Wall clock time and date at job start Tue Mar 31 2020 06:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.90315 * 2 1 4 4 O 1.43241 * 109.83003 * 239.06524 * 2 1 3 5 5 C 1.43644 * 109.97357 * 242.20136 * 4 2 1 6 6 C 1.54945 * 105.13479 * 335.56988 * 5 4 2 7 7 C 1.54385 * 109.83265 * 120.93614 * 2 1 3 8 8 H 1.09003 * 111.01746 * 22.59908 * 7 2 1 9 9 C 1.52997 * 110.84836 * 259.06102 * 7 2 1 10 10 O 1.45198 * 109.47123 * 180.71335 * 9 7 2 11 11 C 1.34808 * 116.99724 * 179.97438 * 10 9 7 12 12 O 1.21531 * 120.00339 * 0.02562 * 11 10 9 13 13 C 1.47288 * 119.99604 * 180.27086 * 11 10 9 14 14 C 1.39291 * 120.29182 * 353.94429 * 13 11 10 15 15 C 1.38203 * 120.08544 * 179.69734 * 14 13 11 16 16 C 1.38835 * 120.68638 * 0.59870 * 15 14 13 17 17 C 1.37604 * 120.57898 * 359.67560 * 16 15 14 18 18 C 1.40705 * 119.88615 * 0.02671 * 17 16 15 19 19 C 1.40866 * 120.32936 * 180.02562 * 18 17 16 20 20 H 1.08006 * 120.00070 * 145.82653 * 19 18 17 21 21 C 1.40294 * 119.99809 * 325.82599 * 19 18 17 22 22 N 1.30607 * 120.00335 * 350.77047 * 21 19 18 23 23 Si 1.86807 * 119.99835 * 170.77129 * 21 19 18 24 24 H 1.48505 * 109.47066 * 359.97438 * 23 21 19 25 25 H 1.48491 * 109.47014 * 119.99943 * 23 21 19 26 26 H 1.48493 * 109.46834 * 239.99939 * 23 21 19 27 27 H 1.09001 * 109.46611 * 299.06847 * 1 2 3 28 28 H 1.09002 * 109.47013 * 59.06177 * 1 2 3 29 29 H 1.08997 * 109.47244 * 179.06967 * 1 2 3 30 30 H 1.09000 * 110.30631 * 216.65399 * 5 4 2 31 31 H 1.09000 * 110.30798 * 94.48888 * 5 4 2 32 32 H 1.08996 * 111.12558 * 278.52308 * 6 5 4 33 33 H 1.08998 * 111.15953 * 154.37863 * 6 5 4 34 34 H 1.08993 * 109.47557 * 60.71025 * 9 7 2 35 35 H 1.09003 * 109.46828 * 300.71099 * 9 7 2 36 36 H 1.08004 * 119.95327 * 359.97298 * 14 13 11 37 37 H 1.08002 * 119.65388 * 180.30193 * 15 14 13 38 38 H 1.07995 * 119.71064 * 179.69692 * 16 15 14 39 39 H 1.07996 * 120.05658 * 180.02562 * 17 16 15 40 40 H 0.97000 * 120.00274 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9010 1.0249 0.0000 4 8 2.0159 -0.6927 -1.1558 5 6 2.7746 -1.8445 -0.7546 6 6 3.2730 -1.5222 0.6767 7 6 2.0538 -0.7466 1.2457 8 1 1.3027 -1.4349 1.6335 9 6 2.4937 0.2415 2.3277 10 8 2.9957 -0.4908 3.4767 11 6 3.4273 0.2376 4.5257 12 8 3.3848 1.4514 4.4814 13 6 3.9555 -0.4375 5.7235 14 6 3.8962 -1.8250 5.8315 15 6 4.3987 -2.4545 6.9545 16 6 4.9554 -1.7171 7.9908 17 6 5.0231 -0.3448 7.9157 18 6 4.5243 0.3207 6.7807 19 6 4.5894 1.7252 6.6938 20 1 4.7474 2.2003 5.7369 21 6 4.4488 2.5068 7.8504 22 7 4.0800 1.9511 8.9733 23 14 4.7893 4.3424 7.7843 24 1 5.1893 4.7223 6.4055 25 1 3.5632 5.0873 8.1675 26 1 5.8865 4.6765 8.7274 27 1 -0.3632 0.4993 0.8983 28 1 -0.3633 0.5283 -0.8815 29 1 -0.3633 -1.0275 -0.0167 30 1 3.6208 -1.9925 -1.4255 31 1 2.1399 -2.7306 -0.7437 32 1 4.1620 -0.8922 0.6505 33 1 3.4575 -2.4346 1.2438 34 1 1.6430 0.8524 2.6296 35 1 3.2812 0.8843 1.9342 36 1 3.4610 -2.4098 5.0346 37 1 4.3536 -3.5311 7.0288 38 1 5.3389 -2.2250 8.8632 39 1 5.4582 0.2205 8.7265 40 1 3.9825 2.4915 9.7729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869338867.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:00 Heat of formation + Delta-G solvation = -125.141194 kcal Electronic energy + Delta-G solvation = -22843.845373 eV Core-core repulsion = 19394.855700 eV Total energy + Delta-G solvation = -3448.989674 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.97597 -39.15544 -37.28962 -35.43752 -33.80759 -33.02649 -31.54214 -30.16621 -29.68566 -27.79548 -25.64287 -24.42998 -22.59340 -21.67491 -21.03529 -20.63103 -19.62030 -17.52986 -17.03062 -16.51540 -16.08788 -15.53061 -15.46917 -15.11899 -14.53812 -14.27259 -13.94815 -13.66883 -13.45623 -13.03999 -12.79913 -12.72973 -12.36469 -12.11814 -11.95988 -11.69778 -11.57929 -11.21552 -11.12564 -11.08251 -10.87282 -10.82762 -10.68915 -10.63497 -10.20802 -9.90711 -9.74778 -9.66186 -9.38821 -8.83318 -7.69450 -7.47779 -6.92184 -4.53119 2.16582 2.74567 3.04155 3.13103 3.15755 3.40860 3.69153 3.86051 3.89054 4.43930 4.56119 4.66532 4.74840 5.02932 5.07888 5.18358 5.29831 5.41921 5.47383 5.50728 5.60669 5.71610 5.79477 5.84590 5.92040 6.00679 6.08272 6.09099 6.20092 6.31137 6.55278 6.88292 6.89306 7.01016 7.09812 7.27821 7.42070 7.57647 7.85369 7.89792 8.09328 8.52792 8.67052 8.74459 9.05012 10.02465 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018250 B = 0.004204 C = 0.003585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.865575 B = 6658.531965 C = 7808.587465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 H 0.083 0.917 4 O -0.380 6.380 5 C 0.050 3.950 6 C -0.147 4.147 7 C -0.117 4.117 8 H 0.095 0.905 9 C 0.081 3.919 10 O -0.367 6.367 11 C 0.505 3.495 12 O -0.515 6.515 13 C -0.251 4.251 14 C -0.037 4.037 15 C -0.248 4.248 16 C -0.090 4.090 17 C -0.149 4.149 18 C 0.147 3.853 19 C -0.417 4.417 20 H 0.105 0.895 21 C 0.070 3.930 22 N -0.786 5.786 23 Si 0.918 3.082 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.272 1.272 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.793 -4.465 -10.889 12.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.101 0.899 4 O -0.300 6.300 5 C -0.027 4.027 6 C -0.185 4.185 7 C -0.136 4.136 8 H 0.114 0.886 9 C 0.006 3.994 10 O -0.286 6.286 11 C 0.355 3.645 12 O -0.406 6.406 13 C -0.254 4.254 14 C -0.055 4.055 15 C -0.267 4.267 16 C -0.109 4.109 17 C -0.168 4.168 18 C 0.144 3.856 19 C -0.445 4.445 20 H 0.123 0.877 21 C -0.149 4.149 22 N -0.410 5.410 23 Si 0.742 3.258 24 H -0.180 1.180 25 H -0.197 1.197 26 H -0.197 1.197 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.103 0.897 31 H 0.078 0.922 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.138 0.862 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -2.920 -3.965 -10.898 11.959 hybrid contribution -0.032 0.752 0.379 0.843 sum -2.952 -3.213 -10.519 11.388 Atomic orbital electron populations 1.22148 0.94591 1.02672 1.02527 1.22635 0.94391 0.96398 0.83978 0.89896 1.88418 1.71019 1.40585 1.29959 1.23394 0.94937 0.88798 0.95539 1.23292 0.98095 1.01760 0.95350 1.22788 0.98534 0.97862 0.94417 0.88623 1.22629 0.98968 0.93267 0.84559 1.86571 1.75248 1.41596 1.25225 1.21392 0.75081 0.85806 0.82177 1.90738 1.54002 1.14952 1.80900 1.18751 1.16873 0.93075 0.96653 1.20819 0.95380 0.93209 0.96136 1.20360 1.11750 0.97631 0.96959 1.20862 0.98546 0.94598 0.96871 1.21314 1.03193 0.92633 0.99628 1.17462 0.86008 0.93217 0.88959 1.20258 1.37456 0.91263 0.95478 0.87678 1.26147 0.92259 1.02191 0.94333 1.69705 1.31475 1.38807 1.01043 0.86082 0.78827 0.81008 0.79896 1.17969 1.19733 1.19676 0.91214 0.91854 0.92106 0.89745 0.92236 0.90131 0.89213 0.91593 0.91632 0.88019 0.88810 0.88829 0.86242 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.44 37.16 0.35 -1.27 16 2 C 0.08 0.97 3.77 -26.01 -0.10 0.87 16 3 H 0.08 0.95 7.81 -51.93 -0.41 0.55 16 4 O -0.38 -4.76 11.02 -35.23 -0.39 -5.15 16 5 C 0.05 0.51 7.78 38.18 0.30 0.81 16 6 C -0.15 -1.69 6.48 -24.48 -0.16 -1.85 16 7 C -0.12 -1.46 2.81 -88.68 -0.25 -1.71 16 8 H 0.10 1.15 7.86 -51.93 -0.41 0.74 16 9 C 0.08 1.27 4.76 37.16 0.18 1.45 16 10 O -0.37 -7.18 9.35 -40.79 -0.38 -7.56 16 11 C 0.50 11.94 7.84 34.41 0.27 12.21 16 12 O -0.52 -13.27 13.38 -19.29 -0.26 -13.52 16 13 C -0.25 -6.21 5.92 -104.39 -0.62 -6.83 16 14 C -0.04 -0.82 9.60 -39.20 -0.38 -1.19 16 15 C -0.25 -5.26 10.03 -39.37 -0.39 -5.66 16 16 C -0.09 -1.99 10.01 -39.59 -0.40 -2.39 16 17 C -0.15 -3.70 8.62 -38.88 -0.34 -4.03 16 18 C 0.15 3.90 5.51 -106.53 -0.59 3.31 16 19 C -0.42 -11.20 7.68 -37.82 -0.29 -11.49 16 20 H 0.11 2.91 5.92 -52.48 -0.31 2.60 16 21 C 0.07 1.75 5.25 -17.30 -0.09 1.66 16 22 N -0.79 -19.80 11.14 55.57 0.62 -19.18 16 23 Si 0.92 19.04 29.57 -169.99 -5.03 14.02 16 24 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 26 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.08 0.97 8.02 -51.93 -0.42 0.55 16 33 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.10 1.99 7.62 -52.48 -0.40 1.59 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.12 3.01 6.59 -52.49 -0.35 2.66 16 40 H 0.28 6.45 8.29 -40.82 -0.34 6.11 16 LS Contribution 334.60 15.07 5.04 5.04 Total: -1.00 -28.76 334.60 -8.54 -37.30 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.65 Total: 5.17 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -2.50 Total: -16.11 kcal Atomic # 7 Polarization: -19.80 SS G_CDS: 0.62 Total: -19.18 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -1.03 Total: -26.23 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.02 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.76 -8.54 -37.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869338867.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.843 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds