Wall clock time and date at job start Tue Mar 31 2020 06:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.89129 * 2 1 4 4 O 1.43236 * 109.83155 * 239.06548 * 2 1 3 5 5 C 1.43646 * 109.96905 * 242.20087 * 4 2 1 6 6 C 1.54943 * 105.13360 * 335.56838 * 5 4 2 7 7 C 1.54376 * 109.82724 * 120.92889 * 2 1 3 8 8 H 1.09000 * 111.02509 * 22.60537 * 7 2 1 9 9 C 1.53003 * 110.85057 * 259.06226 * 7 2 1 10 10 O 1.45196 * 109.47133 * 180.71922 * 9 7 2 11 11 C 1.34781 * 116.99678 * 179.97438 * 10 9 7 12 12 O 1.21507 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.47510 * 119.99977 * 179.97438 * 11 10 9 14 14 C 1.40063 * 119.90065 * 179.97438 * 13 11 10 15 15 C 1.36305 * 120.10150 * 180.02562 * 14 13 11 16 16 C 1.40896 * 119.89624 * 0.02562 * 15 14 13 17 17 C 1.41092 * 120.09852 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99576 * 25.88307 * 17 16 15 19 19 C 1.40250 * 120.00083 * 205.88883 * 17 16 15 20 20 N 1.30628 * 120.00242 * 199.95467 * 19 17 16 21 21 Si 1.86797 * 119.99815 * 19.95045 * 19 17 16 22 22 H 1.48504 * 109.47436 * 264.71298 * 21 19 17 23 23 H 1.48505 * 109.47038 * 144.71490 * 21 19 17 24 24 H 1.48506 * 109.47275 * 24.71496 * 21 19 17 25 25 C 1.40898 * 119.80448 * 0.26806 * 16 15 14 26 26 C 1.36301 * 119.89606 * 359.42786 * 25 16 15 27 27 H 1.08993 * 109.47302 * 299.07015 * 1 2 3 28 28 H 1.09006 * 109.46959 * 59.07199 * 1 2 3 29 29 H 1.09006 * 109.46918 * 179.06425 * 1 2 3 30 30 H 1.09004 * 110.30748 * 216.66203 * 5 4 2 31 31 H 1.08995 * 110.31305 * 94.48932 * 5 4 2 32 32 H 1.08999 * 111.13011 * 278.52868 * 6 5 4 33 33 H 1.09008 * 111.15700 * 154.38239 * 6 5 4 34 34 H 1.09002 * 109.46944 * 60.71462 * 9 7 2 35 35 H 1.09007 * 109.46740 * 300.71753 * 9 7 2 36 36 H 1.07996 * 119.95078 * 0.03305 * 14 13 11 37 37 H 1.07998 * 120.04855 * 180.02562 * 15 14 13 38 38 H 0.97005 * 119.99423 * 5.11416 * 20 19 17 39 39 H 1.07996 * 120.05497 * 179.70169 * 25 16 15 40 40 H 1.08003 * 119.95025 * 180.29480 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 8 2.0160 -0.6927 -1.1558 5 6 2.7747 -1.8445 -0.7544 6 6 3.2730 -1.5220 0.6768 7 6 2.0537 -0.7464 1.2457 8 1 1.3027 -1.4347 1.6336 9 6 2.4936 0.2418 2.3278 10 8 2.9955 -0.4904 3.4768 11 6 3.4270 0.2379 4.5256 12 8 3.3853 1.4515 4.4808 13 6 3.9499 -0.4382 5.7278 14 6 4.3982 0.3207 6.8163 15 6 4.8826 -0.2998 7.9290 16 6 4.9325 -1.7069 7.9830 17 6 5.4326 -2.3536 9.1329 18 1 5.3866 -1.8606 10.0926 19 6 5.9894 -3.6367 9.0295 20 7 6.0928 -4.3913 10.0907 21 14 6.5832 -4.2665 7.3742 22 1 5.5110 -5.0732 6.7379 23 1 7.7887 -5.1115 7.5695 24 1 6.9221 -3.1154 6.4991 25 6 4.4861 -2.4661 6.8832 26 6 3.9975 -1.8372 5.7770 27 1 -0.3633 0.4993 0.8981 28 1 -0.3633 0.5282 -0.8816 29 1 -0.3633 -1.0276 -0.0168 30 1 3.6211 -1.9925 -1.4252 31 1 2.1401 -2.7306 -0.7435 32 1 4.1620 -0.8919 0.6508 33 1 3.4576 -2.4344 1.2440 34 1 1.6427 0.8527 2.6295 35 1 3.2811 0.8846 1.9343 36 1 4.3599 1.3992 6.7740 37 1 5.2277 0.2862 8.7680 38 1 5.7178 -4.0950 10.9349 39 1 4.5270 -3.5447 6.9183 40 1 3.6507 -2.4185 4.9354 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869452890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:16 Heat of formation + Delta-G solvation = -135.891225 kcal Electronic energy + Delta-G solvation = -22416.471528 eV Core-core repulsion = 18967.015698 eV Total energy + Delta-G solvation = -3449.455830 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.17778 -39.43056 -37.76433 -35.88307 -34.09735 -33.21851 -31.65192 -30.77952 -30.06270 -28.06902 -25.98218 -24.40400 -22.35925 -21.72505 -21.32494 -20.78717 -20.11464 -18.43554 -17.27515 -17.10560 -16.31500 -15.96593 -15.69364 -14.71567 -14.58532 -14.55245 -14.10444 -14.02459 -13.78107 -13.42146 -12.94290 -12.70662 -12.61009 -12.46947 -12.22968 -12.06404 -11.76814 -11.58428 -11.23786 -11.21509 -11.05629 -10.94503 -10.90471 -10.33467 -10.24627 -10.19351 -9.76267 -9.68729 -9.60234 -9.33811 -8.04932 -7.95568 -7.68372 -4.92192 1.82587 2.63047 3.00232 3.11175 3.12973 3.39105 3.45959 3.58504 3.78934 4.29211 4.33829 4.49667 4.61943 4.90164 4.97746 5.04224 5.14140 5.18747 5.27137 5.37112 5.40294 5.56588 5.63694 5.71287 5.78062 5.83106 5.89575 5.92391 5.95317 6.06181 6.36324 6.60800 6.68168 6.78252 6.89415 7.06669 7.15162 7.30873 7.41544 7.54581 7.68652 8.05811 8.21067 8.39523 8.54849 9.58978 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.003530 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.396397 B = 7929.630029 C = 8800.082345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.084 3.916 3 H 0.083 0.917 4 O -0.379 6.379 5 C 0.050 3.950 6 C -0.149 4.149 7 C -0.119 4.119 8 H 0.097 0.903 9 C 0.080 3.920 10 O -0.358 6.358 11 C 0.516 3.484 12 O -0.549 6.549 13 C -0.280 4.280 14 C -0.011 4.011 15 C -0.229 4.229 16 C 0.112 3.888 17 C -0.478 4.478 18 H 0.085 0.915 19 C 0.041 3.959 20 N -0.784 5.784 21 Si 1.073 2.927 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.257 1.257 25 C -0.260 4.260 26 C -0.011 4.011 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.293 0.707 39 H 0.107 0.893 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 1.882 -14.819 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.027 3.973 3 H 0.101 0.899 4 O -0.299 6.299 5 C -0.027 4.027 6 C -0.186 4.186 7 C -0.138 4.138 8 H 0.116 0.884 9 C 0.006 3.994 10 O -0.276 6.276 11 C 0.368 3.632 12 O -0.443 6.443 13 C -0.282 4.282 14 C -0.030 4.030 15 C -0.248 4.248 16 C 0.108 3.892 17 C -0.504 4.504 18 H 0.103 0.897 19 C -0.183 4.183 20 N -0.403 5.403 21 Si 0.898 3.102 22 H -0.199 1.199 23 H -0.214 1.214 24 H -0.181 1.181 25 C -0.279 4.279 26 C -0.030 4.030 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.997 0.989 -15.653 16.461 hybrid contribution -0.873 1.329 1.247 2.021 sum -5.870 2.318 -14.406 15.728 Atomic orbital electron populations 1.22155 0.94528 1.02784 1.02524 1.22618 0.94434 0.96328 0.83938 0.89943 1.88427 1.71024 1.40610 1.29829 1.23402 0.95013 0.88802 0.95452 1.23312 0.97953 1.01830 0.95524 1.22809 0.98734 0.97854 0.94364 0.88434 1.22723 0.99021 0.93378 0.84327 1.86563 1.74622 1.41204 1.25244 1.21471 0.73950 0.85462 0.82302 1.90713 1.55965 1.15389 1.82208 1.18175 1.22492 0.93255 0.94320 1.20416 0.92702 0.98149 0.91730 1.20668 1.11177 0.94179 0.98803 1.17913 0.87517 0.92027 0.91746 1.21054 1.32417 1.00955 0.96019 0.89671 1.27637 0.92676 0.92489 1.05464 1.70469 1.30567 1.36664 1.02596 0.83575 0.76699 0.77382 0.72528 1.19940 1.21361 1.18084 1.20722 1.11773 0.98491 0.96916 1.20569 0.93316 0.92894 0.96176 0.91277 0.91773 0.92014 0.89625 0.92104 0.90119 0.89065 0.91402 0.91415 0.87513 0.87702 0.89535 0.87516 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.44 37.16 0.35 -1.07 16 2 C 0.08 0.87 3.77 -26.01 -0.10 0.77 16 3 H 0.08 0.82 7.81 -51.93 -0.41 0.42 16 4 O -0.38 -4.36 11.02 -35.23 -0.39 -4.75 16 5 C 0.05 0.47 7.78 38.18 0.30 0.77 16 6 C -0.15 -1.54 6.48 -24.48 -0.16 -1.70 16 7 C -0.12 -1.31 2.81 -88.67 -0.25 -1.55 16 8 H 0.10 1.04 7.86 -51.93 -0.41 0.63 16 9 C 0.08 1.09 4.76 37.16 0.18 1.27 16 10 O -0.36 -6.21 9.31 -40.71 -0.38 -6.58 16 11 C 0.52 10.57 7.89 34.51 0.27 10.84 16 12 O -0.55 -12.08 16.11 -19.27 -0.31 -12.39 16 13 C -0.28 -6.09 5.89 -104.75 -0.62 -6.71 16 14 C -0.01 -0.25 9.52 -39.59 -0.38 -0.63 16 15 C -0.23 -5.19 9.73 -39.27 -0.38 -5.57 16 16 C 0.11 2.68 5.20 -106.80 -0.56 2.12 16 17 C -0.48 -11.79 9.43 -37.74 -0.36 -12.15 16 18 H 0.09 2.14 8.06 -52.49 -0.42 1.71 16 19 C 0.04 0.99 5.40 -17.31 -0.09 0.89 16 20 N -0.78 -19.12 13.64 55.56 0.76 -18.36 16 21 Si 1.07 22.28 24.83 -169.99 -4.22 18.06 16 22 H -0.27 -5.34 6.64 56.52 0.38 -4.97 16 23 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 24 H -0.26 -5.36 6.84 56.52 0.39 -4.97 16 25 C -0.26 -5.90 7.14 -39.27 -0.28 -6.18 16 26 C -0.01 -0.23 9.55 -39.59 -0.38 -0.61 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.09 0.93 8.14 -51.92 -0.42 0.50 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.93 8.10 -51.92 -0.42 0.51 16 36 H 0.11 2.21 7.63 -52.49 -0.40 1.81 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 38 H 0.29 6.89 8.73 -40.82 -0.36 6.53 16 39 H 0.11 2.34 4.27 -52.49 -0.22 2.11 16 40 H 0.11 2.01 7.59 -52.48 -0.40 1.61 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -26.90 333.39 -7.64 -34.53 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -5.67 Total: 3.99 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: -2.45 Total: -19.52 kcal Atomic # 7 Polarization: -19.12 SS G_CDS: 0.76 Total: -18.36 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -1.08 Total: -23.72 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.22 Total: 18.06 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.90 -7.64 -34.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869452890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.356 kcal (2) G-P(sol) polarization free energy of solvation -26.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds