Wall clock time and date at job start Tue Mar 31 2020 06:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.98753 * 2 1 4 4 O 1.43744 * 109.88206 * 121.08005 * 2 1 3 5 5 C 1.44374 * 106.97639 * 145.93984 * 4 2 1 6 6 C 1.55002 * 103.49136 * 319.94110 * 5 4 2 7 7 C 1.54095 * 109.88006 * 238.91691 * 2 1 3 8 8 H 1.09001 * 110.49228 * 119.73273 * 7 2 1 9 9 C 1.52998 * 110.48958 * 357.21661 * 7 2 1 10 10 O 1.45193 * 109.47469 * 174.99994 * 9 7 2 11 11 C 1.34803 * 117.00163 * 180.02562 * 10 9 7 12 12 O 1.21530 * 120.00217 * 0.02562 * 11 10 9 13 13 C 1.47293 * 119.99878 * 180.02562 * 11 10 9 14 14 C 1.39284 * 120.28805 * 354.01500 * 13 11 10 15 15 C 1.38204 * 120.08625 * 179.97438 * 14 13 11 16 16 C 1.38838 * 120.68032 * 0.02562 * 15 14 13 17 17 C 1.37598 * 120.58402 * 359.97438 * 16 15 14 18 18 C 1.40699 * 119.88815 * 359.97438 * 17 16 15 19 19 C 1.40860 * 120.33567 * 180.02562 * 18 17 16 20 20 H 1.08000 * 120.00296 * 143.39132 * 19 18 17 21 21 C 1.40301 * 119.99665 * 323.39585 * 19 18 17 22 22 N 1.30612 * 120.00344 * 348.61025 * 21 19 18 23 23 Si 1.86807 * 119.99659 * 168.60980 * 21 19 18 24 24 H 1.48494 * 109.47276 * 60.00113 * 23 21 19 25 25 H 1.48503 * 109.46924 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47153 * 299.99707 * 23 21 19 27 27 H 1.09003 * 109.46845 * 181.08853 * 1 2 3 28 28 H 1.09001 * 109.47162 * 301.08293 * 1 2 3 29 29 H 1.08996 * 109.47218 * 61.08940 * 1 2 3 30 30 H 1.09004 * 110.61883 * 78.44251 * 5 4 2 31 31 H 1.09004 * 110.62399 * 201.44232 * 5 4 2 32 32 H 1.09001 * 110.90463 * 278.82543 * 6 5 4 33 33 H 1.09002 * 110.90438 * 155.21832 * 6 5 4 34 34 H 1.09000 * 109.46773 * 55.00065 * 9 7 2 35 35 H 1.09002 * 109.47160 * 295.00889 * 9 7 2 36 36 H 1.07999 * 119.96258 * 359.97438 * 14 13 11 37 37 H 1.08001 * 119.65812 * 179.97438 * 15 14 13 38 38 H 1.08005 * 119.70710 * 180.27156 * 16 15 14 39 39 H 1.08005 * 120.05390 * 179.97438 * 17 16 15 40 40 H 0.96996 * 120.00339 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6978 1.1577 5 6 3.2379 -1.3640 0.7648 6 6 2.9196 -1.8914 -0.6575 7 6 2.0540 -0.7482 -1.2411 8 1 2.6599 -0.0852 -1.8586 9 6 0.8899 -1.3191 -2.0533 10 8 1.3989 -1.9153 -3.2754 11 6 0.4952 -2.4672 -4.1097 12 8 -0.6858 -2.4500 -3.8237 13 6 0.9392 -3.0910 -5.3680 14 6 2.2724 -3.0056 -5.7622 15 6 2.6845 -3.5929 -6.9434 16 6 1.7812 -4.2720 -7.7498 17 6 0.4577 -4.3735 -7.3872 18 6 0.0120 -3.7856 -6.1891 19 6 -1.3406 -3.8841 -5.8085 20 1 -1.6014 -4.0007 -4.7670 21 6 -2.3490 -3.8307 -6.7825 22 7 -2.0590 -3.4700 -8.0039 23 14 -4.1066 -4.2757 -6.3325 24 1 -4.5903 -3.3637 -5.2650 25 1 -4.9738 -4.1402 -7.5304 26 1 -4.1529 -5.6775 -5.8446 27 1 -0.3633 -1.0275 0.0195 28 1 -0.3633 0.5306 0.8801 29 1 -0.3633 0.4968 -0.8995 30 1 4.0685 -0.6587 0.7356 31 1 3.4586 -2.1906 1.4402 32 1 2.3541 -2.8220 -0.6097 33 1 3.8333 -2.0223 -1.2374 34 1 0.1935 -0.5184 -2.3024 35 1 0.3747 -2.0788 -1.4655 36 1 2.9850 -2.4797 -5.1441 37 1 3.7198 -3.5221 -7.2427 38 1 2.1212 -4.7289 -8.6675 39 1 -0.2377 -4.9035 -8.0212 40 1 -2.7561 -3.4335 -8.6773 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869338875.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:09 Heat of formation + Delta-G solvation = -135.243661 kcal Electronic energy + Delta-G solvation = -23009.653186 eV Core-core repulsion = 19560.225436 eV Total energy + Delta-G solvation = -3449.427749 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38231 -40.52998 -39.02982 -37.14162 -35.61366 -34.35797 -32.43876 -31.97121 -31.51445 -28.33160 -27.35599 -26.08280 -24.29760 -23.13694 -22.90124 -21.44128 -20.77527 -19.35513 -18.54910 -17.74894 -17.42141 -17.01737 -16.92030 -16.63613 -16.22600 -15.95372 -15.29896 -15.13883 -14.74717 -14.46690 -14.22106 -13.96298 -13.62917 -13.47208 -13.32453 -13.14165 -12.89181 -12.88810 -12.57783 -12.51955 -12.34030 -12.02500 -12.01204 -11.88078 -11.66487 -11.51212 -11.35604 -11.17312 -10.75723 -10.62389 -9.52380 -9.31652 -8.75818 -6.46117 0.32631 0.98556 1.33085 1.44252 1.49052 1.91343 2.02694 2.17927 2.70782 2.87769 3.46116 3.54228 3.61133 3.82938 4.05887 4.17404 4.20538 4.32674 4.34215 4.40451 4.46469 4.52355 4.58276 4.64088 4.73195 4.84350 4.87697 5.01634 5.03256 5.07419 5.12380 5.16383 5.20397 5.25964 5.51029 5.62381 5.78691 5.92651 5.98690 6.04384 6.27262 6.59899 6.76176 6.85979 7.24502 8.23121 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017660 B = 0.004478 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.101727 B = 6251.524134 C = 7555.806176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 H 0.096 0.904 4 O -0.395 6.395 5 C 0.047 3.953 6 C -0.148 4.148 7 C -0.114 4.114 8 H 0.108 0.892 9 C 0.074 3.926 10 O -0.362 6.362 11 C 0.505 3.495 12 O -0.545 6.545 13 C -0.274 4.274 14 C -0.038 4.038 15 C -0.236 4.236 16 C -0.082 4.082 17 C -0.174 4.174 18 C 0.123 3.877 19 C -0.460 4.460 20 H 0.080 0.920 21 C 0.037 3.963 22 N -0.815 5.815 23 Si 0.978 3.022 24 H -0.272 1.272 25 H -0.257 1.257 26 H -0.256 1.256 27 H 0.050 0.950 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.062 0.938 33 H 0.097 0.903 34 H 0.067 0.933 35 H 0.055 0.945 36 H 0.129 0.871 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.102 0.898 40 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 4.510 9.874 13.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.114 0.886 4 O -0.315 6.315 5 C -0.029 4.029 6 C -0.185 4.185 7 C -0.133 4.133 8 H 0.126 0.874 9 C 0.000 4.000 10 O -0.280 6.280 11 C 0.356 3.644 12 O -0.438 6.438 13 C -0.276 4.276 14 C -0.057 4.057 15 C -0.254 4.254 16 C -0.100 4.100 17 C -0.193 4.193 18 C 0.120 3.880 19 C -0.488 4.488 20 H 0.098 0.902 21 C -0.179 4.179 22 N -0.440 5.440 23 Si 0.799 3.201 24 H -0.197 1.197 25 H -0.181 1.181 26 H -0.180 1.180 27 H 0.069 0.931 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.123 0.877 32 H 0.080 0.920 33 H 0.116 0.884 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.145 0.855 39 H 0.120 0.880 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 7.887 4.582 9.962 13.507 hybrid contribution -1.134 -0.163 -0.176 1.159 sum 6.754 4.419 9.786 12.685 Atomic orbital electron populations 1.22093 0.94104 1.02551 1.03258 1.22732 0.95133 0.96135 0.83265 0.88636 1.88866 1.40976 1.68186 1.33486 1.23722 0.87291 0.97097 0.94784 1.23205 1.00792 0.97569 0.96972 1.22612 0.95886 0.98402 0.96375 0.87390 1.23272 0.96928 0.96981 0.82815 1.86512 1.40489 1.69164 1.31877 1.21373 0.83579 0.75485 0.83991 1.90723 1.19358 1.58188 1.75505 1.19166 0.96825 1.13608 0.98036 1.21157 0.93279 0.95423 0.95797 1.20856 0.99915 1.07489 0.97177 1.21258 0.92996 0.97117 0.98660 1.21221 0.95320 1.04037 0.98754 1.17796 0.92841 0.86627 0.90731 1.20052 0.91483 1.41783 0.95449 0.90187 1.26770 1.05615 0.91745 0.93794 1.69703 1.37847 1.32677 1.03789 0.85316 0.75899 0.79932 0.78969 1.19726 1.18083 1.17977 0.93089 0.90710 0.90498 0.89969 0.87692 0.91967 0.88430 0.91454 0.92634 0.85273 0.84624 0.85459 0.87977 0.89586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.38 71.98 0.60 -3.05 16 2 C 0.08 1.81 4.05 30.96 0.13 1.94 16 3 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 4 O -0.40 -9.27 11.19 -148.98 -1.67 -10.94 16 5 C 0.05 0.84 7.72 72.67 0.56 1.40 16 6 C -0.15 -3.17 6.63 31.90 0.21 -2.96 16 7 C -0.11 -2.68 3.32 -9.80 -0.03 -2.72 16 8 H 0.11 2.26 8.14 -2.39 -0.02 2.24 16 9 C 0.07 2.38 3.60 71.98 0.26 2.64 16 10 O -0.36 -14.33 9.41 -57.15 -0.54 -14.86 16 11 C 0.50 24.72 7.84 70.20 0.55 25.27 16 12 O -0.54 -29.65 13.44 19.74 0.27 -29.39 16 13 C -0.27 -13.80 5.92 -19.71 -0.12 -13.92 16 14 C -0.04 -1.63 9.60 22.51 0.22 -1.41 16 15 C -0.24 -9.24 10.03 22.41 0.22 -9.02 16 16 C -0.08 -3.46 10.01 22.26 0.22 -3.24 16 17 C -0.17 -8.77 8.62 22.72 0.20 -8.58 16 18 C 0.12 6.76 5.46 -21.10 -0.12 6.65 16 19 C -0.46 -26.05 7.56 23.41 0.18 -25.87 16 20 H 0.08 4.74 6.09 -2.91 -0.02 4.73 16 21 C 0.04 1.93 5.20 85.38 0.44 2.38 16 22 N -0.81 -42.55 11.44 21.89 0.25 -42.30 16 23 Si 0.98 40.42 29.58 68.60 2.03 42.45 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 26 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 27 H 0.05 1.31 6.86 -2.39 -0.02 1.29 16 28 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.08 1.67 6.72 -2.39 -0.02 1.66 16 30 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.06 1.56 7.77 -2.39 -0.02 1.54 16 33 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.19 6.40 -2.39 -0.02 2.17 16 35 H 0.06 1.92 6.98 -2.39 -0.02 1.90 16 36 H 0.13 4.70 7.62 -2.91 -0.02 4.67 16 37 H 0.14 4.23 8.06 -2.91 -0.02 4.21 16 38 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.10 5.29 6.87 -2.91 -0.02 5.27 16 40 H 0.29 13.76 8.29 -92.71 -0.77 12.99 16 Total: -1.00 -65.04 328.90 4.91 -60.12 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.05 Total: 25.41 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 3.53 Total: -30.49 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.25 Total: -42.30 kcal Atomic # 8 Polarization: -53.26 SS G_CDS: -1.94 Total: -55.19 kcal Atomic # 14 Polarization: 40.42 SS G_CDS: 2.03 Total: 42.45 kcal Total: -65.04 4.91 -60.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869338875.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.122 kcal (2) G-P(sol) polarization free energy of solvation -65.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds