Wall clock time and date at job start Tue Mar 31 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42898 * 109.47414 * 2 1 4 4 C 1.35668 * 117.00570 * 180.02562 * 3 2 1 5 5 C 1.39280 * 119.82774 * 0.02562 * 4 3 2 6 6 C 1.36420 * 120.40515 * 179.97438 * 5 4 3 7 7 C 1.40183 * 120.05926 * 359.76570 * 6 5 4 8 8 C 1.46490 * 120.16900 * 180.27284 * 7 6 5 9 9 O 1.21335 * 120.00007 * 185.25088 * 8 7 6 10 10 C 1.40644 * 119.66080 * 0.50906 * 7 6 5 11 11 O 1.35615 * 120.19817 * 179.74444 * 10 7 6 12 12 C 1.42894 * 117.00099 * 185.33572 * 11 10 7 13 13 C 1.52994 * 109.47246 * 177.57005 * 12 11 10 14 14 C 1.50703 * 115.54570 * 274.09107 * 13 12 11 15 15 H 1.08000 * 119.99811 * 115.04045 * 14 13 12 16 16 C 1.37877 * 120.00065 * 295.03127 * 14 13 12 17 17 N 1.31514 * 119.99639 * 355.51978 * 16 14 13 18 18 Si 1.86803 * 120.00141 * 175.50875 * 16 14 13 19 19 H 1.48498 * 109.46724 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46810 * 120.00387 * 18 16 14 21 21 H 1.48496 * 109.47579 * 240.00785 * 18 16 14 22 22 C 1.52994 * 117.50234 * 128.38106 * 13 12 11 23 23 C 1.52993 * 60.00309 * 252.50833 * 22 13 12 24 24 C 1.38418 * 119.60479 * 359.47299 * 10 7 6 25 25 H 1.08991 * 109.46967 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.46694 * 299.99982 * 1 2 3 27 27 H 1.08999 * 109.46833 * 59.99737 * 1 2 3 28 28 H 1.09001 * 109.47383 * 239.99741 * 2 1 3 29 29 H 1.09002 * 109.47192 * 119.99598 * 2 1 3 30 30 H 1.07997 * 119.80021 * 359.97438 * 5 4 3 31 31 H 1.08000 * 119.97191 * 180.02562 * 6 5 4 32 32 H 1.07997 * 119.99659 * 5.25674 * 8 7 6 33 33 H 1.09000 * 109.47406 * 57.56306 * 12 11 10 34 34 H 1.09008 * 109.46697 * 297.56761 * 12 11 10 35 35 H 0.97001 * 119.99741 * 185.01881 * 17 16 14 36 36 H 1.08994 * 117.50058 * 359.97438 * 22 13 12 37 37 H 1.09007 * 117.49949 * 145.01820 * 22 13 12 38 38 H 1.09001 * 117.50119 * 252.51177 * 23 22 13 39 39 H 1.09001 * 117.51837 * 107.47791 * 23 22 13 40 40 H 1.07998 * 120.03585 * 180.25605 * 24 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3514 1.5251 -0.0005 5 6 4.1965 0.4180 -0.0016 6 6 5.5507 0.5832 -0.0027 7 6 6.1008 1.8725 -0.0077 8 6 7.5546 2.0527 -0.0149 9 8 8.0284 3.1659 0.0770 10 6 5.2499 2.9923 -0.0007 11 8 5.7704 4.2446 -0.0002 12 6 4.8494 5.3299 0.1254 13 6 5.6203 6.6508 0.1671 14 6 6.1107 7.0743 1.5277 15 1 7.1709 7.1328 1.7254 16 6 5.2060 7.3873 2.5199 17 7 3.9180 7.4019 2.2546 18 14 5.8098 7.7905 4.2411 19 1 7.2919 7.7053 4.2783 20 1 5.3841 9.1657 4.6055 21 1 5.2335 6.8214 5.2076 22 6 5.1879 7.7521 -0.8029 23 6 6.4967 6.9957 -1.0387 24 6 3.8779 2.8086 -0.0001 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.7773 -0.5773 -0.0016 31 1 6.1996 -0.2802 -0.0039 32 1 8.2045 1.1946 -0.1020 33 1 4.2755 5.2149 1.0449 34 1 4.1714 5.3317 -0.7282 35 1 3.2867 7.6923 2.9314 36 1 4.3544 7.5356 -1.4711 37 1 5.2579 8.7835 -0.4569 38 1 7.4278 7.5293 -0.8479 39 1 6.5243 6.2814 -1.8615 40 1 3.2180 3.6635 0.0011 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000853636028.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:08 Heat of formation + Delta-G solvation = -79.413732 kcal Electronic energy + Delta-G solvation = -22982.765705 eV Core-core repulsion = 19535.758923 eV Total energy + Delta-G solvation = -3447.006782 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.64631 -40.29860 -39.44110 -38.16583 -37.10499 -34.15695 -33.06045 -31.25130 -30.97789 -28.53465 -27.36163 -25.43251 -24.46603 -23.14829 -22.98209 -21.64530 -21.05602 -19.71242 -18.43281 -17.82665 -17.36512 -17.19465 -17.07470 -16.87151 -16.37288 -15.90375 -15.73057 -15.26441 -15.04700 -14.77575 -14.56554 -14.16805 -13.78286 -13.69540 -13.48077 -13.17874 -13.05144 -12.95758 -12.83724 -12.70799 -12.40457 -12.15818 -12.01384 -11.87595 -11.50126 -11.48215 -10.87239 -10.59695 -10.48876 -10.15960 -9.64836 -9.09297 -8.19638 -6.30002 -0.16976 0.43206 1.34325 1.36808 1.49321 1.65993 2.07012 2.32118 2.37373 2.83645 3.05019 3.51898 3.53302 3.72435 4.00418 4.04779 4.07605 4.09197 4.26756 4.33031 4.37533 4.38614 4.44344 4.50687 4.60671 4.67981 4.85132 4.87186 4.90350 4.93851 5.10153 5.10865 5.21932 5.27368 5.32700 5.44676 5.49858 5.62542 5.71575 6.31014 6.34289 6.52995 6.72217 6.85592 7.36476 8.88856 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013557 B = 0.004976 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.884378 B = 5625.951182 C = 6406.645386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.041 3.959 3 O -0.334 6.334 4 C 0.199 3.801 5 C -0.258 4.258 6 C 0.029 3.971 7 C -0.294 4.294 8 C 0.378 3.622 9 O -0.503 6.503 10 C 0.197 3.803 11 O -0.293 6.293 12 C 0.117 3.883 13 C 0.013 3.987 14 C -0.507 4.507 15 H 0.046 0.954 16 C 0.026 3.974 17 N -0.908 5.908 18 Si 0.952 3.048 19 H -0.272 1.272 20 H -0.271 1.271 21 H -0.279 1.279 22 C -0.158 4.158 23 C -0.176 4.176 24 C -0.294 4.294 25 H 0.108 0.892 26 H 0.055 0.945 27 H 0.059 0.941 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.173 0.827 31 H 0.195 0.805 32 H 0.161 0.839 33 H 0.050 0.950 34 H 0.039 0.961 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 -21.154 -5.507 22.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.033 4.033 3 O -0.248 6.248 4 C 0.152 3.848 5 C -0.277 4.277 6 C 0.011 3.989 7 C -0.296 4.296 8 C 0.240 3.760 9 O -0.378 6.378 10 C 0.148 3.852 11 O -0.204 6.204 12 C 0.043 3.957 13 C 0.012 3.988 14 C -0.544 4.544 15 H 0.064 0.936 16 C -0.174 4.174 17 N -0.546 5.546 18 Si 0.777 3.223 19 H -0.197 1.197 20 H -0.196 1.196 21 H -0.205 1.205 22 C -0.195 4.195 23 C -0.213 4.213 24 C -0.314 4.314 25 H 0.127 0.873 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.191 0.809 31 H 0.212 0.788 32 H 0.176 0.824 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.660 -20.357 -5.369 21.369 hybrid contribution -0.446 0.858 0.947 1.353 sum -4.106 -19.499 -4.423 20.411 Atomic orbital electron populations 1.21845 0.91813 1.04438 1.02859 1.23264 0.96761 0.79891 1.03395 1.86052 1.18824 1.32825 1.87084 1.19068 0.83101 0.93156 0.89492 1.21216 0.94194 0.98482 1.13786 1.21235 0.94997 0.95054 0.87574 1.20803 0.97015 0.92097 1.19726 1.24469 0.88819 0.92892 0.69841 1.90669 1.78736 1.31807 1.36636 1.19715 0.91373 0.85913 0.88202 1.86304 1.37244 1.12226 1.84608 1.22303 0.90199 0.84555 0.98673 1.18836 0.98953 0.90321 0.90660 1.20727 0.92317 1.45969 0.95408 0.93614 1.25665 0.94951 0.94793 1.01992 1.70038 1.01808 1.47152 1.35622 0.85595 0.78595 0.78112 0.79990 1.19650 1.19601 1.20510 1.22731 0.96680 0.97236 1.02888 1.22732 0.94420 1.03509 1.00659 1.20466 0.94110 0.97413 1.19406 0.87325 0.92544 0.92164 0.89591 0.90065 0.80925 0.78784 0.82367 0.93190 0.94254 0.92691 0.90110 0.90596 0.90265 0.89982 0.86788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 10.28 71.98 0.74 -1.25 16 2 C 0.04 0.63 5.45 71.98 0.39 1.03 16 3 O -0.33 -9.12 10.12 -89.85 -0.91 -10.03 16 4 C 0.20 5.89 6.69 22.64 0.15 6.04 16 5 C -0.26 -5.29 8.96 22.10 0.20 -5.09 16 6 C 0.03 0.57 9.73 22.32 0.22 0.79 16 7 C -0.29 -9.11 5.88 -20.07 -0.12 -9.23 16 8 C 0.38 11.27 11.42 69.97 0.80 12.07 16 9 O -0.50 -21.90 15.99 17.72 0.28 -21.61 16 10 C 0.20 8.10 6.69 22.90 0.15 8.26 16 11 O -0.29 -14.64 8.12 -68.34 -0.56 -15.20 16 12 C 0.12 6.12 4.56 71.98 0.33 6.45 16 13 C 0.01 0.70 1.58 -52.93 -0.08 0.61 16 14 C -0.51 -30.30 8.83 25.60 0.23 -30.07 16 15 H 0.05 2.81 7.82 -2.91 -0.02 2.79 16 16 C 0.03 1.51 5.26 84.65 0.45 1.96 16 17 N -0.91 -53.52 12.42 21.45 0.27 -53.25 16 18 Si 0.95 45.84 29.54 68.60 2.03 47.87 16 19 H -0.27 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 22 C -0.16 -7.73 9.88 30.59 0.30 -7.43 16 23 C -0.18 -8.51 9.85 30.59 0.30 -8.21 16 24 C -0.29 -11.35 8.97 22.43 0.20 -11.15 16 25 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.97 7.64 -2.39 -0.02 0.95 16 29 H 0.08 0.99 7.65 -2.39 -0.02 0.98 16 30 H 0.17 2.00 6.26 -2.91 -0.02 1.98 16 31 H 0.20 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 33 H 0.05 2.86 6.76 -2.39 -0.02 2.85 16 34 H 0.04 1.92 7.32 -2.38 -0.02 1.90 16 35 H 0.26 14.68 8.32 -92.71 -0.77 13.91 16 36 H 0.08 3.63 8.05 -2.39 -0.02 3.61 16 37 H 0.08 3.80 8.14 -2.38 -0.02 3.78 16 38 H 0.08 3.77 8.14 -2.39 -0.02 3.75 16 39 H 0.08 3.71 8.14 -2.39 -0.02 3.69 16 40 H 0.11 4.89 6.32 -2.91 -0.02 4.87 16 Total: -1.00 -78.97 342.66 6.40 -72.56 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.04 Total: 14.88 kcal Atomic # 6 Polarization: -39.48 SS G_CDS: 4.25 Total: -35.22 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.27 Total: -53.25 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -1.18 Total: -46.84 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -78.97 6.40 -72.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853636028.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.851 kcal (2) G-P(sol) polarization free energy of solvation -78.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds