Wall clock time and date at job start Tue Mar 31 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47414 * 2 1 4 4 C 1.35668 * 117.00570 * 180.02562 * 3 2 1 5 5 C 1.39280 * 119.82774 * 0.02562 * 4 3 2 6 6 C 1.36420 * 120.40515 * 179.97438 * 5 4 3 7 7 C 1.40183 * 120.05926 * 359.76570 * 6 5 4 8 8 C 1.46490 * 120.16900 * 180.27284 * 7 6 5 9 9 O 1.21335 * 120.00007 * 185.25088 * 8 7 6 10 10 C 1.40644 * 119.66080 * 0.50906 * 7 6 5 11 11 O 1.35615 * 120.19817 * 179.74444 * 10 7 6 12 12 C 1.42894 * 117.00099 * 185.33572 * 11 10 7 13 13 C 1.52994 * 109.47246 * 177.57005 * 12 11 10 14 14 C 1.50703 * 115.54570 * 274.09107 * 13 12 11 15 15 H 1.08000 * 119.99811 * 115.04045 * 14 13 12 16 16 C 1.37877 * 120.00065 * 295.03127 * 14 13 12 17 17 N 1.31514 * 119.99639 * 355.51978 * 16 14 13 18 18 Si 1.86803 * 120.00141 * 175.50875 * 16 14 13 19 19 H 1.48498 * 109.46724 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46810 * 120.00387 * 18 16 14 21 21 H 1.48496 * 109.47579 * 240.00785 * 18 16 14 22 22 C 1.52994 * 117.50234 * 128.38106 * 13 12 11 23 23 C 1.52993 * 60.00309 * 252.50833 * 22 13 12 24 24 C 1.38418 * 119.60479 * 359.47299 * 10 7 6 25 25 H 1.08991 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46694 * 299.99982 * 1 2 3 27 27 H 1.08999 * 109.46833 * 59.99737 * 1 2 3 28 28 H 1.09001 * 109.47383 * 239.99741 * 2 1 3 29 29 H 1.09002 * 109.47192 * 119.99598 * 2 1 3 30 30 H 1.07997 * 119.80021 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.97191 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.99659 * 5.25674 * 8 7 6 33 33 H 1.09000 * 109.47406 * 57.56306 * 12 11 10 34 34 H 1.09008 * 109.46697 * 297.56761 * 12 11 10 35 35 H 0.97001 * 119.99741 * 185.01881 * 17 16 14 36 36 H 1.08994 * 117.50058 * 359.97438 * 22 13 12 37 37 H 1.09007 * 117.49949 * 145.01820 * 22 13 12 38 38 H 1.09001 * 117.50119 * 252.51177 * 23 22 13 39 39 H 1.09001 * 117.51837 * 107.47791 * 23 22 13 40 40 H 1.07998 * 120.03585 * 180.25605 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 4.1965 0.4180 -0.0016 6 6 5.5507 0.5832 -0.0027 7 6 6.1008 1.8725 -0.0077 8 6 7.5546 2.0527 -0.0149 9 8 8.0284 3.1659 0.0770 10 6 5.2499 2.9923 -0.0007 11 8 5.7704 4.2446 -0.0002 12 6 4.8494 5.3299 0.1254 13 6 5.6203 6.6508 0.1671 14 6 6.1107 7.0743 1.5277 15 1 7.1709 7.1328 1.7254 16 6 5.2060 7.3873 2.5199 17 7 3.9180 7.4019 2.2546 18 14 5.8098 7.7905 4.2411 19 1 7.2919 7.7053 4.2783 20 1 5.3841 9.1657 4.6055 21 1 5.2335 6.8214 5.2076 22 6 5.1879 7.7521 -0.8029 23 6 6.4967 6.9957 -1.0387 24 6 3.8779 2.8086 -0.0001 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7773 -0.5773 -0.0016 31 1 6.1996 -0.2802 -0.0039 32 1 8.2045 1.1946 -0.1020 33 1 4.2755 5.2149 1.0449 34 1 4.1714 5.3317 -0.7282 35 1 3.2867 7.6923 2.9314 36 1 4.3544 7.5356 -1.4711 37 1 5.2579 8.7835 -0.4569 38 1 7.4278 7.5293 -0.8479 39 1 6.5243 6.2814 -1.8615 40 1 3.2180 3.6635 0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853636028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:08 Heat of formation + Delta-G solvation = -60.209293 kcal Electronic energy + Delta-G solvation = -22981.932938 eV Core-core repulsion = 19535.758923 eV Total energy + Delta-G solvation = -3446.174015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.41562 -39.03333 -37.93119 -36.63050 -35.57340 -32.21465 -32.01114 -30.13388 -29.74963 -26.71461 -25.29210 -24.31168 -23.53019 -21.84009 -21.13695 -20.45620 -19.11596 -18.54166 -16.74583 -16.39058 -16.25703 -16.08329 -15.64163 -15.04532 -14.67460 -14.47787 -14.20533 -13.81920 -13.71890 -13.33453 -13.26710 -12.94198 -12.76165 -12.60160 -12.09188 -11.80960 -11.72879 -11.39079 -11.00749 -10.97626 -10.86235 -10.73032 -10.47178 -10.21269 -10.18573 -9.52315 -9.20688 -8.84628 -8.53739 -8.37830 -8.17320 -7.81254 -6.05665 -4.09065 1.02216 1.64059 2.85277 3.05653 3.29819 3.38095 3.44570 3.82561 4.03798 4.41853 4.61922 4.67267 4.71030 4.89201 4.95497 5.08427 5.17114 5.27146 5.41553 5.49062 5.56726 5.60644 5.64531 5.82767 5.83523 6.02431 6.22666 6.24921 6.33370 6.37303 6.48590 6.57349 6.68799 6.79865 6.84150 7.03975 7.37005 7.40323 7.44692 7.90115 8.00292 8.11645 8.42116 8.92007 9.55070 11.03204 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.004976 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.884378 B = 5625.951182 C = 6406.645386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.311 6.311 4 C 0.199 3.801 5 C -0.273 4.273 6 C 0.004 3.996 7 C -0.276 4.276 8 C 0.372 3.628 9 O -0.435 6.435 10 C 0.241 3.759 11 O -0.265 6.265 12 C 0.095 3.905 13 C 0.047 3.953 14 C -0.482 4.482 15 H 0.064 0.936 16 C 0.067 3.933 17 N -0.887 5.887 18 Si 0.892 3.108 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.167 4.167 23 C -0.192 4.192 24 C -0.265 4.265 25 H 0.077 0.923 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.128 0.872 31 H 0.134 0.866 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.035 0.965 35 H 0.261 0.739 36 H 0.064 0.936 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.873 -17.246 -5.430 18.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.022 4.022 3 O -0.224 6.224 4 C 0.152 3.848 5 C -0.292 4.292 6 C -0.015 4.015 7 C -0.278 4.278 8 C 0.230 3.770 9 O -0.307 6.307 10 C 0.190 3.810 11 O -0.174 6.174 12 C 0.021 3.979 13 C 0.047 3.953 14 C -0.520 4.520 15 H 0.082 0.918 16 C -0.135 4.135 17 N -0.525 5.525 18 Si 0.720 3.280 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.209 1.209 22 C -0.204 4.204 23 C -0.229 4.229 24 C -0.284 4.284 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.152 0.848 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.757 -16.411 -5.281 17.644 hybrid contribution -0.289 -0.111 0.957 1.006 sum -4.046 -16.522 -4.323 17.551 Atomic orbital electron populations 1.21786 0.92770 1.02722 1.03757 1.22818 0.95873 0.81938 1.01526 1.86057 1.19382 1.29445 1.87538 1.18944 0.81952 0.93491 0.90386 1.20689 0.94350 0.97687 1.16513 1.20599 0.94344 0.95300 0.91237 1.20294 0.96569 0.91568 1.19412 1.23460 0.88471 0.92263 0.72852 1.90675 1.77890 1.28789 1.33304 1.19171 0.90023 0.86386 0.85445 1.86377 1.37225 1.10929 1.82881 1.22840 0.90580 0.84185 1.00265 1.18684 0.96953 0.88896 0.90768 1.20565 0.92999 1.44995 0.93437 0.91773 1.24999 0.94824 0.95008 0.98712 1.69946 1.01076 1.46906 1.34554 0.86511 0.79305 0.77805 0.84367 1.19507 1.20964 1.20920 1.22782 0.95892 0.98267 1.03508 1.22770 0.94732 1.03899 1.01540 1.20575 0.94619 0.96411 1.16828 0.90428 0.91378 0.91453 0.91873 0.91831 0.85451 0.84794 0.89345 0.89811 0.94670 0.92913 0.91736 0.89723 0.90226 0.91243 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.79 16 2 C 0.05 0.50 5.45 37.16 0.20 0.71 16 3 O -0.31 -4.40 10.12 -18.71 -0.19 -4.59 16 4 C 0.20 3.05 6.69 -39.01 -0.26 2.79 16 5 C -0.27 -3.41 8.96 -39.85 -0.36 -3.77 16 6 C 0.00 0.04 9.73 -39.51 -0.38 -0.34 16 7 C -0.28 -4.50 5.88 -104.94 -0.62 -5.12 16 8 C 0.37 5.90 11.42 34.05 0.39 6.29 16 9 O -0.43 -9.29 15.99 -16.37 -0.26 -9.56 16 10 C 0.24 4.76 6.69 -38.61 -0.26 4.50 16 11 O -0.27 -6.21 8.12 -40.42 -0.33 -6.54 16 12 C 0.10 2.31 4.56 37.15 0.17 2.48 16 13 C 0.05 1.23 1.58 -155.66 -0.25 0.99 16 14 C -0.48 -13.74 8.83 -34.44 -0.30 -14.05 16 15 H 0.06 1.87 7.82 -52.49 -0.41 1.46 16 16 C 0.07 1.87 5.26 -17.82 -0.09 1.77 16 17 N -0.89 -25.19 12.42 55.43 0.69 -24.51 16 18 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.17 -3.95 9.88 -26.74 -0.26 -4.21 16 23 C -0.19 -4.49 9.85 -26.73 -0.26 -4.75 16 24 C -0.26 -4.85 8.97 -39.33 -0.35 -5.20 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.06 0.50 7.64 -51.93 -0.40 0.10 16 29 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 30 H 0.13 1.18 6.26 -52.49 -0.33 0.85 16 31 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.09 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.08 2.20 6.76 -51.93 -0.35 1.85 16 34 H 0.04 0.79 7.32 -51.92 -0.38 0.41 16 35 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 36 H 0.06 1.41 8.05 -51.93 -0.42 1.00 16 37 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 38 H 0.08 1.83 8.14 -51.93 -0.42 1.41 16 39 H 0.07 1.53 8.14 -51.93 -0.42 1.10 16 40 H 0.14 2.75 6.32 -52.49 -0.33 2.42 16 LS Contribution 342.66 15.07 5.16 5.16 Total: -1.00 -32.81 342.66 -7.74 -40.55 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -5.53 Total: 1.45 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -2.26 Total: -18.70 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.69 Total: -24.51 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.78 Total: -20.68 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -32.81 -7.74 -40.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853636028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.656 kcal (2) G-P(sol) polarization free energy of solvation -32.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds