Wall clock time and date at job start Tue Mar 31 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42899 * 109.47295 * 2 1 4 4 C 1.35903 * 117.00484 * 179.97438 * 3 2 1 5 5 C 1.38908 * 119.96814 * 0.02591 * 4 3 2 6 6 C 1.38291 * 120.29387 * 179.97438 * 5 4 3 7 7 C 1.37928 * 120.23472 * 0.02562 * 6 5 4 8 8 C 1.39846 * 119.93472 * 359.74023 * 7 6 5 9 9 C 1.47190 * 120.14386 * 180.27756 * 8 7 6 10 10 C 1.34910 * 120.00334 * 0.23056 * 9 8 7 11 11 C 1.46231 * 120.00050 * 179.97438 * 10 9 8 12 12 O 1.21617 * 120.00320 * 0.02562 * 11 10 9 13 13 O 1.34915 * 119.99681 * 180.02562 * 11 10 9 14 14 C 1.42904 * 116.99629 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47187 * 30.00327 * 14 13 11 16 16 C 1.52998 * 109.47205 * 270.00208 * 14 13 11 17 17 C 1.50701 * 109.46685 * 150.00622 * 14 13 11 18 18 H 1.07995 * 120.00402 * 34.99006 * 17 14 13 19 19 C 1.37884 * 119.99444 * 214.99928 * 17 14 13 20 20 N 1.31511 * 119.99567 * 184.91582 * 19 17 14 21 21 Si 1.86797 * 120.00086 * 4.90875 * 19 17 14 22 22 H 1.48503 * 109.47000 * 84.83932 * 21 19 17 23 23 H 1.48499 * 109.47131 * 204.83328 * 21 19 17 24 24 H 1.48498 * 109.47525 * 324.83865 * 21 19 17 25 25 C 1.38376 * 119.97648 * 180.02562 * 4 3 2 26 26 H 1.08998 * 109.46822 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46717 * 299.99858 * 1 2 3 28 28 H 1.09004 * 109.47094 * 59.99664 * 1 2 3 29 29 H 1.09000 * 109.47166 * 240.00431 * 2 1 3 30 30 H 1.09004 * 109.47094 * 120.00336 * 2 1 3 31 31 H 1.08004 * 119.85292 * 359.97438 * 5 4 3 32 32 H 1.08003 * 119.87850 * 180.02562 * 6 5 4 33 33 H 1.08003 * 120.03158 * 179.97438 * 7 6 5 34 34 H 1.08005 * 119.99934 * 180.23247 * 9 8 7 35 35 H 1.08005 * 119.99733 * 0.02562 * 10 9 8 36 36 H 1.09001 * 109.47343 * 295.03884 * 16 14 13 37 37 H 1.09000 * 109.47057 * 55.03180 * 16 14 13 38 38 H 1.08994 * 109.47177 * 175.03833 * 16 14 13 39 39 H 0.97006 * 119.99864 * 179.97438 * 20 19 17 40 40 H 1.08001 * 120.11517 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4234 0.0005 6 6 5.5713 0.5968 0.0005 7 6 6.1109 1.8662 0.0011 8 6 5.2686 2.9825 -0.0038 9 6 5.8394 4.3392 -0.0094 10 6 7.1779 4.5079 -0.0145 11 6 7.7450 5.8557 -0.0206 12 8 7.0100 6.8247 -0.0206 13 8 9.0835 6.0243 -0.0262 14 6 9.5680 7.3687 -0.0314 15 1 8.8559 8.0135 0.4836 16 6 9.7353 7.8450 -1.4757 17 6 10.8987 7.4258 0.6736 18 1 11.5896 6.5999 0.5907 19 6 11.2340 8.5324 1.4247 20 7 12.4315 8.6254 1.9602 21 14 9.9872 9.8996 1.6815 22 1 9.1087 9.5592 2.8293 23 1 10.6990 11.1721 1.9634 24 1 9.1629 10.0545 0.4561 25 6 3.8820 2.8043 0.0011 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 3.7834 -0.5734 0.0005 32 1 6.2226 -0.2648 0.0001 33 1 7.1828 1.9979 0.0015 34 1 5.1867 5.1997 -0.0094 35 1 7.8306 3.6473 -0.0149 36 1 10.5114 7.2563 -1.9649 37 1 8.7937 7.7207 -2.0106 38 1 10.0199 8.8971 -1.4807 39 1 12.6675 9.4041 2.4883 40 1 3.2254 3.6618 0.0015 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860545219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:48 Heat of formation + Delta-G solvation = -110.511870 kcal Electronic energy + Delta-G solvation = -21500.058617 eV Core-core repulsion = 18051.703319 eV Total energy + Delta-G solvation = -3448.355298 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42896 -41.08553 -38.86954 -37.79873 -35.17097 -34.92091 -32.93010 -32.61059 -31.26764 -30.08737 -27.49035 -26.29646 -24.51670 -23.64723 -22.94736 -21.74265 -20.62365 -19.42246 -19.01489 -18.32911 -17.70454 -17.16615 -17.04274 -16.87628 -16.54741 -16.14302 -15.32921 -14.96725 -14.69586 -14.56523 -14.41412 -14.34247 -14.27295 -13.70564 -13.42369 -13.29531 -13.19417 -13.04686 -12.93959 -12.73158 -12.60545 -12.37869 -11.98203 -11.79959 -11.78029 -11.56358 -11.39886 -11.24074 -11.15078 -10.87270 -9.58193 -9.15456 -8.47217 -6.56817 -0.66069 0.43232 0.81011 1.25072 1.28420 1.39249 1.95722 2.01026 2.19666 2.25543 2.83076 2.90713 3.60481 3.77560 3.94097 4.00320 4.07390 4.15006 4.16129 4.23102 4.30621 4.37993 4.39649 4.47662 4.57518 4.61145 4.82096 4.84805 4.87999 4.95032 5.04043 5.17528 5.20301 5.30130 5.30540 5.39740 5.41739 5.57255 5.63896 5.72603 6.14886 6.42921 6.51321 6.90807 7.11849 8.68073 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.035181 B = 0.002535 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.698075 B =11042.344568 C =11350.996310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 O -0.335 6.335 4 C 0.114 3.886 5 C -0.192 4.192 6 C -0.081 4.081 7 C -0.141 4.141 8 C -0.048 4.048 9 C -0.001 4.001 10 C -0.187 4.187 11 C 0.478 3.522 12 O -0.555 6.555 13 O -0.349 6.349 14 C 0.178 3.822 15 H 0.035 0.965 16 C -0.148 4.148 17 C -0.531 4.531 18 H 0.049 0.951 19 C 0.034 3.966 20 N -0.922 5.922 21 Si 0.929 3.071 22 H -0.270 1.270 23 H -0.265 1.265 24 H -0.252 1.252 25 C -0.141 4.141 26 H 0.101 0.899 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.155 0.845 32 H 0.159 0.841 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.164 0.836 36 H 0.062 0.938 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.276 0.724 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.457 -20.601 -4.900 30.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.069 3.931 5 C -0.210 4.210 6 C -0.098 4.098 7 C -0.159 4.159 8 C -0.048 4.048 9 C -0.020 4.020 10 C -0.205 4.205 11 C 0.327 3.673 12 O -0.450 6.450 13 O -0.265 6.265 14 C 0.124 3.876 15 H 0.053 0.947 16 C -0.206 4.206 17 C -0.568 4.568 18 H 0.067 0.933 19 C -0.167 4.167 20 N -0.560 5.560 21 Si 0.752 3.248 22 H -0.195 1.195 23 H -0.190 1.190 24 H -0.176 1.176 25 C -0.160 4.160 26 H 0.119 0.881 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.173 0.827 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.152 0.848 35 H 0.181 0.819 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -22.645 -20.050 -4.796 30.623 hybrid contribution 0.037 0.930 0.367 1.001 sum -22.607 -19.120 -4.429 29.938 Atomic orbital electron populations 1.21819 0.91791 1.04181 1.03056 1.23095 0.96741 0.80607 1.02551 1.86072 1.18593 1.31577 1.88704 1.18945 0.83037 0.94041 0.97107 1.21726 0.94406 0.98806 1.06106 1.21247 0.94691 0.97626 0.96274 1.21677 1.00830 0.92053 1.01377 1.18649 0.92633 0.92074 1.01490 1.22445 0.94271 0.96409 0.88877 1.22329 0.96417 0.93208 1.08573 1.22054 0.81551 0.91520 0.72192 1.90765 1.61406 1.44082 1.48735 1.86312 1.22716 1.35173 1.82254 1.20448 0.93286 0.78130 0.95781 0.94685 1.22175 1.00668 1.01642 0.96112 1.20926 0.99515 1.04768 1.31599 0.93272 1.25671 0.97118 1.00295 0.93635 1.69958 1.20841 1.31124 1.34095 0.86015 0.79509 0.79205 0.80093 1.19519 1.18974 1.17560 1.20699 0.94044 0.96127 1.05092 0.88078 0.92079 0.92020 0.90728 0.90811 0.82745 0.82386 0.83878 0.84839 0.81854 0.91871 0.93479 0.91748 0.91446 0.84589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.28 71.98 0.74 -0.41 16 2 C 0.04 0.45 5.46 71.98 0.39 0.84 16 3 O -0.33 -6.05 10.13 -92.46 -0.94 -6.99 16 4 C 0.11 2.16 6.68 22.46 0.15 2.31 16 5 C -0.19 -2.80 9.04 22.44 0.20 -2.60 16 6 C -0.08 -1.17 10.02 22.21 0.22 -0.95 16 7 C -0.14 -2.64 9.41 22.59 0.21 -2.43 16 8 C -0.05 -1.07 5.87 -20.16 -0.12 -1.19 16 9 C 0.00 -0.04 9.46 23.86 0.23 0.19 16 10 C -0.19 -5.65 9.53 23.58 0.22 -5.43 16 11 C 0.48 19.93 7.83 69.90 0.55 20.47 16 12 O -0.56 -25.60 15.47 19.45 0.30 -25.30 16 13 O -0.35 -16.69 9.75 -58.30 -0.57 -17.26 16 14 C 0.18 9.21 2.17 29.85 0.06 9.28 16 15 H 0.04 1.89 4.27 -2.39 -0.01 1.88 16 16 C -0.15 -6.68 9.51 71.98 0.68 -5.99 16 17 C -0.53 -31.41 9.24 25.60 0.24 -31.17 16 18 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 19 C 0.03 1.98 5.47 84.66 0.46 2.44 16 20 N -0.92 -56.44 13.96 21.45 0.30 -56.14 16 21 Si 0.93 45.03 26.99 68.60 1.85 46.88 16 22 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 24 H -0.25 -11.76 6.82 99.48 0.68 -11.09 16 25 C -0.14 -3.01 9.73 22.68 0.22 -2.78 16 26 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.56 7.66 -2.39 -0.02 0.54 16 30 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 31 H 0.16 1.35 6.28 -2.91 -0.02 1.33 16 32 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 33 H 0.14 2.36 6.16 -2.91 -0.02 2.34 16 34 H 0.13 3.60 7.52 -2.91 -0.02 3.58 16 35 H 0.16 4.05 6.07 -2.91 -0.02 4.03 16 36 H 0.06 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 38 H 0.06 2.81 8.14 -2.39 -0.02 2.79 16 39 H 0.28 15.58 8.31 -92.70 -0.77 14.81 16 40 H 0.14 2.75 8.06 -2.91 -0.02 2.72 16 Total: -1.00 -72.33 343.97 6.43 -65.90 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.01 Total: 10.34 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: 4.47 Total: -17.43 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: 0.30 Total: -56.14 kcal Atomic # 8 Polarization: -48.35 SS G_CDS: -1.20 Total: -49.55 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 1.85 Total: 46.88 kcal Total: -72.33 6.43 -65.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860545219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.609 kcal (2) G-P(sol) polarization free energy of solvation -72.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds