Wall clock time and date at job start Tue Mar 31 2020 06:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.98961 * 2 1 4 4 O 1.43749 * 109.87830 * 238.91333 * 2 1 3 5 5 C 1.44376 * 106.97473 * 214.06033 * 4 2 1 6 6 C 1.54994 * 103.49126 * 40.06311 * 5 4 2 7 7 C 1.54098 * 109.88019 * 121.08487 * 2 1 3 8 8 H 1.09000 * 110.60196 * 240.18911 * 7 2 1 9 9 C 1.53006 * 110.48567 * 2.77634 * 7 2 1 10 10 O 1.45206 * 109.46758 * 181.22510 * 9 7 2 11 11 C 1.34808 * 116.99668 * 180.02562 * 10 9 7 12 12 O 1.21529 * 120.00258 * 359.97438 * 11 10 9 13 13 C 1.47287 * 119.99605 * 179.97438 * 11 10 9 14 14 C 1.39287 * 120.29133 * 354.21573 * 13 11 10 15 15 C 1.38204 * 120.08510 * 180.02562 * 14 13 11 16 16 C 1.38835 * 120.68565 * 359.97405 * 15 14 13 17 17 C 1.37601 * 120.58069 * 359.97438 * 16 15 14 18 18 C 1.40706 * 119.88599 * 0.27929 * 17 16 15 19 19 C 1.40867 * 120.32820 * 179.72589 * 18 17 16 20 20 H 1.08003 * 119.99735 * 145.72906 * 19 18 17 21 21 C 1.40288 * 120.00276 * 325.72738 * 19 18 17 22 22 N 1.30617 * 119.99804 * 350.79046 * 21 19 18 23 23 Si 1.86795 * 120.00154 * 170.78897 * 21 19 18 24 24 H 1.48493 * 109.47382 * 90.00004 * 23 21 19 25 25 H 1.48502 * 109.47253 * 210.00069 * 23 21 19 26 26 H 1.48507 * 109.47156 * 329.99952 * 23 21 19 27 27 H 1.09002 * 109.46982 * 298.91658 * 1 2 3 28 28 H 1.08997 * 109.47281 * 58.91347 * 1 2 3 29 29 H 1.09002 * 109.47230 * 178.91899 * 1 2 3 30 30 H 1.09000 * 110.61758 * 281.56381 * 5 4 2 31 31 H 1.08998 * 110.61504 * 158.55972 * 5 4 2 32 32 H 1.09004 * 110.91085 * 204.77596 * 6 5 4 33 33 H 1.09004 * 110.90780 * 81.17248 * 6 5 4 34 34 H 1.08988 * 109.46902 * 61.22557 * 9 7 2 35 35 H 1.08996 * 109.47164 * 301.21657 * 9 7 2 36 36 H 1.07996 * 119.95806 * 359.97438 * 14 13 11 37 37 H 1.08004 * 119.65522 * 179.97438 * 15 14 13 38 38 H 1.07997 * 119.70761 * 179.97438 * 16 15 14 39 39 H 1.08004 * 120.05722 * 179.97438 * 17 16 15 40 40 H 0.97003 * 120.00020 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 8 2.0188 -0.6980 -1.1577 5 6 3.2379 -1.3641 -0.7647 6 6 2.9196 -1.8914 0.6576 7 6 2.0540 -0.7482 1.2411 8 1 2.6614 -0.0872 1.8593 9 6 0.8898 -1.3190 2.0534 10 8 1.4062 -1.9934 3.2311 11 6 0.5035 -2.5562 4.0592 12 8 -0.6826 -2.4847 3.8041 13 6 0.9547 -3.2577 5.2731 14 6 2.3140 -3.4481 5.5102 15 6 2.7326 -4.1074 6.6504 16 6 1.8103 -4.5863 7.5710 17 6 0.4609 -4.4126 7.3651 18 6 0.0076 -3.7495 6.2098 19 6 -1.3719 -3.5717 5.9868 20 1 -1.7286 -2.6791 5.4944 21 6 -2.2824 -4.5540 6.4042 22 7 -1.8466 -5.7079 6.8340 23 14 -4.1178 -4.2118 6.3454 24 1 -4.6567 -4.6267 5.0254 25 1 -4.7987 -4.9768 7.4208 26 1 -4.3571 -2.7596 6.5435 27 1 -0.3633 0.4969 0.8996 28 1 -0.3634 0.5306 -0.8800 29 1 -0.3634 -1.0275 -0.0194 30 1 4.0685 -0.6588 -0.7356 31 1 3.4584 -2.1908 -1.4401 32 1 3.8332 -2.0224 1.2375 33 1 2.3540 -2.8220 0.6099 34 1 0.3343 -2.0299 1.4419 35 1 0.2286 -0.5085 2.3597 36 1 3.0417 -3.0808 4.8018 37 1 3.7883 -4.2516 6.8272 38 1 2.1549 -5.0996 8.4565 39 1 -0.2493 -4.7889 8.0865 40 1 -2.4761 -6.3870 7.1231 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869338874.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:07 Heat of formation + Delta-G solvation = -119.870437 kcal Electronic energy + Delta-G solvation = -23022.816069 eV Core-core repulsion = 19574.054953 eV Total energy + Delta-G solvation = -3448.761116 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.05775 -39.10490 -37.26651 -35.41993 -33.80581 -33.20310 -31.52190 -30.14162 -29.66239 -27.11241 -25.63291 -24.91920 -22.56653 -22.22403 -21.06836 -19.71620 -19.65880 -17.49526 -17.06601 -16.37692 -15.94456 -15.61632 -15.50926 -15.27676 -15.06034 -14.27768 -13.69695 -13.60275 -13.19293 -13.06584 -12.73468 -12.50520 -12.46543 -12.28171 -11.80183 -11.70824 -11.42503 -11.18296 -11.15592 -10.98293 -10.91515 -10.73819 -10.65068 -10.56341 -10.21915 -9.88629 -9.74710 -9.72792 -9.35860 -8.81513 -7.68146 -7.46364 -6.91018 -4.51896 2.18436 2.76953 3.04179 3.10828 3.18302 3.46246 3.76256 3.87719 3.89826 4.47893 4.57761 4.59600 4.85677 4.96241 5.09231 5.25648 5.33059 5.44362 5.51184 5.52532 5.63503 5.70496 5.77033 5.89658 5.96399 6.06193 6.09467 6.14513 6.20186 6.32465 6.57374 6.80554 6.90232 7.02247 7.11044 7.30311 7.43853 7.58946 7.86513 7.90922 8.10525 8.53689 8.68119 8.75703 9.07526 10.03697 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.004505 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.429523 B = 6213.786638 C = 7519.197332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.072 0.928 4 O -0.376 6.376 5 C 0.045 3.955 6 C -0.145 4.145 7 C -0.119 4.119 8 H 0.093 0.907 9 C 0.077 3.923 10 O -0.370 6.370 11 C 0.505 3.495 12 O -0.516 6.516 13 C -0.251 4.251 14 C -0.037 4.037 15 C -0.248 4.248 16 C -0.090 4.090 17 C -0.149 4.149 18 C 0.148 3.852 19 C -0.417 4.417 20 H 0.105 0.895 21 C 0.070 3.930 22 N -0.786 5.786 23 Si 0.919 3.081 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.258 1.258 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.027 6.748 -8.126 12.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.090 0.910 4 O -0.295 6.295 5 C -0.031 4.031 6 C -0.183 4.183 7 C -0.138 4.138 8 H 0.111 0.889 9 C 0.003 3.997 10 O -0.289 6.289 11 C 0.356 3.644 12 O -0.407 6.407 13 C -0.254 4.254 14 C -0.055 4.055 15 C -0.267 4.267 16 C -0.109 4.109 17 C -0.168 4.168 18 C 0.144 3.856 19 C -0.445 4.445 20 H 0.123 0.877 21 C -0.149 4.149 22 N -0.411 5.411 23 Si 0.743 3.257 24 H -0.192 1.192 25 H -0.201 1.201 26 H -0.182 1.182 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.103 0.897 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.137 0.863 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.475 6.554 -8.354 11.946 hybrid contribution -0.689 -0.059 0.120 0.702 sum 4.785 6.495 -8.234 11.527 Atomic orbital electron populations 1.22084 0.93622 1.03553 1.02586 1.22664 0.95405 0.95322 0.84146 0.90966 1.88884 1.39836 1.67775 1.33035 1.23572 0.87530 0.96287 0.95758 1.23172 1.00772 0.98789 0.95577 1.22579 0.97086 0.97773 0.96329 0.88897 1.22956 0.94961 0.96437 0.85352 1.86563 1.41396 1.66767 1.34199 1.21371 0.83751 0.76549 0.82762 1.90730 1.17719 1.58125 1.74090 1.18766 0.93879 1.17082 0.95643 1.20816 0.94073 0.95073 0.95578 1.20358 0.97446 1.10383 0.98546 1.20858 0.93949 0.98371 0.97700 1.21312 0.93927 1.03539 0.98011 1.17456 0.92551 0.87095 0.88516 1.20213 0.90742 1.04459 1.29055 0.87726 1.26145 1.02440 0.94303 0.92027 1.69704 1.37957 1.03834 1.29585 0.86119 0.80722 0.80044 0.78802 1.19181 1.20109 1.18204 0.90665 0.91900 0.91224 0.92212 0.88977 0.89674 0.90094 0.91396 0.91419 0.88028 0.88827 0.88847 0.86261 0.90449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.84 8.40 37.16 0.31 -1.53 16 2 C 0.08 0.95 4.05 -26.16 -0.11 0.85 16 3 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 4 O -0.38 -4.81 11.19 -35.23 -0.39 -5.20 16 5 C 0.05 0.47 7.72 38.21 0.29 0.76 16 6 C -0.15 -1.71 6.56 -24.72 -0.16 -1.88 16 7 C -0.12 -1.49 3.34 -89.09 -0.30 -1.79 16 8 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 9 C 0.08 1.24 3.58 37.16 0.13 1.37 16 10 O -0.37 -7.33 9.33 -40.79 -0.38 -7.71 16 11 C 0.51 12.04 7.84 34.41 0.27 12.31 16 12 O -0.52 -13.33 13.38 -19.29 -0.26 -13.59 16 13 C -0.25 -6.26 5.92 -104.39 -0.62 -6.87 16 14 C -0.04 -0.82 9.60 -39.20 -0.38 -1.20 16 15 C -0.25 -5.30 10.03 -39.37 -0.39 -5.70 16 16 C -0.09 -2.00 10.01 -39.59 -0.40 -2.40 16 17 C -0.15 -3.72 8.62 -38.88 -0.34 -4.05 16 18 C 0.15 3.93 5.51 -106.53 -0.59 3.34 16 19 C -0.42 -11.25 7.68 -37.82 -0.29 -11.54 16 20 H 0.11 2.90 5.91 -52.48 -0.31 2.59 16 21 C 0.07 1.76 5.25 -17.30 -0.09 1.67 16 22 N -0.79 -19.90 11.15 55.56 0.62 -19.28 16 23 Si 0.92 19.14 29.57 -169.99 -5.03 14.12 16 24 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 25 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 27 H 0.07 0.81 6.80 -51.93 -0.35 0.46 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.88 6.75 -51.93 -0.35 0.53 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 1.06 7.83 -51.93 -0.41 0.66 16 34 H 0.07 1.14 6.85 -51.94 -0.36 0.78 16 35 H 0.07 1.06 6.64 -51.93 -0.34 0.72 16 36 H 0.10 2.01 7.61 -52.49 -0.40 1.61 16 37 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 38 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 39 H 0.12 3.01 6.60 -52.48 -0.35 2.67 16 40 H 0.28 6.51 8.29 -40.82 -0.34 6.17 16 LS Contribution 328.31 15.07 4.95 4.95 Total: -1.00 -29.00 328.31 -8.52 -37.52 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -5.38 Total: 5.85 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: -2.65 Total: -16.65 kcal Atomic # 7 Polarization: -19.90 SS G_CDS: 0.62 Total: -19.28 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -1.03 Total: -26.50 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.00 -8.52 -37.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869338874.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.353 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds