Wall clock time and date at job start Tue Mar 31 2020 06:35:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00229 * 2 1 4 4 C 1.53775 * 113.61671 * 149.99994 * 3 2 1 5 5 C 1.53781 * 87.07943 * 89.19793 * 4 3 2 6 6 C 1.50702 * 113.61137 * 139.98037 * 5 4 3 7 7 O 1.20826 * 120.00231 * 1.53287 * 6 5 4 8 8 O 1.34227 * 120.00040 * 181.80169 * 6 5 4 9 9 C 1.45200 * 117.00535 * 179.72316 * 8 6 5 10 10 C 1.50696 * 109.47521 * 179.97438 * 9 8 6 11 11 C 1.38634 * 119.75502 * 269.73189 * 10 9 8 12 12 C 1.37613 * 120.25387 * 179.72123 * 11 10 9 13 13 C 1.40723 * 119.73933 * 0.57136 * 12 11 10 14 14 C 1.41393 * 120.24227 * 179.68452 * 13 12 11 15 15 H 1.08002 * 120.00211 * 155.31115 * 14 13 12 16 16 C 1.39949 * 119.99833 * 335.30807 * 14 13 12 17 17 N 1.30820 * 120.00341 * 342.23203 * 16 14 13 18 18 Si 1.86804 * 119.99992 * 162.23645 * 16 14 13 19 19 H 1.48500 * 109.47277 * 94.66080 * 18 16 14 20 20 H 1.48502 * 109.46914 * 214.66538 * 18 16 14 21 21 H 1.48499 * 109.46905 * 334.66209 * 18 16 14 22 22 C 1.40716 * 119.51406 * 359.70228 * 13 12 11 23 23 C 1.37618 * 119.74083 * 359.97438 * 22 13 12 24 24 C 1.53779 * 87.17496 * 25.39418 * 5 4 3 25 25 H 1.08999 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46934 * 300.00640 * 1 2 3 27 27 H 1.08998 * 109.47161 * 60.00028 * 1 2 3 28 28 H 1.09001 * 112.84919 * 18.79644 * 3 2 1 29 29 H 1.09000 * 113.61220 * 334.65122 * 4 3 2 30 30 H 1.09000 * 113.61256 * 203.74759 * 4 3 2 31 31 H 1.08994 * 113.61508 * 270.79705 * 5 4 3 32 32 H 1.08994 * 109.47010 * 300.00699 * 9 8 6 33 33 H 1.09001 * 109.46982 * 60.00201 * 9 8 6 34 34 H 1.08005 * 119.87410 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.13380 * 180.27790 * 12 11 10 36 36 H 0.97000 * 120.00699 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.12673 * 179.97438 * 22 13 12 38 38 H 1.08005 * 119.87276 * 179.97438 * 23 22 13 39 39 H 1.08992 * 113.62157 * 89.15625 * 24 5 4 40 40 H 1.08997 * 113.60969 * 220.06492 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3756 1.3719 0.7045 5 6 4.0063 1.0351 -0.6570 6 6 5.2712 1.8028 -0.9427 7 8 5.7090 2.5732 -0.1213 8 8 5.9086 1.6349 -2.1120 9 6 7.1175 2.4114 -2.3214 10 6 7.6906 2.0929 -3.6782 11 6 8.6101 1.0641 -3.8125 12 6 9.1356 0.7607 -5.0476 13 6 8.7453 1.5072 -6.1748 14 6 9.2836 1.2089 -7.4478 15 1 8.7353 1.4705 -8.3408 16 6 10.5269 0.5748 -7.5506 17 7 11.3438 0.5670 -6.5289 18 14 11.0201 -0.2606 -9.1470 19 1 11.8212 0.6799 -9.9710 20 1 11.8307 -1.4675 -8.8442 21 1 9.8004 -0.6584 -9.8949 22 6 7.8156 2.5529 -6.0258 23 6 7.2981 2.8342 -4.7820 24 6 2.7536 1.6496 -1.3036 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.3138 2.0789 0.3236 29 1 3.5176 0.5949 1.4556 30 1 3.6305 2.3668 1.0697 31 1 4.1106 -0.0347 -0.8372 32 1 6.8808 3.4740 -2.2668 33 1 7.8476 2.1619 -1.5514 34 1 8.9121 0.4959 -2.9451 35 1 9.8484 -0.0441 -5.1507 36 1 12.2054 0.1272 -6.6000 37 1 7.5094 3.1325 -6.8841 38 1 6.5847 3.6367 -4.6651 39 1 2.8381 2.7204 -1.4885 40 1 2.3942 1.0963 -2.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859847441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:53 Heat of formation + Delta-G solvation = -97.843999 kcal Electronic energy + Delta-G solvation = -21869.759797 eV Core-core repulsion = 18421.953819 eV Total energy + Delta-G solvation = -3447.805978 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.64582 -39.08767 -37.65343 -36.30768 -35.56330 -33.85257 -30.81624 -29.36415 -27.91203 -27.04660 -26.02579 -25.89245 -23.72761 -21.41765 -21.07001 -20.03558 -19.53739 -17.79541 -17.38327 -16.76018 -16.23618 -16.08104 -15.51144 -15.36781 -15.15837 -14.42183 -14.11794 -13.84281 -13.59245 -13.05714 -12.72319 -12.66662 -12.44177 -12.20849 -12.03368 -11.98733 -11.67922 -11.51500 -11.25594 -11.12514 -10.97900 -10.70516 -10.61368 -10.60027 -10.12037 -10.09144 -9.80335 -9.66198 -9.46068 -9.20355 -7.55095 -7.44371 -6.86225 -4.45339 2.44115 2.47700 2.96405 3.01365 3.03383 3.08700 3.32210 3.44100 3.86432 4.21067 4.34745 4.50115 4.52714 4.77129 4.99700 5.07248 5.12737 5.28255 5.35014 5.48156 5.57749 5.62548 5.68714 5.73120 5.77203 5.79930 5.97331 6.11374 6.26341 6.32539 6.86619 6.89512 6.91237 6.98443 7.19194 7.27386 7.52659 7.74907 7.96727 8.01972 8.11680 8.20152 8.54748 8.79510 8.87771 10.08006 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.002702 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.360991 B =10359.005842 C =10797.436710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.368 6.368 3 C 0.063 3.937 4 C -0.119 4.119 5 C -0.104 4.104 6 C 0.464 3.536 7 O -0.522 6.522 8 O -0.348 6.348 9 C 0.134 3.866 10 C -0.234 4.234 11 C -0.076 4.076 12 C -0.170 4.170 13 C 0.119 3.881 14 C -0.457 4.457 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.230 4.230 23 C -0.064 4.064 24 C -0.139 4.139 25 H 0.087 0.913 26 H 0.042 0.958 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.283 0.717 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.095 0.905 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 -0.540 9.853 18.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.004 3.996 4 C -0.157 4.157 5 C -0.123 4.123 6 C 0.307 3.693 7 O -0.412 6.412 8 O -0.264 6.264 9 C 0.062 3.938 10 C -0.236 4.236 11 C -0.094 4.094 12 C -0.189 4.189 13 C 0.116 3.884 14 C -0.486 4.486 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.411 5.411 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.082 4.082 24 C -0.177 4.177 25 H 0.105 0.895 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.656 -0.541 10.130 17.824 hybrid contribution 0.359 -0.068 -0.677 0.769 sum -14.297 -0.609 9.452 17.150 Atomic orbital electron populations 1.22831 0.80765 1.02921 1.00089 1.87899 1.19859 1.26369 1.94527 1.23090 0.94568 0.85414 0.96501 1.23203 0.92761 1.04126 0.95586 1.22453 0.89531 1.01495 0.98863 1.23529 0.85144 0.80494 0.80119 1.90603 1.66694 1.36251 1.47653 1.86723 1.39719 1.63512 1.36427 1.21715 0.82298 0.93447 0.96299 1.18667 1.06827 1.05695 0.92384 1.20540 0.96344 0.95746 0.96788 1.21295 1.03781 1.02081 0.91784 1.17686 0.89092 0.88353 0.93274 1.19664 1.02163 1.33132 0.93603 0.90182 1.25972 0.95996 0.94064 0.98320 1.69821 1.07344 1.32348 1.31611 0.86282 0.79403 0.79304 0.81685 1.19473 1.19921 1.18304 1.20951 1.06696 1.01761 0.95587 1.20378 0.97460 0.97594 0.92801 1.23415 0.93868 1.01846 0.98575 0.89471 0.93935 0.93800 0.90091 0.89703 0.87485 0.85568 0.92180 0.92060 0.89323 0.86272 0.90652 0.88719 0.89353 0.88703 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.37 -3.68 10.63 -35.23 -0.37 -4.05 16 3 C 0.06 0.57 4.38 -25.83 -0.11 0.46 16 4 C -0.12 -1.24 7.23 -25.92 -0.19 -1.43 16 5 C -0.10 -1.29 4.19 -90.96 -0.38 -1.68 16 6 C 0.46 7.57 7.48 36.01 0.27 7.84 16 7 O -0.52 -9.49 15.66 -18.75 -0.29 -9.79 16 8 O -0.35 -6.52 10.20 -39.25 -0.40 -6.92 16 9 C 0.13 2.63 5.58 36.00 0.20 2.83 16 10 C -0.23 -5.27 5.54 -104.33 -0.58 -5.85 16 11 C -0.08 -1.79 9.67 -39.66 -0.38 -2.17 16 12 C -0.17 -4.41 8.70 -38.87 -0.34 -4.75 16 13 C 0.12 3.14 5.57 -106.82 -0.60 2.54 16 14 C -0.46 -11.92 9.05 -37.74 -0.34 -12.26 16 15 H 0.08 2.00 7.91 -52.49 -0.41 1.58 16 16 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 17 N -0.79 -19.98 10.97 55.55 0.61 -19.37 16 18 Si 0.91 18.23 29.60 -169.99 -5.03 13.19 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.97 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.23 -5.63 9.80 -38.87 -0.38 -6.02 16 23 C -0.06 -1.45 9.67 -39.66 -0.38 -1.83 16 24 C -0.14 -1.45 7.47 -25.83 -0.19 -1.65 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.08 0.58 7.87 -51.93 -0.41 0.18 16 29 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.11 1.14 7.45 -51.93 -0.39 0.75 16 31 H 0.13 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.09 1.92 8.06 -52.48 -0.42 1.49 16 35 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 36 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 37 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 38 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 39 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 343.66 15.07 5.18 5.18 Total: -1.00 -29.11 343.66 -8.44 -37.56 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -5.73 Total: 5.09 kcal Atomic # 6 Polarization: -18.49 SS G_CDS: -2.40 Total: -20.89 kcal Atomic # 7 Polarization: -19.98 SS G_CDS: 0.61 Total: -19.37 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -1.07 Total: -20.77 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.19 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -29.11 -8.44 -37.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859847441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.287 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds