Wall clock time and date at job start Tue Mar 31 2020 06:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.98753 * 2 1 4 4 O 1.43744 * 109.88206 * 121.08005 * 2 1 3 5 5 C 1.44374 * 106.97639 * 145.93984 * 4 2 1 6 6 C 1.55002 * 103.49136 * 319.94110 * 5 4 2 7 7 C 1.54095 * 109.88006 * 238.91691 * 2 1 3 8 8 H 1.09001 * 110.49228 * 119.73273 * 7 2 1 9 9 C 1.52998 * 110.48958 * 357.21661 * 7 2 1 10 10 O 1.45193 * 109.47469 * 174.99994 * 9 7 2 11 11 C 1.34803 * 117.00163 * 180.02562 * 10 9 7 12 12 O 1.21530 * 120.00217 * 0.02562 * 11 10 9 13 13 C 1.47293 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.39284 * 120.28805 * 354.01500 * 13 11 10 15 15 C 1.38204 * 120.08625 * 179.97438 * 14 13 11 16 16 C 1.38838 * 120.68032 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.58402 * 359.97438 * 16 15 14 18 18 C 1.40699 * 119.88815 * 359.97438 * 17 16 15 19 19 C 1.40860 * 120.33567 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00296 * 143.39132 * 19 18 17 21 21 C 1.40301 * 119.99665 * 323.39585 * 19 18 17 22 22 N 1.30612 * 120.00344 * 348.61025 * 21 19 18 23 23 Si 1.86807 * 119.99659 * 168.60980 * 21 19 18 24 24 H 1.48494 * 109.47276 * 60.00113 * 23 21 19 25 25 H 1.48503 * 109.46924 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47153 * 299.99707 * 23 21 19 27 27 H 1.09003 * 109.46845 * 181.08853 * 1 2 3 28 28 H 1.09001 * 109.47162 * 301.08293 * 1 2 3 29 29 H 1.08996 * 109.47218 * 61.08940 * 1 2 3 30 30 H 1.09004 * 110.61883 * 78.44251 * 5 4 2 31 31 H 1.09004 * 110.62399 * 201.44232 * 5 4 2 32 32 H 1.09001 * 110.90463 * 278.82543 * 6 5 4 33 33 H 1.09002 * 110.90438 * 155.21832 * 6 5 4 34 34 H 1.09000 * 109.46773 * 55.00065 * 9 7 2 35 35 H 1.09002 * 109.47160 * 295.00889 * 9 7 2 36 36 H 1.07999 * 119.96258 * 359.97438 * 14 13 11 37 37 H 1.08001 * 119.65812 * 179.97438 * 15 14 13 38 38 H 1.08005 * 119.70710 * 180.27156 * 16 15 14 39 39 H 1.08005 * 120.05390 * 179.97438 * 17 16 15 40 40 H 0.96996 * 120.00339 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 1.1577 5 6 3.2379 -1.3640 0.7648 6 6 2.9196 -1.8914 -0.6575 7 6 2.0540 -0.7482 -1.2411 8 1 2.6599 -0.0852 -1.8586 9 6 0.8899 -1.3191 -2.0533 10 8 1.3989 -1.9153 -3.2754 11 6 0.4952 -2.4672 -4.1097 12 8 -0.6858 -2.4500 -3.8237 13 6 0.9392 -3.0910 -5.3680 14 6 2.2724 -3.0056 -5.7622 15 6 2.6845 -3.5929 -6.9434 16 6 1.7812 -4.2720 -7.7498 17 6 0.4577 -4.3735 -7.3872 18 6 0.0120 -3.7856 -6.1891 19 6 -1.3406 -3.8841 -5.8085 20 1 -1.6014 -4.0007 -4.7670 21 6 -2.3490 -3.8307 -6.7825 22 7 -2.0590 -3.4700 -8.0039 23 14 -4.1066 -4.2757 -6.3325 24 1 -4.5903 -3.3637 -5.2650 25 1 -4.9738 -4.1402 -7.5304 26 1 -4.1529 -5.6775 -5.8446 27 1 -0.3633 -1.0275 0.0195 28 1 -0.3633 0.5306 0.8801 29 1 -0.3633 0.4968 -0.8995 30 1 4.0685 -0.6587 0.7356 31 1 3.4586 -2.1906 1.4402 32 1 2.3541 -2.8220 -0.6097 33 1 3.8333 -2.0223 -1.2374 34 1 0.1935 -0.5184 -2.3024 35 1 0.3747 -2.0788 -1.4655 36 1 2.9850 -2.4797 -5.1441 37 1 3.7198 -3.5221 -7.2427 38 1 2.1212 -4.7289 -8.6675 39 1 -0.2377 -4.9035 -8.0212 40 1 -2.7561 -3.4335 -8.6773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869338875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:10 Heat of formation + Delta-G solvation = -120.091226 kcal Electronic energy + Delta-G solvation = -23008.996127 eV Core-core repulsion = 19560.225436 eV Total energy + Delta-G solvation = -3448.770691 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.06040 -39.10738 -37.27316 -35.41757 -33.78132 -33.20722 -31.53196 -30.14477 -29.69248 -27.11049 -25.62310 -24.92077 -22.56416 -22.23954 -21.08250 -19.71500 -19.66895 -17.47903 -17.07418 -16.34170 -15.95580 -15.62188 -15.50551 -15.30951 -15.05429 -14.27611 -13.75009 -13.63342 -13.14374 -13.03493 -12.72129 -12.50730 -12.45560 -12.29198 -11.88178 -11.69790 -11.40681 -11.18698 -11.13492 -10.97541 -10.96227 -10.75774 -10.64219 -10.56982 -10.22273 -9.90312 -9.76146 -9.69857 -9.32676 -8.84761 -7.68984 -7.45385 -6.90528 -4.50562 2.18021 2.77616 3.04437 3.09728 3.19269 3.46300 3.75631 3.87582 3.90832 4.46520 4.57732 4.59374 4.85641 4.95635 5.08833 5.25768 5.33218 5.43665 5.49670 5.51712 5.63417 5.70106 5.77007 5.88563 5.96573 6.04296 6.08167 6.14274 6.19438 6.31001 6.56405 6.80021 6.88799 7.00880 7.11051 7.29622 7.42719 7.57333 7.84214 7.90322 8.09476 8.52976 8.67333 8.75577 9.07333 10.05978 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.004478 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.101727 B = 6251.524134 C = 7555.806176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.073 0.927 4 O -0.376 6.376 5 C 0.045 3.955 6 C -0.146 4.146 7 C -0.119 4.119 8 H 0.093 0.907 9 C 0.077 3.923 10 O -0.370 6.370 11 C 0.505 3.495 12 O -0.514 6.514 13 C -0.248 4.248 14 C -0.037 4.037 15 C -0.247 4.247 16 C -0.089 4.089 17 C -0.149 4.149 18 C 0.151 3.849 19 C -0.420 4.420 20 H 0.102 0.898 21 C 0.073 3.927 22 N -0.787 5.787 23 Si 0.916 3.084 24 H -0.261 1.261 25 H -0.278 1.278 26 H -0.262 1.262 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.115 0.885 40 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.428 3.826 9.694 12.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.090 0.910 4 O -0.295 6.295 5 C -0.031 4.031 6 C -0.183 4.183 7 C -0.138 4.138 8 H 0.112 0.888 9 C 0.003 3.997 10 O -0.290 6.290 11 C 0.355 3.645 12 O -0.404 6.404 13 C -0.251 4.251 14 C -0.056 4.056 15 C -0.266 4.266 16 C -0.108 4.108 17 C -0.167 4.167 18 C 0.147 3.853 19 C -0.448 4.448 20 H 0.120 0.880 21 C -0.147 4.147 22 N -0.411 5.411 23 Si 0.740 3.260 24 H -0.185 1.185 25 H -0.203 1.203 26 H -0.186 1.186 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.120 0.880 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 5.850 3.897 9.782 12.046 hybrid contribution -0.709 0.005 -0.172 0.730 sum 5.141 3.903 9.610 11.576 Atomic orbital electron populations 1.22087 0.93616 1.03531 1.02600 1.22668 0.95410 0.95343 0.84134 0.90953 1.88882 1.39816 1.67784 1.33047 1.23570 0.87560 0.96295 0.95717 1.23188 1.00787 0.98738 0.95634 1.22576 0.97103 0.97786 0.96313 0.88824 1.22974 0.95051 0.97517 0.84194 1.86559 1.41613 1.69697 1.31095 1.21365 0.83679 0.75759 0.83684 1.90746 1.17954 1.57038 1.74701 1.18800 0.95533 1.13307 0.97469 1.20831 0.94093 0.95595 0.95052 1.20361 0.98163 1.09732 0.98353 1.20851 0.94131 0.98192 0.97615 1.21235 0.93976 1.02784 0.98753 1.17431 0.92376 0.86012 0.89464 1.20065 0.90160 1.38586 0.95970 0.88012 1.26094 1.02281 0.92296 0.94008 1.69690 1.36409 1.31951 1.03094 0.86218 0.80358 0.80390 0.79022 1.18548 1.20283 1.18633 0.91262 0.91898 0.90616 0.92202 0.88981 0.90132 0.89670 0.91295 0.91482 0.87992 0.88774 0.88811 0.86715 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 8.38 37.16 0.31 -1.54 16 2 C 0.08 0.95 4.05 -26.16 -0.11 0.85 16 3 H 0.07 0.73 8.14 -51.92 -0.42 0.31 16 4 O -0.38 -4.77 11.19 -35.23 -0.39 -5.16 16 5 C 0.05 0.46 7.72 38.22 0.29 0.75 16 6 C -0.15 -1.69 6.63 -24.72 -0.16 -1.85 16 7 C -0.12 -1.49 3.32 -89.09 -0.30 -1.79 16 8 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 9 C 0.08 1.24 3.60 37.16 0.13 1.37 16 10 O -0.37 -7.34 9.41 -40.77 -0.38 -7.73 16 11 C 0.50 12.05 7.84 34.41 0.27 12.32 16 12 O -0.51 -13.33 13.44 -19.29 -0.26 -13.59 16 13 C -0.25 -6.19 5.92 -104.39 -0.62 -6.81 16 14 C -0.04 -0.83 9.60 -39.20 -0.38 -1.20 16 15 C -0.25 -5.25 10.03 -39.37 -0.39 -5.65 16 16 C -0.09 -1.97 10.01 -39.59 -0.40 -2.37 16 17 C -0.15 -3.69 8.62 -38.89 -0.34 -4.03 16 18 C 0.15 4.01 5.46 -106.53 -0.58 3.43 16 19 C -0.42 -11.34 7.56 -37.82 -0.29 -11.62 16 20 H 0.10 2.82 6.09 -52.49 -0.32 2.50 16 21 C 0.07 1.83 5.20 -17.29 -0.09 1.74 16 22 N -0.79 -20.03 11.44 55.57 0.64 -19.39 16 23 Si 0.92 19.15 29.58 -169.99 -5.03 14.12 16 24 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.54 7.11 56.52 0.40 -5.13 16 26 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 27 H 0.07 0.87 6.86 -51.93 -0.36 0.51 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.83 6.72 -51.93 -0.35 0.48 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.08 1.02 7.77 -51.93 -0.40 0.62 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.10 6.40 -51.93 -0.33 0.77 16 35 H 0.07 1.11 6.98 -51.93 -0.36 0.75 16 36 H 0.10 2.01 7.62 -52.49 -0.40 1.61 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 39 H 0.11 2.88 6.87 -52.48 -0.36 2.52 16 40 H 0.28 6.58 8.29 -40.82 -0.34 6.25 16 LS Contribution 328.90 15.07 4.96 4.96 Total: -1.00 -29.07 328.90 -8.51 -37.58 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.40 Total: 5.62 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.63 Total: -16.39 kcal Atomic # 7 Polarization: -20.03 SS G_CDS: 0.64 Total: -19.39 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -1.04 Total: -26.48 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.07 -8.51 -37.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869338875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.514 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds