 8 6 6.5927 -3.2661 1.0219 9 8 6.3220 -4.6843 1.1765 10 6 7.2914 -5.4335 1.7248 11 8 8.3315 -4.9212 2.0647 12 6 7.0825 -6.9136 1.9164 13 6 8.3300 -7.5261 2.5563 14 6 8.1208 -9.0061 2.7484 15 1 7.1913 -9.4641 2.4441 16 6 9.1166 -9.7757 3.3117 17 7 10.2487 -9.2180 3.6818 18 14 8.8576 -11.6104 3.5492 19 1 7.5096 -11.9882 3.0539 20 1 9.8913 -12.3586 2.7897 21 1 8.9662 -11.9428 4.9925 22 6 5.3100 -2.4826 -0.9819 23 6 4.2161 -1.8752 -1.5624 24 6 3.1972 -1.3567 -0.7668 25 8 2.0394 -0.7367 -1.1248 26 1 -0.3633 -1.0271 0.0317 27 1 -0.3633 0.5411 0.8738 28 1 -0.3634 0.4861 -0.9054 29 1 1.3561 -1.5413 1.5429 30 1 2.3534 -0.1281 2.0229 31 1 4.4621 -2.1571 2.2660 32 1 7.4651 -3.1303 0.3828 33 1 6.7861 -2.8246 1.9995 34 1 6.2231 -7.0782 2.5664 35 1 6.9019 -7.3832 0.9494 36 1 9.1896 -7.3616 1.9067 37 1 8.5102 -7.0565 3.5233 38 1 10.9494 -9.7595 4.0777 39 1 6.0985 -2.8779 -1.6051 40 1 4.1513 -1.7977 -2.6377 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000851368148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:57 Heat of formation + Delta-G solvation = -128.062334 kcal Electronic energy + Delta-G solvation = -21605.161716 eV Core-core repulsion = 18156.045372 eV Total energy + Delta-G solvation = -3449.116344 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.21278 -41.45511 -39.00106 -37.42594 -35.64105 -34.16937 -33.25862 -32.57628 -31.80274 -28.57310 -27.74534 -26.70384 -24.12948 -23.19130 -22.66502 -22.06308 -21.46108 -19.08512 -18.54189 -18.16171 -18.00346 -17.47448 -17.31762 -16.49368 -16.43907 -15.90108 -15.29918 -15.14692 -14.68168 -14.44907 -14.26144 -14.15562 -13.91256 -13.76437 -13.68163 -13.34286 -13.20764 -13.00464 -12.85486 -12.70908 -12.46971 -12.13105 -12.01110 -11.90202 -11.76434 -11.72339 -11.59774 -11.40545 -11.23536 -10.58250 -9.93960 -9.18614 -8.19807 -6.33335 0.07070 0.27056 1.24790 1.43786 1.44671 1.58201 1.78647 2.19809 2.43171 2.69971 3.14000 3.34588 3.50320 3.68116 3.83389 3.95873 4.00334 4.02470 4.19755 4.28901 4.32151 4.39272 4.46144 4.51665 4.56795 4.66276 4.74191 4.87359 4.92869 4.93326 5.08319 5.15042 5.22882 5.30794 5.38782 5.47224 5.48457 5.56159 5.56278 5.81372 6.13838 6.14630 6.79938 6.87353 7.36815 8.93006 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033446 B = 0.002366 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.957824 B =11829.880598 C =12132.496272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.069 3.931 3 H 0.099 0.901 4 C -0.103 4.103 5 C -0.187 4.187 6 C -0.052 4.052 7 C -0.133 4.133 8 C 0.107 3.893 9 O -0.354 6.354 10 C 0.466 3.534 11 O -0.543 6.543 12 C -0.095 4.095 13 C 0.038 3.962 14 C -0.543 4.543 15 H 0.077 0.923 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.974 3.026 19 H -0.254 1.254 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.062 4.062 23 C -0.148 4.148 24 C 0.100 3.900 25 O -0.319 6.319 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.137 0.863 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.115 0.885 35 H 0.115 0.885 36 H -0.009 1.009 37 H -0.009 1.009 38 H 0.264 0.736 39 H 0.148 0.852 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.375 20.186 -8.396 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 H 0.117 0.883 4 C -0.140 4.140 5 C -0.188 4.188 6 C -0.071 4.071 7 C -0.133 4.133 8 C 0.034 3.966 9 O -0.271 6.271 10 C 0.312 3.688 11 O -0.433 6.433 12 C -0.132 4.132 13 C 0.001 3.999 14 C -0.580 4.580 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.798 3.202 19 H -0.177 1.177 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.080 4.080 23 C -0.166 4.166 24 C 0.055 3.945 25 O -0.234 6.234 26 H 0.080 0.920 27 H 0.121 0.879 28 H 0.089 0.911 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.155 0.845 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.009 0.991 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.166 0.834 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -20.064 20.370 -8.442 29.812 hybrid contribution 0.747 -0.655 0.409 1.074 sum -19.317 19.715 -8.033 28.747 Atomic orbital electron populations 1.21919 0.90412 1.03597 1.04407 1.23709 0.97101 0.95549 0.82218 0.88338 1.21969 0.93488 0.99610 0.98894 1.21032 0.98406 1.05215 0.94144 1.20376 0.91119 0.94955 1.00605 1.19359 0.96987 1.02777 0.94184 1.21812 0.96187 0.77016 1.01550 1.86609 1.44445 1.22223 1.73861 1.24476 0.80716 0.91266 0.72364 1.90627 1.29329 1.74900 1.48463 1.21524 1.02248 0.84708 1.04750 1.18806 0.91779 0.94899 0.94435 1.21674 1.02081 0.93539 1.40740 0.90505 1.26109 0.94719 1.04463 0.95019 1.70168 1.06704 1.37992 1.42685 0.85258 0.78886 0.78257 0.77759 1.17750 1.20616 1.20583 1.21007 0.97419 0.95750 0.93863 1.20451 0.92052 1.03308 1.00805 1.19860 0.87061 0.94203 0.93388 1.86837 1.34168 1.62864 1.39526 0.91977 0.87903 0.91093 0.88287 0.87039 0.84478 0.90084 0.90340 0.86726 0.86700 0.99090 0.99098 0.92752 0.83399 0.83600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.60 71.98 0.69 -0.51 16 2 C 0.07 0.88 4.26 31.17 0.13 1.01 16 3 H 0.10 0.99 8.14 -2.39 -0.02 0.98 16 4 C -0.10 -1.34 6.65 30.73 0.20 -1.13 16 5 C -0.19 -3.71 6.27 -19.53 -0.12 -3.83 16 6 C -0.05 -1.12 9.70 22.18 0.22 -0.91 16 7 C -0.13 -3.11 5.53 -19.83 -0.11 -3.22 16 8 C 0.11 2.92 5.60 71.24 0.40 3.32 16 9 O -0.35 -11.65 10.20 -51.42 -0.52 -12.17 16 10 C 0.47 18.53 7.96 71.24 0.57 19.09 16 11 O -0.54 -25.42 15.73 21.98 0.35 -25.07 16 12 C -0.10 -3.87 5.75 29.85 0.17 -3.70 16 13 C 0.04 2.07 4.26 29.85 0.13 2.20 16 14 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 15 H 0.08 3.95 7.74 -2.91 -0.02 3.93 16 16 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 17 N -0.94 -58.29 13.29 21.45 0.28 -58.01 16 18 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 19 H -0.25 -10.61 7.11 99.48 0.71 -9.90 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 C -0.06 -1.31 9.68 22.21 0.21 -1.10 16 23 C -0.15 -2.99 10.06 22.45 0.23 -2.77 16 24 C 0.10 2.15 7.03 22.68 0.16 2.31 16 25 O -0.32 -6.42 10.81 -95.05 -1.03 -7.45 16 26 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 27 H 0.10 0.37 8.14 -2.38 -0.02 0.35 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 1.17 7.90 -2.39 -0.02 1.15 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.14 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.08 2.14 8.08 -2.39 -0.02 2.12 16 33 H 0.08 2.09 8.08 -2.39 -0.02 2.07 16 34 H 0.11 4.16 8.14 -2.38 -0.02 4.14 16 35 H 0.11 4.17 8.14 -2.39 -0.02 4.16 16 36 H -0.01 -0.57 8.10 -2.39 -0.02 -0.59 16 37 H -0.01 -0.57 8.10 -2.38 -0.02 -0.59 16 38 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 39 H 0.15 2.60 8.06 -2.91 -0.02 2.57 16 40 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -73.17 345.24 5.70 -67.47 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: 1.03 Total: 8.61 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 3.57 Total: -19.28 kcal Atomic # 7 Polarization: -58.29 SS G_CDS: 0.28 Total: -58.01 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -1.21 Total: -44.69 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -73.17 5.70 -67.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000851368148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.595 kcal (2) G-P(sol) polarization free energy of solvation -73.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds