Wall clock time and date at job start Tue Mar 31 2020 06:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.41975 * 2 1 4 4 O 1.44417 * 110.37545 * 122.31337 * 2 1 3 5 5 C 1.44421 * 105.27857 * 159.33917 * 4 2 1 6 6 C 1.54483 * 104.80365 * 319.49100 * 5 4 2 7 7 C 1.54485 * 110.37106 * 237.69555 * 2 1 3 8 8 H 1.08999 * 110.62618 * 335.88864 * 7 2 1 9 9 C 1.52998 * 110.51163 * 98.54433 * 7 2 1 10 10 O 1.45200 * 109.47298 * 181.09757 * 9 7 2 11 11 C 1.34795 * 117.00494 * 179.97438 * 10 9 7 12 12 O 1.21532 * 120.00037 * 0.02562 * 11 10 9 13 13 C 1.47291 * 120.00379 * 179.97438 * 11 10 9 14 14 C 1.39287 * 120.28383 * 358.24407 * 13 11 10 15 15 C 1.38207 * 120.08385 * 179.97438 * 14 13 11 16 16 C 1.38840 * 120.68329 * 359.97438 * 15 14 13 17 17 C 1.37601 * 120.57859 * 359.69669 * 16 15 14 18 18 C 1.40702 * 119.89021 * 0.57595 * 17 16 15 19 19 C 1.40867 * 120.33287 * 179.72089 * 18 17 16 20 20 H 1.07995 * 119.99395 * 145.53713 * 19 18 17 21 21 C 1.40294 * 120.00175 * 325.54378 * 19 18 17 22 22 N 1.30621 * 119.99535 * 341.74194 * 21 19 18 23 23 Si 1.86801 * 120.00144 * 161.74365 * 21 19 18 24 24 H 1.48496 * 109.46963 * 180.02562 * 23 21 19 25 25 H 1.48492 * 109.46905 * 59.99802 * 23 21 19 26 26 H 1.48503 * 109.46619 * 299.99853 * 23 21 19 27 27 H 1.08997 * 109.46922 * 182.30949 * 1 2 3 28 28 H 1.09000 * 109.46819 * 302.30776 * 1 2 3 29 29 H 1.08997 * 109.47000 * 62.30360 * 1 2 3 30 30 H 1.09002 * 110.37473 * 200.65782 * 5 4 2 31 31 H 1.09004 * 110.37428 * 78.32010 * 5 4 2 32 32 H 1.09000 * 110.50982 * 265.33089 * 6 5 4 33 33 H 1.09007 * 110.51035 * 142.62222 * 6 5 4 34 34 H 1.08997 * 109.47436 * 61.09994 * 9 7 2 35 35 H 1.09005 * 109.47164 * 301.09601 * 9 7 2 36 36 H 1.08001 * 119.95919 * 359.97438 * 14 13 11 37 37 H 1.07998 * 119.65912 * 179.97438 * 15 14 13 38 38 H 1.07992 * 119.71049 * 179.97438 * 16 15 14 39 39 H 1.08004 * 120.05311 * 180.27953 * 17 16 15 40 40 H 0.96990 * 120.00310 * 354.45571 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 8 2.0328 -0.7237 1.1442 5 6 3.3873 -1.0872 0.7993 6 6 3.3177 -1.5057 -0.6861 7 6 2.0677 -0.7740 -1.2241 8 1 1.3285 -1.4918 -1.5796 9 6 2.4540 0.1948 -2.3435 10 8 2.9313 -0.5566 -3.4907 11 6 3.3139 0.1530 -4.5710 12 8 3.2508 1.3666 -4.5544 13 6 3.8096 -0.5423 -5.7711 14 6 3.9199 -1.9307 -5.7832 15 6 4.3850 -2.5790 -6.9117 16 6 4.7465 -1.8602 -8.0433 17 6 4.6423 -0.4883 -8.0640 18 6 4.1772 0.1969 -6.9264 19 6 4.0724 1.6016 -6.9354 20 1 3.2742 2.0869 -6.3935 21 6 5.0049 2.3701 -7.6483 22 7 6.1494 1.8477 -7.9995 23 14 4.6096 4.1403 -8.0952 24 1 5.7502 4.7286 -8.8423 25 1 4.3729 4.9226 -6.8555 26 1 3.3914 4.1763 -8.9436 27 1 -0.3633 -1.0268 0.0414 28 1 -0.3633 0.5493 0.8686 29 1 -0.3633 0.4776 -0.9099 30 1 3.7241 -1.9224 1.4134 31 1 4.0526 -0.2325 0.9219 32 1 3.1954 -2.5853 -0.7734 33 1 4.2109 -1.1772 -1.2177 34 1 3.2420 0.8607 -1.9920 35 1 1.5827 0.7831 -2.6316 36 1 3.6416 -2.5015 -4.9096 37 1 4.4682 -3.6557 -6.9135 38 1 5.1084 -2.3827 -8.9163 39 1 4.9216 0.0621 -8.9503 40 1 6.3885 0.9569 -7.6993 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869338873.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:04 Heat of formation + Delta-G solvation = -130.588174 kcal Electronic energy + Delta-G solvation = -22915.323090 eV Core-core repulsion = 19466.097218 eV Total energy + Delta-G solvation = -3449.225872 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.00375 -39.20053 -37.51048 -35.49793 -34.04115 -33.03154 -31.60597 -30.24385 -29.48563 -27.71022 -25.50731 -24.36645 -22.75698 -22.07966 -21.08651 -20.42123 -19.83084 -18.09374 -16.73467 -16.56422 -16.04147 -15.51273 -15.42087 -15.32519 -14.79969 -14.22815 -14.05901 -13.68331 -13.43680 -13.25257 -12.85444 -12.56328 -12.38104 -12.30488 -11.97612 -11.80656 -11.54058 -11.22306 -11.14777 -11.04356 -10.96364 -10.80592 -10.60492 -10.44497 -10.27728 -9.98264 -9.91141 -9.77063 -9.21062 -8.90105 -7.91439 -7.72503 -7.28948 -4.62929 2.04165 2.67179 3.13432 3.23780 3.33972 3.38044 3.72935 3.74539 3.94916 4.45866 4.51329 4.67979 4.74368 4.95768 5.07052 5.17497 5.27533 5.31801 5.38750 5.42906 5.57991 5.70745 5.73661 5.83061 5.90904 5.95310 5.95949 6.03976 6.09771 6.17128 6.43709 6.67572 6.68659 6.87209 7.12661 7.27272 7.41969 7.51607 7.66893 7.76724 8.00943 8.09165 8.56544 8.69511 8.97701 9.90889 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017936 B = 0.004235 C = 0.003662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.749129 B = 6609.512953 C = 7644.963016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.078 3.922 3 H 0.072 0.928 4 O -0.373 6.373 5 C 0.043 3.957 6 C -0.148 4.148 7 C -0.117 4.117 8 H 0.094 0.906 9 C 0.079 3.921 10 O -0.367 6.367 11 C 0.503 3.497 12 O -0.516 6.516 13 C -0.255 4.255 14 C -0.023 4.023 15 C -0.260 4.260 16 C -0.070 4.070 17 C -0.201 4.201 18 C 0.121 3.879 19 C -0.466 4.466 20 H 0.107 0.893 21 C 0.031 3.969 22 N -0.787 5.787 23 Si 1.071 2.929 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.273 1.273 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.110 0.890 40 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -3.588 10.479 12.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.020 3.980 3 H 0.090 0.910 4 O -0.292 6.292 5 C -0.033 4.033 6 C -0.186 4.186 7 C -0.135 4.135 8 H 0.112 0.888 9 C 0.004 3.996 10 O -0.287 6.287 11 C 0.354 3.646 12 O -0.407 6.407 13 C -0.258 4.258 14 C -0.041 4.041 15 C -0.279 4.279 16 C -0.089 4.089 17 C -0.219 4.219 18 C 0.117 3.883 19 C -0.492 4.492 20 H 0.124 0.876 21 C -0.191 4.191 22 N -0.410 5.410 23 Si 0.894 3.106 24 H -0.197 1.197 25 H -0.197 1.197 26 H -0.198 1.198 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.798 -1.960 9.886 11.162 hybrid contribution -0.355 -1.393 0.665 1.584 sum -5.153 -3.353 10.552 12.212 Atomic orbital electron populations 1.21818 0.92832 1.03085 1.02639 1.22921 0.95472 0.95432 0.84160 0.90996 1.89116 1.27342 1.74680 1.38053 1.23448 0.84466 0.99928 0.95501 1.22972 0.98631 1.01523 0.95436 1.22611 0.98529 0.98037 0.94360 0.88792 1.22714 0.99237 0.93227 0.84421 1.86565 1.76733 1.41611 1.23749 1.21324 0.75216 0.85970 0.82103 1.90731 1.52713 1.14925 1.82295 1.18673 1.22115 0.92886 0.92095 1.20901 0.93607 0.93188 0.96447 1.20336 1.14185 0.97794 0.95624 1.20813 0.97115 0.94273 0.96717 1.21222 1.09172 0.93462 0.98088 1.17479 0.88465 0.93517 0.88824 1.21281 1.11774 0.91783 1.24378 0.87578 1.27339 0.92637 1.07635 0.91510 1.70382 1.19568 1.19119 1.31893 0.83543 0.77010 0.72293 0.77771 1.19747 1.19712 1.19799 0.91611 0.91766 0.90860 0.89053 0.92239 0.90325 0.89829 0.91773 0.91670 0.87807 0.88560 0.88591 0.87232 0.88617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.52 37.16 0.35 -1.08 16 2 C 0.08 0.90 3.48 -25.95 -0.09 0.81 16 3 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 4 O -0.37 -4.68 11.34 -35.23 -0.40 -5.08 16 5 C 0.04 0.46 7.63 37.94 0.29 0.75 16 6 C -0.15 -1.75 6.59 -25.16 -0.17 -1.92 16 7 C -0.12 -1.48 2.95 -89.05 -0.26 -1.74 16 8 H 0.09 1.17 7.88 -51.93 -0.41 0.76 16 9 C 0.08 1.24 4.57 37.16 0.17 1.41 16 10 O -0.37 -7.22 9.28 -40.75 -0.38 -7.60 16 11 C 0.50 11.92 7.86 34.41 0.27 12.19 16 12 O -0.52 -13.31 13.32 -19.29 -0.26 -13.57 16 13 C -0.25 -6.29 5.92 -104.39 -0.62 -6.91 16 14 C -0.02 -0.50 9.60 -39.20 -0.38 -0.88 16 15 C -0.26 -5.45 10.03 -39.37 -0.39 -5.84 16 16 C -0.07 -1.52 10.01 -39.59 -0.40 -1.92 16 17 C -0.20 -4.88 7.85 -38.88 -0.31 -5.19 16 18 C 0.12 3.18 5.18 -106.53 -0.55 2.63 16 19 C -0.47 -12.50 7.69 -37.82 -0.29 -12.79 16 20 H 0.11 2.95 5.86 -52.49 -0.31 2.64 16 21 C 0.03 0.79 5.06 -17.29 -0.09 0.70 16 22 N -0.79 -20.48 12.56 55.57 0.70 -19.78 16 23 Si 1.07 21.78 29.98 -169.99 -5.10 16.68 16 24 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 25 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 26 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.07 7.70 -51.93 -0.40 0.67 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 2.03 7.60 -52.49 -0.40 1.63 16 37 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 38 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 2.70 6.92 -52.48 -0.36 2.33 16 40 H 0.30 7.98 6.50 -40.82 -0.27 7.71 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -28.88 333.33 -8.44 -37.32 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -5.58 Total: 6.75 kcal Atomic # 6 Polarization: -17.31 SS G_CDS: -2.46 Total: -19.76 kcal Atomic # 7 Polarization: -20.48 SS G_CDS: 0.70 Total: -19.78 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -1.03 Total: -26.24 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.10 Total: 16.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.88 -8.44 -37.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869338873.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.265 kcal (2) G-P(sol) polarization free energy of solvation -28.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds