Wall clock time and date at job start Tue Mar 31 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 114.00229 * 2 1 4 4 C 1.53775 * 113.61671 * 149.99994 * 3 2 1 5 5 C 1.53781 * 87.07943 * 89.19793 * 4 3 2 6 6 C 1.50702 * 113.61137 * 139.98037 * 5 4 3 7 7 O 1.20826 * 120.00231 * 1.53287 * 6 5 4 8 8 O 1.34227 * 120.00040 * 181.80169 * 6 5 4 9 9 C 1.45200 * 117.00535 * 179.72316 * 8 6 5 10 10 C 1.50696 * 109.47521 * 179.97438 * 9 8 6 11 11 C 1.38634 * 119.75502 * 269.73189 * 10 9 8 12 12 C 1.37613 * 120.25387 * 179.72123 * 11 10 9 13 13 C 1.40723 * 119.73933 * 0.57136 * 12 11 10 14 14 C 1.41393 * 120.24227 * 179.68452 * 13 12 11 15 15 H 1.08002 * 120.00211 * 155.31115 * 14 13 12 16 16 C 1.39949 * 119.99833 * 335.30807 * 14 13 12 17 17 N 1.30820 * 120.00341 * 342.23203 * 16 14 13 18 18 Si 1.86804 * 119.99992 * 162.23645 * 16 14 13 19 19 H 1.48500 * 109.47277 * 94.66080 * 18 16 14 20 20 H 1.48502 * 109.46914 * 214.66538 * 18 16 14 21 21 H 1.48499 * 109.46905 * 334.66209 * 18 16 14 22 22 C 1.40716 * 119.51406 * 359.70228 * 13 12 11 23 23 C 1.37618 * 119.74083 * 359.97438 * 22 13 12 24 24 C 1.53779 * 87.17496 * 25.39418 * 5 4 3 25 25 H 1.08999 * 109.47251 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46934 * 300.00640 * 1 2 3 27 27 H 1.08998 * 109.47161 * 60.00028 * 1 2 3 28 28 H 1.09001 * 112.84919 * 18.79644 * 3 2 1 29 29 H 1.09000 * 113.61220 * 334.65122 * 4 3 2 30 30 H 1.09000 * 113.61256 * 203.74759 * 4 3 2 31 31 H 1.08994 * 113.61508 * 270.79705 * 5 4 3 32 32 H 1.08994 * 109.47010 * 300.00699 * 9 8 6 33 33 H 1.09001 * 109.46982 * 60.00201 * 9 8 6 34 34 H 1.08005 * 119.87410 * 359.97438 * 11 10 9 35 35 H 1.07999 * 120.13380 * 180.27790 * 12 11 10 36 36 H 0.97000 * 120.00699 * 179.97438 * 17 16 14 37 37 H 1.07999 * 120.12673 * 179.97438 * 22 13 12 38 38 H 1.08005 * 119.87276 * 179.97438 * 23 22 13 39 39 H 1.08992 * 113.62157 * 89.15625 * 24 5 4 40 40 H 1.08997 * 113.60969 * 220.06492 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3756 1.3719 0.7045 5 6 4.0063 1.0351 -0.6570 6 6 5.2712 1.8028 -0.9427 7 8 5.7090 2.5732 -0.1213 8 8 5.9086 1.6349 -2.1120 9 6 7.1175 2.4114 -2.3214 10 6 7.6906 2.0929 -3.6782 11 6 8.6101 1.0641 -3.8125 12 6 9.1356 0.7607 -5.0476 13 6 8.7453 1.5072 -6.1748 14 6 9.2836 1.2089 -7.4478 15 1 8.7353 1.4705 -8.3408 16 6 10.5269 0.5748 -7.5506 17 7 11.3438 0.5670 -6.5289 18 14 11.0201 -0.2606 -9.1470 19 1 11.8212 0.6799 -9.9710 20 1 11.8307 -1.4675 -8.8442 21 1 9.8004 -0.6584 -9.8949 22 6 7.8156 2.5529 -6.0258 23 6 7.2981 2.8342 -4.7820 24 6 2.7536 1.6496 -1.3036 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.3138 2.0789 0.3236 29 1 3.5176 0.5949 1.4556 30 1 3.6305 2.3668 1.0697 31 1 4.1106 -0.0347 -0.8372 32 1 6.8808 3.4740 -2.2668 33 1 7.8476 2.1619 -1.5514 34 1 8.9121 0.4959 -2.9451 35 1 9.8484 -0.0441 -5.1507 36 1 12.2054 0.1272 -6.6000 37 1 7.5094 3.1325 -6.8841 38 1 6.5847 3.6367 -4.6651 39 1 2.8381 2.7204 -1.4885 40 1 2.3942 1.0963 -2.1713 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859847441.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:52 Heat of formation + Delta-G solvation = -112.188193 kcal Electronic energy + Delta-G solvation = -21870.381808 eV Core-core repulsion = 18421.953819 eV Total energy + Delta-G solvation = -3448.427989 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.82705 -40.13729 -39.40005 -37.57948 -36.55038 -35.69014 -32.62120 -31.25096 -29.32661 -28.07074 -26.94774 -26.73981 -25.39632 -22.97711 -22.56632 -21.82922 -20.47451 -19.28288 -18.96185 -18.00832 -17.46714 -17.17728 -17.02657 -16.35767 -16.01403 -15.91109 -15.64076 -15.43474 -14.76733 -14.48620 -14.17777 -13.93192 -13.85094 -13.51005 -13.39492 -13.15706 -13.03574 -12.92397 -12.78121 -12.41944 -12.35963 -12.22367 -11.79482 -11.69497 -11.59751 -11.48999 -11.32149 -11.20544 -11.03103 -10.49885 -9.45265 -9.34847 -8.70138 -6.40579 0.72594 1.09328 1.15929 1.37969 1.43220 1.53788 1.96292 2.19066 2.68863 2.72218 3.35038 3.51618 3.64253 3.69063 3.89456 4.07420 4.08527 4.16501 4.31700 4.46112 4.51819 4.54814 4.56462 4.62345 4.68665 4.79993 4.90168 4.97014 4.98890 4.99827 5.10833 5.12744 5.28599 5.37810 5.52155 5.63701 5.86887 6.04299 6.12771 6.27842 6.30376 6.62811 6.76016 6.87285 6.95807 8.27040 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027927 B = 0.002702 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.360991 B =10359.005842 C =10797.436710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.391 6.391 3 C 0.074 3.926 4 C -0.116 4.116 5 C -0.110 4.110 6 C 0.464 3.536 7 O -0.541 6.541 8 O -0.360 6.360 9 C 0.139 3.861 10 C -0.230 4.230 11 C -0.082 4.082 12 C -0.194 4.194 13 C 0.088 3.912 14 C -0.493 4.493 15 H 0.080 0.920 16 C 0.034 3.966 17 N -0.819 5.819 18 Si 0.985 3.015 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.245 4.245 23 C -0.065 4.065 24 C -0.137 4.137 25 H 0.095 0.905 26 H 0.056 0.944 27 H 0.051 0.949 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.291 0.709 37 H 0.104 0.896 38 H 0.119 0.881 39 H 0.099 0.901 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.806 -0.468 10.312 19.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.310 6.310 3 C 0.016 3.984 4 C -0.153 4.153 5 C -0.129 4.129 6 C 0.310 3.690 7 O -0.432 6.432 8 O -0.277 6.277 9 C 0.067 3.933 10 C -0.232 4.232 11 C -0.100 4.100 12 C -0.213 4.213 13 C 0.085 3.915 14 C -0.522 4.522 15 H 0.099 0.901 16 C -0.181 4.181 17 N -0.445 5.445 18 Si 0.805 3.195 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.264 4.264 23 C -0.083 4.083 24 C -0.175 4.175 25 H 0.114 0.886 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.125 0.875 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.147 0.853 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.136 0.864 39 H 0.118 0.882 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.296 -0.463 10.608 19.449 hybrid contribution 0.767 -0.053 -0.671 1.021 sum -15.528 -0.515 9.937 18.443 Atomic orbital electron populations 1.23032 0.79113 1.03941 1.01162 1.87870 1.21745 1.26808 1.94539 1.23006 0.94444 0.85958 0.94974 1.23212 0.93351 1.04135 0.94613 1.22698 0.88082 1.01175 1.00985 1.24293 0.85589 0.80296 0.78867 1.90592 1.67349 1.37335 1.47925 1.86696 1.39399 1.63583 1.37997 1.21534 0.82979 0.94222 0.94561 1.18983 1.05851 1.04459 0.93861 1.20773 0.96387 0.96300 0.96575 1.21268 1.04683 1.02506 0.92858 1.18050 0.90236 0.89346 0.93858 1.19925 1.03362 1.35251 0.93623 0.90140 1.26845 0.95369 0.93957 1.01969 1.69868 1.07947 1.32932 1.33709 0.85156 0.79022 0.78298 0.77042 1.18554 1.18988 1.18113 1.21177 1.06723 1.01630 0.96890 1.20702 0.97444 0.98081 0.92078 1.23471 0.92716 1.01985 0.99332 0.88627 0.92509 0.93042 0.87523 0.89273 0.87621 0.85322 0.90935 0.91733 0.87749 0.87810 0.89859 0.87768 0.86352 0.88225 0.89299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.85 113.37 1.23 1.48 16 2 O -0.39 -6.89 10.63 -148.98 -1.58 -8.48 16 3 C 0.07 1.17 4.38 31.18 0.14 1.30 16 4 C -0.12 -2.17 7.23 31.12 0.22 -1.95 16 5 C -0.11 -2.57 4.19 -11.01 -0.05 -2.62 16 6 C 0.46 14.57 7.48 71.24 0.53 15.10 16 7 O -0.54 -18.99 15.66 21.96 0.34 -18.65 16 8 O -0.36 -13.08 10.20 -51.39 -0.52 -13.61 16 9 C 0.14 5.28 5.58 71.23 0.40 5.67 16 10 C -0.23 -10.21 5.54 -19.68 -0.11 -10.32 16 11 C -0.08 -3.92 9.67 22.22 0.21 -3.71 16 12 C -0.19 -10.36 8.70 22.73 0.20 -10.16 16 13 C 0.09 4.77 5.57 -21.29 -0.12 4.65 16 14 C -0.49 -26.44 9.05 23.46 0.21 -26.23 16 15 H 0.08 4.13 7.91 -2.91 -0.02 4.10 16 16 C 0.03 1.72 5.14 85.26 0.44 2.16 16 17 N -0.82 -42.61 10.97 21.83 0.24 -42.37 16 18 Si 0.98 37.57 29.60 68.60 2.03 39.60 16 19 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 20 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.26 -9.64 7.11 99.48 0.71 -8.94 16 22 C -0.24 -12.08 9.80 22.73 0.22 -11.85 16 23 C -0.06 -2.89 9.67 22.22 0.21 -2.67 16 24 C -0.14 -2.58 7.47 31.18 0.23 -2.34 16 25 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.46 16 28 H 0.11 1.16 7.87 -2.39 -0.02 1.14 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.11 2.04 7.45 -2.39 -0.02 2.02 16 31 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 33 H 0.06 2.39 8.07 -2.39 -0.02 2.37 16 34 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 35 H 0.10 5.76 6.18 -2.91 -0.02 5.74 16 36 H 0.29 13.57 8.30 -92.71 -0.77 12.80 16 37 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.10 1.78 8.09 -2.39 -0.02 1.76 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -63.14 343.66 5.52 -57.63 By element: Atomic # 1 Polarization: 26.33 SS G_CDS: 1.03 Total: 27.36 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 3.98 Total: -41.48 kcal Atomic # 7 Polarization: -42.61 SS G_CDS: 0.24 Total: -42.37 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -1.76 Total: -40.73 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -63.14 5.52 -57.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859847441.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.561 kcal (2) G-P(sol) polarization free energy of solvation -63.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds