Wall clock time and date at job start Tue Mar 31 2020 06:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47261 * 2 1 4 4 C 1.35903 * 117.00075 * 179.97438 * 3 2 1 5 5 C 1.38900 * 119.97173 * 0.02562 * 4 3 2 6 6 C 1.38296 * 120.29309 * 180.02562 * 5 4 3 7 7 C 1.37930 * 120.23544 * 0.02562 * 6 5 4 8 8 C 1.39850 * 119.93442 * 359.97438 * 7 6 5 9 9 C 1.47187 * 120.14665 * 179.97438 * 8 7 6 10 10 C 1.34909 * 120.00271 * 136.37201 * 9 8 7 11 11 C 1.46233 * 120.00122 * 349.03922 * 10 9 8 12 12 O 1.21628 * 119.99752 * 353.21637 * 11 10 9 13 13 O 1.34905 * 120.00406 * 173.21639 * 11 10 9 14 14 C 1.42892 * 117.00336 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47132 * 330.00131 * 14 13 11 16 16 C 1.53003 * 109.47060 * 90.00499 * 14 13 11 17 17 C 1.50706 * 109.47206 * 210.00106 * 14 13 11 18 18 H 1.07997 * 119.99669 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00137 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99848 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00016 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47341 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47368 * 120.00306 * 21 19 17 24 24 H 1.48510 * 109.47014 * 239.99827 * 21 19 17 25 25 C 1.38380 * 119.96891 * 180.28007 * 4 3 2 26 26 H 1.09001 * 109.47226 * 59.99411 * 1 2 3 27 27 H 1.08997 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46910 * 299.99438 * 1 2 3 29 29 H 1.09002 * 109.47399 * 240.00765 * 2 1 3 30 30 H 1.09003 * 109.47697 * 120.00353 * 2 1 3 31 31 H 1.08002 * 119.85370 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.88053 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.03326 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.99221 * 316.37603 * 9 8 7 35 35 H 1.08000 * 119.99766 * 169.04059 * 10 9 8 36 36 H 1.09007 * 109.46646 * 299.99300 * 16 14 13 37 37 H 1.09003 * 109.47093 * 180.02562 * 16 14 13 38 38 H 1.08996 * 109.47448 * 59.99826 * 16 14 13 39 39 H 0.96998 * 120.00192 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.11710 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4234 0.0005 6 6 5.5713 0.5969 0.0016 7 6 6.1109 1.8663 0.0032 8 6 5.2685 2.9826 0.0033 9 6 5.8393 4.3393 0.0056 10 6 5.3225 5.2900 -0.8002 11 6 4.3642 4.9235 -1.8421 12 8 4.1261 3.7516 -2.0644 13 8 3.7441 5.8851 -2.5568 14 6 2.8198 5.4551 -3.5581 15 1 3.1306 4.4855 -3.9471 16 6 1.4231 5.3350 -2.9452 17 6 2.7911 6.4607 -4.6803 18 1 3.4158 7.3404 -4.6331 19 6 1.9664 6.2582 -5.7665 20 7 1.2045 5.1877 -5.8232 21 14 1.9314 7.5042 -7.1577 22 1 2.8734 8.6114 -6.8545 23 1 2.3351 6.8432 -8.4247 24 1 0.5571 8.0490 -7.2998 25 6 3.8819 2.8044 0.0064 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5139 0.8899 31 1 3.7834 -0.5734 0.0005 32 1 6.2226 -0.2647 0.0012 33 1 7.1828 1.9980 0.0037 34 1 6.6718 4.5737 0.6524 35 1 5.6167 6.3216 -0.6758 36 1 1.4439 4.6076 -2.1336 37 1 0.7182 5.0066 -3.7089 38 1 1.1123 6.3046 -2.5562 39 1 0.6246 5.0450 -6.5875 40 1 3.2253 3.6618 0.0110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000860545221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:54 Heat of formation + Delta-G solvation = -77.838015 kcal Electronic energy + Delta-G solvation = -23018.563595 eV Core-core repulsion = 19571.625141 eV Total energy + Delta-G solvation = -3446.938454 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.15265 -39.35313 -37.54826 -35.80648 -33.46612 -33.16849 -31.93692 -30.00329 -29.41231 -29.04524 -25.30072 -24.72744 -23.42318 -22.35173 -21.51551 -20.40144 -18.99301 -17.97648 -16.71176 -16.49633 -16.05508 -15.98923 -15.66826 -15.18917 -14.78606 -14.44225 -14.06732 -13.70196 -13.34486 -13.13398 -13.02539 -12.65911 -12.51535 -12.09275 -11.93342 -11.77314 -11.58715 -11.41918 -11.19622 -11.04273 -10.79454 -10.76062 -10.63342 -10.31087 -10.23453 -9.86684 -9.53741 -9.41499 -8.79911 -8.43664 -8.03025 -7.90224 -6.13057 -4.19705 0.82878 1.72231 1.99667 3.26292 3.32794 3.34266 3.38105 3.66717 3.85828 4.01609 4.39023 4.78684 4.88803 4.91169 5.09712 5.12950 5.19570 5.23200 5.30657 5.41630 5.47892 5.65214 5.71388 5.77607 5.82263 6.03680 6.08982 6.25091 6.37295 6.50892 6.58867 6.72163 6.73559 6.94663 6.97838 7.00812 7.25473 7.64112 7.66456 7.80896 8.01511 8.21506 8.72457 8.98265 9.45951 10.94376 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.004616 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.467891 B = 6063.838792 C = 7331.565012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.057 3.943 3 O -0.314 6.314 4 C 0.122 3.878 5 C -0.200 4.200 6 C -0.096 4.096 7 C -0.138 4.138 8 C -0.033 4.033 9 C -0.040 4.040 10 C -0.166 4.166 11 C 0.469 3.531 12 O -0.501 6.501 13 O -0.346 6.346 14 C 0.212 3.788 15 H 0.044 0.956 16 C -0.154 4.154 17 C -0.518 4.518 18 H 0.068 0.932 19 C 0.062 3.938 20 N -0.889 5.889 21 Si 0.910 3.090 22 H -0.270 1.270 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.070 4.070 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.016 0.984 37 H 0.097 0.903 38 H 0.034 0.966 39 H 0.264 0.736 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.672 -8.735 14.345 17.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.228 6.228 4 C 0.077 3.923 5 C -0.219 4.219 6 C -0.115 4.115 7 C -0.156 4.156 8 C -0.033 4.033 9 C -0.059 4.059 10 C -0.185 4.185 11 C 0.314 3.686 12 O -0.392 6.392 13 O -0.262 6.262 14 C 0.159 3.841 15 H 0.062 0.938 16 C -0.211 4.211 17 C -0.557 4.557 18 H 0.086 0.914 19 C -0.140 4.140 20 N -0.527 5.527 21 Si 0.737 3.263 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.089 4.089 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.139 0.861 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.035 0.965 37 H 0.115 0.885 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.250 -9.008 14.105 17.541 hybrid contribution -0.100 0.276 -1.000 1.043 sum 5.150 -8.732 13.105 16.569 Atomic orbital electron populations 1.21772 0.92894 1.02528 1.03787 1.22716 0.95851 0.82368 1.00929 1.86110 1.19096 1.28764 1.88838 1.18711 0.82233 0.93855 0.97518 1.21216 0.94449 0.97607 1.08609 1.20670 0.94123 0.96941 0.99722 1.21014 0.99024 0.91745 1.03809 1.18618 0.92261 0.92896 0.99527 1.22371 0.96337 0.91090 0.96066 1.22590 0.98968 1.00645 0.96269 1.21310 0.80126 0.84718 0.82410 1.90908 1.62341 1.19501 1.66433 1.86178 1.53805 1.38749 1.47511 1.20192 0.83473 0.97408 0.83057 0.93808 1.22162 1.00605 0.98459 0.99915 1.21094 1.24858 1.07595 1.02113 0.91361 1.24890 0.94934 0.95967 0.98231 1.69922 1.25700 1.26534 1.30535 0.86250 0.77984 0.80876 0.81205 1.19480 1.20800 1.20750 1.20349 0.93846 0.94803 0.99879 0.91148 0.90634 0.91659 0.92181 0.92503 0.86038 0.86147 0.86068 0.83939 0.83935 0.96505 0.88469 0.94646 0.92572 0.85994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 37.16 0.38 -1.21 16 2 C 0.06 0.69 5.46 37.16 0.20 0.90 16 3 O -0.31 -5.28 10.13 -19.44 -0.20 -5.48 16 4 C 0.12 2.07 6.68 -39.28 -0.26 1.80 16 5 C -0.20 -2.85 9.04 -39.32 -0.36 -3.21 16 6 C -0.10 -1.26 10.02 -39.67 -0.40 -1.66 16 7 C -0.14 -1.86 9.79 -39.09 -0.38 -2.24 16 8 C -0.03 -0.51 4.53 -105.08 -0.48 -0.98 16 9 C -0.04 -0.53 9.81 -37.13 -0.36 -0.89 16 10 C -0.17 -2.57 10.04 -37.55 -0.38 -2.95 16 11 C 0.47 10.09 6.89 33.94 0.23 10.32 16 12 O -0.50 -11.87 11.39 -19.36 -0.22 -12.09 16 13 O -0.35 -8.55 9.75 -41.05 -0.40 -8.95 16 14 C 0.21 5.88 2.51 -27.88 -0.07 5.81 16 15 H 0.04 1.35 7.11 -51.93 -0.37 0.98 16 16 C -0.15 -4.05 9.31 37.16 0.35 -3.71 16 17 C -0.52 -14.98 8.89 -34.44 -0.31 -15.28 16 18 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 19 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 20 N -0.89 -25.92 11.32 55.43 0.63 -25.29 16 21 Si 0.91 21.51 29.54 -169.99 -5.02 16.49 16 22 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.07 -1.24 6.54 -38.95 -0.25 -1.50 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 30 H 0.06 0.57 7.66 -51.93 -0.40 0.18 16 31 H 0.12 1.42 6.28 -52.49 -0.33 1.09 16 32 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 33 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 34 H 0.14 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.02 0.41 8.14 -51.92 -0.42 -0.02 16 37 H 0.10 2.73 6.07 -51.93 -0.32 2.42 16 38 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.12 2.33 7.03 -52.49 -0.37 1.96 16 LS Contribution 339.40 15.07 5.11 5.11 Total: -1.00 -33.30 339.40 -7.80 -41.10 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -5.53 Total: 2.27 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.18 Total: -13.17 kcal Atomic # 7 Polarization: -25.92 SS G_CDS: 0.63 Total: -25.29 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.82 Total: -26.52 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.30 -7.80 -41.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860545221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.737 kcal (2) G-P(sol) polarization free energy of solvation -33.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds