Wall clock time and date at job start Tue Mar 31 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47295 * 2 1 4 4 C 1.35903 * 117.00484 * 179.97438 * 3 2 1 5 5 C 1.38908 * 119.96814 * 0.02591 * 4 3 2 6 6 C 1.38291 * 120.29387 * 179.97438 * 5 4 3 7 7 C 1.37928 * 120.23472 * 0.02562 * 6 5 4 8 8 C 1.39846 * 119.93472 * 359.74023 * 7 6 5 9 9 C 1.47190 * 120.14386 * 180.27756 * 8 7 6 10 10 C 1.34910 * 120.00334 * 0.23056 * 9 8 7 11 11 C 1.46231 * 120.00050 * 179.97438 * 10 9 8 12 12 O 1.21617 * 120.00320 * 0.02562 * 11 10 9 13 13 O 1.34915 * 119.99681 * 180.02562 * 11 10 9 14 14 C 1.42904 * 116.99629 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47187 * 30.00327 * 14 13 11 16 16 C 1.52998 * 109.47205 * 270.00208 * 14 13 11 17 17 C 1.50701 * 109.46685 * 150.00622 * 14 13 11 18 18 H 1.07995 * 120.00402 * 34.99006 * 17 14 13 19 19 C 1.37884 * 119.99444 * 214.99928 * 17 14 13 20 20 N 1.31511 * 119.99567 * 184.91582 * 19 17 14 21 21 Si 1.86797 * 120.00086 * 4.90875 * 19 17 14 22 22 H 1.48503 * 109.47000 * 84.83932 * 21 19 17 23 23 H 1.48499 * 109.47131 * 204.83328 * 21 19 17 24 24 H 1.48498 * 109.47525 * 324.83865 * 21 19 17 25 25 C 1.38376 * 119.97648 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46717 * 299.99858 * 1 2 3 28 28 H 1.09004 * 109.47094 * 59.99664 * 1 2 3 29 29 H 1.09000 * 109.47166 * 240.00431 * 2 1 3 30 30 H 1.09004 * 109.47094 * 120.00336 * 2 1 3 31 31 H 1.08004 * 119.85292 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.87850 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.03158 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.99934 * 180.23247 * 9 8 7 35 35 H 1.08005 * 119.99733 * 0.02562 * 10 9 8 36 36 H 1.09001 * 109.47343 * 295.03884 * 16 14 13 37 37 H 1.09000 * 109.47057 * 55.03180 * 16 14 13 38 38 H 1.08994 * 109.47177 * 175.03833 * 16 14 13 39 39 H 0.97006 * 119.99864 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.11517 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4234 0.0005 6 6 5.5713 0.5968 0.0005 7 6 6.1109 1.8662 0.0011 8 6 5.2686 2.9825 -0.0038 9 6 5.8394 4.3392 -0.0094 10 6 7.1779 4.5079 -0.0145 11 6 7.7450 5.8557 -0.0206 12 8 7.0100 6.8247 -0.0206 13 8 9.0835 6.0243 -0.0262 14 6 9.5680 7.3687 -0.0314 15 1 8.8559 8.0135 0.4836 16 6 9.7353 7.8450 -1.4757 17 6 10.8987 7.4258 0.6736 18 1 11.5896 6.5999 0.5907 19 6 11.2340 8.5324 1.4247 20 7 12.4315 8.6254 1.9602 21 14 9.9872 9.8996 1.6815 22 1 9.1087 9.5592 2.8293 23 1 10.6990 11.1721 1.9634 24 1 9.1629 10.0545 0.4561 25 6 3.8820 2.8043 0.0011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7834 -0.5734 0.0005 32 1 6.2226 -0.2648 0.0001 33 1 7.1828 1.9979 0.0015 34 1 5.1867 5.1997 -0.0094 35 1 7.8306 3.6473 -0.0149 36 1 10.5114 7.2563 -1.9649 37 1 8.7937 7.7207 -2.0106 38 1 10.0199 8.8971 -1.4807 39 1 12.6675 9.4041 2.4883 40 1 3.2254 3.6618 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860545219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:49 Heat of formation + Delta-G solvation = -91.954527 kcal Electronic energy + Delta-G solvation = -21499.253910 eV Core-core repulsion = 18051.703319 eV Total energy + Delta-G solvation = -3447.550592 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.43516 -39.64872 -38.06043 -36.07558 -33.87517 -33.02145 -32.39636 -30.79577 -30.29877 -29.21284 -25.47965 -25.15484 -23.64395 -22.86569 -21.68793 -20.29555 -19.29656 -18.05717 -17.61409 -16.63408 -16.48150 -16.41013 -16.19223 -15.53810 -15.07791 -14.57838 -14.13434 -13.95497 -13.79546 -13.60841 -13.02915 -12.94637 -12.67668 -12.51715 -12.51101 -12.29723 -12.01892 -11.79929 -11.57194 -11.23536 -11.13240 -11.03432 -10.97086 -10.69945 -10.32788 -10.06296 -9.77104 -9.44072 -9.09099 -8.72016 -8.68704 -8.32557 -6.25575 -4.29479 0.36918 1.19730 1.87951 2.80655 3.22825 3.30810 3.36950 3.37636 3.60033 3.72208 4.28516 4.43238 4.47841 4.52635 4.67084 4.73837 4.81088 4.96098 5.00031 5.09749 5.16877 5.24582 5.34022 5.38752 5.59219 5.60660 5.66838 5.93136 5.99675 6.17267 6.19220 6.27349 6.44430 6.47511 6.50207 6.56066 6.71746 7.10133 7.17171 7.38386 7.54029 8.24220 8.66221 8.84903 9.33960 10.85767 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035181 B = 0.002535 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.698075 B =11042.344568 C =11350.996310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.317 6.317 4 C 0.126 3.874 5 C -0.203 4.203 6 C -0.080 4.080 7 C -0.139 4.139 8 C -0.026 4.026 9 C -0.040 4.040 10 C -0.159 4.159 11 C 0.480 3.520 12 O -0.526 6.526 13 O -0.335 6.335 14 C 0.177 3.823 15 H 0.046 0.954 16 C -0.154 4.154 17 C -0.518 4.518 18 H 0.085 0.915 19 C 0.081 3.919 20 N -0.883 5.883 21 Si 0.870 3.130 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.260 1.260 25 C -0.131 4.131 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.141 0.859 36 H 0.057 0.943 37 H 0.029 0.971 38 H 0.060 0.940 39 H 0.270 0.730 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.363 -18.779 -4.488 28.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.231 6.231 4 C 0.081 3.919 5 C -0.222 4.222 6 C -0.099 4.099 7 C -0.157 4.157 8 C -0.026 4.026 9 C -0.059 4.059 10 C -0.178 4.178 11 C 0.326 3.674 12 O -0.419 6.419 13 O -0.250 6.250 14 C 0.124 3.876 15 H 0.064 0.936 16 C -0.212 4.212 17 C -0.555 4.555 18 H 0.104 0.896 19 C -0.123 4.123 20 N -0.519 5.519 21 Si 0.696 3.304 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.185 1.185 25 C -0.150 4.150 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.152 0.848 34 H 0.157 0.843 35 H 0.158 0.842 36 H 0.076 0.924 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.542 -18.208 -4.374 27.797 hybrid contribution -0.445 0.614 0.248 0.798 sum -20.987 -17.593 -4.126 27.695 Atomic orbital electron populations 1.21782 0.92684 1.02871 1.03649 1.22787 0.95935 0.81964 1.01397 1.86080 1.18933 1.29312 1.88760 1.18812 0.82339 0.93910 0.96862 1.21353 0.94480 0.97948 1.08418 1.20885 0.94209 0.97330 0.97427 1.21441 1.00376 0.91744 1.02134 1.18742 0.92170 0.92774 0.98892 1.22325 0.95112 0.95308 0.93107 1.22507 0.95596 0.95502 1.04204 1.21259 0.82973 0.89728 0.73425 1.90794 1.61392 1.42689 1.46987 1.86367 1.20599 1.36608 1.81424 1.20633 0.95204 0.77176 0.94628 0.93619 1.22271 0.99575 1.01518 0.97812 1.20800 0.98367 1.05578 1.30753 0.89649 1.24922 0.95423 0.97957 0.94010 1.69858 1.19122 1.29879 1.33075 0.86946 0.81789 0.81661 0.79968 1.19597 1.20749 1.18492 1.20587 0.94122 0.95259 1.05034 0.90352 0.91441 0.91458 0.92013 0.91999 0.85500 0.85320 0.84786 0.84349 0.84179 0.92398 0.95169 0.92065 0.92017 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.05 0.35 5.46 37.16 0.20 0.55 16 3 O -0.32 -3.14 10.13 -19.44 -0.20 -3.34 16 4 C 0.13 1.32 6.68 -39.28 -0.26 1.06 16 5 C -0.20 -1.83 9.04 -39.31 -0.36 -2.18 16 6 C -0.08 -0.72 10.02 -39.68 -0.40 -1.12 16 7 C -0.14 -1.46 9.41 -39.09 -0.37 -1.83 16 8 C -0.03 -0.30 5.87 -105.08 -0.62 -0.92 16 9 C -0.04 -0.54 9.46 -37.13 -0.35 -0.89 16 10 C -0.16 -2.45 9.53 -37.55 -0.36 -2.81 16 11 C 0.48 9.95 7.83 33.94 0.27 10.22 16 12 O -0.53 -12.06 15.47 -19.35 -0.30 -12.36 16 13 O -0.33 -7.89 9.75 -41.08 -0.40 -8.29 16 14 C 0.18 4.55 2.17 -27.88 -0.06 4.49 16 15 H 0.05 1.23 4.27 -51.93 -0.22 1.01 16 16 C -0.15 -3.50 9.51 37.16 0.35 -3.15 16 17 C -0.52 -14.91 9.24 -34.44 -0.32 -15.22 16 18 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 19 C 0.08 2.34 5.47 -17.82 -0.10 2.25 16 20 N -0.88 -26.49 13.96 55.43 0.77 -25.72 16 21 Si 0.87 21.80 26.99 -169.99 -4.59 17.21 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.26 -6.38 6.82 56.52 0.39 -6.00 16 25 C -0.13 -1.48 9.73 -38.95 -0.38 -1.86 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 31 H 0.13 0.83 6.28 -52.48 -0.33 0.50 16 32 H 0.13 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.13 1.26 6.16 -52.48 -0.32 0.94 16 34 H 0.14 1.88 7.52 -52.48 -0.39 1.49 16 35 H 0.14 1.81 6.07 -52.48 -0.32 1.49 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 40 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 343.97 15.07 5.18 5.18 Total: -1.00 -32.93 343.97 -7.23 -40.15 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.34 Total: -1.05 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -2.36 Total: -11.78 kcal Atomic # 7 Polarization: -26.49 SS G_CDS: 0.77 Total: -25.72 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.90 Total: -24.00 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.59 Total: 17.21 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.93 -7.23 -40.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860545219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.803 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds