Wall clock time and date at job start Tue Mar 31 2020 06:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42906 * 109.47261 * 2 1 4 4 C 1.35903 * 117.00075 * 179.97438 * 3 2 1 5 5 C 1.38900 * 119.97173 * 0.02562 * 4 3 2 6 6 C 1.38296 * 120.29309 * 180.02562 * 5 4 3 7 7 C 1.37930 * 120.23544 * 0.02562 * 6 5 4 8 8 C 1.39850 * 119.93442 * 359.97438 * 7 6 5 9 9 C 1.47187 * 120.14665 * 179.97438 * 8 7 6 10 10 C 1.34909 * 120.00271 * 136.37201 * 9 8 7 11 11 C 1.46233 * 120.00122 * 349.03922 * 10 9 8 12 12 O 1.21628 * 119.99752 * 353.21637 * 11 10 9 13 13 O 1.34905 * 120.00406 * 173.21639 * 11 10 9 14 14 C 1.42892 * 117.00336 * 180.02562 * 13 11 10 15 15 H 1.08996 * 109.47132 * 330.00131 * 14 13 11 16 16 C 1.53003 * 109.47060 * 90.00499 * 14 13 11 17 17 C 1.50706 * 109.47206 * 210.00106 * 14 13 11 18 18 H 1.07997 * 119.99669 * 359.97438 * 17 14 13 19 19 C 1.37878 * 120.00137 * 180.02562 * 17 14 13 20 20 N 1.31514 * 119.99848 * 0.02562 * 19 17 14 21 21 Si 1.86793 * 120.00016 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47341 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47368 * 120.00306 * 21 19 17 24 24 H 1.48510 * 109.47014 * 239.99827 * 21 19 17 25 25 C 1.38380 * 119.96891 * 180.28007 * 4 3 2 26 26 H 1.09001 * 109.47226 * 59.99411 * 1 2 3 27 27 H 1.08997 * 109.47136 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46910 * 299.99438 * 1 2 3 29 29 H 1.09002 * 109.47399 * 240.00765 * 2 1 3 30 30 H 1.09003 * 109.47697 * 120.00353 * 2 1 3 31 31 H 1.08002 * 119.85370 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.88053 * 180.02562 * 6 5 4 33 33 H 1.08001 * 120.03326 * 180.02562 * 7 6 5 34 34 H 1.08000 * 119.99221 * 316.37603 * 9 8 7 35 35 H 1.08000 * 119.99766 * 169.04059 * 10 9 8 36 36 H 1.09007 * 109.46646 * 299.99300 * 16 14 13 37 37 H 1.09003 * 109.47093 * 180.02562 * 16 14 13 38 38 H 1.08996 * 109.47448 * 59.99826 * 16 14 13 39 39 H 0.96998 * 120.00192 * 180.02562 * 20 19 17 40 40 H 1.08000 * 120.11710 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5254 0.0005 5 6 4.1993 0.4234 0.0005 6 6 5.5713 0.5969 0.0016 7 6 6.1109 1.8663 0.0032 8 6 5.2685 2.9826 0.0033 9 6 5.8393 4.3393 0.0056 10 6 5.3225 5.2900 -0.8002 11 6 4.3642 4.9235 -1.8421 12 8 4.1261 3.7516 -2.0644 13 8 3.7441 5.8851 -2.5568 14 6 2.8198 5.4551 -3.5581 15 1 3.1306 4.4855 -3.9471 16 6 1.4231 5.3350 -2.9452 17 6 2.7911 6.4607 -4.6803 18 1 3.4158 7.3404 -4.6331 19 6 1.9664 6.2582 -5.7665 20 7 1.2045 5.1877 -5.8232 21 14 1.9314 7.5042 -7.1577 22 1 2.8734 8.6114 -6.8545 23 1 2.3351 6.8432 -8.4247 24 1 0.5571 8.0490 -7.2998 25 6 3.8819 2.8044 0.0064 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8934 -0.5137 -0.8900 30 1 1.8935 -0.5139 0.8899 31 1 3.7834 -0.5734 0.0005 32 1 6.2226 -0.2647 0.0012 33 1 7.1828 1.9980 0.0037 34 1 6.6718 4.5737 0.6524 35 1 5.6167 6.3216 -0.6758 36 1 1.4439 4.6076 -2.1336 37 1 0.7182 5.0066 -3.7089 38 1 1.1123 6.3046 -2.5562 39 1 0.6246 5.0450 -6.5875 40 1 3.2253 3.6618 0.0110 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000860545221.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:53 Heat of formation + Delta-G solvation = -97.203351 kcal Electronic energy + Delta-G solvation = -23019.403339 eV Core-core repulsion = 19571.625141 eV Total energy + Delta-G solvation = -3447.778198 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56067 -40.81789 -38.82340 -37.52484 -35.30499 -34.71260 -32.91848 -31.81749 -30.77149 -30.31456 -27.50408 -26.08219 -24.61804 -23.60319 -22.92282 -22.04869 -20.43580 -19.38759 -18.64029 -18.18446 -17.25103 -17.10145 -17.03174 -16.78566 -16.50133 -16.18375 -15.26372 -15.10006 -14.61656 -14.43202 -14.17873 -14.14769 -14.03893 -13.56641 -13.40933 -13.21982 -13.06962 -12.93560 -12.81883 -12.61208 -12.52213 -12.41810 -12.15102 -11.84104 -11.67633 -11.51848 -11.30548 -10.94939 -10.84364 -10.60791 -9.24665 -9.08326 -8.29689 -6.47271 -0.38294 0.57395 0.80914 1.39766 1.41211 1.55423 2.09328 2.18076 2.32633 2.47031 2.87578 3.00559 3.70868 3.86693 3.99510 4.05111 4.08864 4.14620 4.30413 4.33981 4.41290 4.47827 4.52956 4.64320 4.74797 4.78586 4.82127 4.87125 4.96174 5.07485 5.10626 5.14723 5.27079 5.40064 5.46857 5.50331 5.57743 5.63731 5.89522 5.92621 6.13112 6.52016 6.59770 7.05294 7.27203 8.78497 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.015652 B = 0.004616 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.467891 B = 6063.838792 C = 7331.565012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.047 3.953 3 O -0.348 6.348 4 C 0.094 3.906 5 C -0.203 4.203 6 C -0.095 4.095 7 C -0.134 4.134 8 C -0.057 4.057 9 C 0.002 3.998 10 C -0.195 4.195 11 C 0.458 3.542 12 O -0.531 6.531 13 O -0.359 6.359 14 C 0.219 3.781 15 H 0.000 1.000 16 C -0.138 4.138 17 C -0.548 4.548 18 H 0.067 0.933 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.271 1.271 25 C -0.103 4.103 26 H 0.047 0.953 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.159 0.841 34 H 0.203 0.797 35 H 0.175 0.825 36 H 0.015 0.985 37 H 0.078 0.922 38 H 0.043 0.957 39 H 0.270 0.730 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.892 -9.085 15.130 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.263 6.263 4 C 0.050 3.950 5 C -0.222 4.222 6 C -0.112 4.112 7 C -0.152 4.152 8 C -0.057 4.057 9 C -0.015 4.015 10 C -0.213 4.213 11 C 0.306 3.694 12 O -0.424 6.424 13 O -0.276 6.276 14 C 0.165 3.835 15 H 0.018 0.982 16 C -0.195 4.195 17 C -0.585 4.585 18 H 0.086 0.914 19 C -0.185 4.185 20 N -0.557 5.557 21 Si 0.808 3.192 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.196 1.196 25 C -0.122 4.122 26 H 0.066 0.934 27 H 0.126 0.874 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.177 0.823 33 H 0.177 0.823 34 H 0.220 0.780 35 H 0.192 0.808 36 H 0.034 0.966 37 H 0.096 0.904 38 H 0.062 0.938 39 H 0.079 0.921 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.479 -9.367 14.916 19.135 hybrid contribution -0.763 0.179 -1.135 1.379 sum 6.715 -9.188 13.782 17.873 Atomic orbital electron populations 1.21819 0.91870 1.04300 1.02713 1.23029 0.96765 0.80825 1.02080 1.86072 1.19600 1.31504 1.89138 1.19041 0.82731 0.94619 0.98633 1.21563 0.95068 0.97811 1.07730 1.21207 0.93978 0.98313 0.97724 1.21489 1.00638 0.91133 1.01952 1.19031 0.91636 0.95060 0.99944 1.23003 0.95487 0.88983 0.94076 1.22646 0.99135 1.03052 0.96480 1.22500 0.80169 0.83960 0.82784 1.90896 1.63531 1.20544 1.67412 1.86157 1.53988 1.39967 1.47495 1.19806 0.84353 0.95260 0.84056 0.98200 1.21958 0.99880 0.98639 0.99063 1.21369 1.25871 1.07948 1.03335 0.91443 1.25895 0.93935 0.97981 1.00730 1.70049 1.25955 1.28215 1.31500 0.85103 0.78552 0.78200 0.77347 1.18548 1.20002 1.19587 1.20358 0.94962 0.94339 1.02542 0.93357 0.87372 0.91562 0.92143 0.89984 0.83701 0.82309 0.82320 0.78040 0.80758 0.96623 0.90351 0.93818 0.92061 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 10.28 71.98 0.74 -2.45 16 2 C 0.05 1.17 5.46 71.98 0.39 1.57 16 3 O -0.35 -12.45 10.13 -92.46 -0.94 -13.39 16 4 C 0.09 3.32 6.68 22.46 0.15 3.47 16 5 C -0.20 -5.57 9.04 22.44 0.20 -5.37 16 6 C -0.09 -2.18 10.02 22.21 0.22 -1.96 16 7 C -0.13 -3.21 9.79 22.59 0.22 -2.99 16 8 C -0.06 -1.68 4.53 -20.16 -0.09 -1.78 16 9 C 0.00 0.05 9.81 23.86 0.23 0.28 16 10 C -0.19 -5.87 10.04 23.58 0.24 -5.64 16 11 C 0.46 20.56 6.89 69.90 0.48 21.04 16 12 O -0.53 -26.71 11.39 19.42 0.22 -26.49 16 13 O -0.36 -18.62 9.75 -58.20 -0.57 -19.19 16 14 C 0.22 12.87 2.51 29.85 0.07 12.95 16 15 H 0.00 0.01 7.11 -2.39 -0.02 0.00 16 16 C -0.14 -7.69 9.31 71.98 0.67 -7.02 16 17 C -0.55 -32.65 8.89 25.60 0.23 -32.42 16 18 H 0.07 3.92 7.81 -2.91 -0.02 3.90 16 19 C 0.01 0.80 5.30 84.65 0.45 1.25 16 20 N -0.92 -55.11 11.32 21.45 0.24 -54.87 16 21 Si 0.99 44.29 29.54 68.60 2.03 46.31 16 22 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 C -0.10 -3.83 6.54 22.68 0.15 -3.68 16 26 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.45 7.66 -2.39 -0.02 1.43 16 30 H 0.08 1.57 7.66 -2.39 -0.02 1.56 16 31 H 0.15 3.13 6.28 -2.91 -0.02 3.11 16 32 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 34 H 0.20 2.36 8.06 -2.91 -0.02 2.33 16 35 H 0.18 4.03 8.06 -2.91 -0.02 4.01 16 36 H 0.01 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.08 4.66 6.07 -2.39 -0.01 4.64 16 38 H 0.04 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 40 H 0.09 3.74 7.03 -2.91 -0.02 3.72 16 Total: -1.00 -78.51 339.40 6.38 -72.14 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: 1.03 Total: 18.23 kcal Atomic # 6 Polarization: -27.10 SS G_CDS: 4.36 Total: -22.74 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.24 Total: -54.87 kcal Atomic # 8 Polarization: -57.78 SS G_CDS: -1.28 Total: -59.07 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -78.51 6.38 -72.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000860545221.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.068 kcal (2) G-P(sol) polarization free energy of solvation -78.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds