Wall clock time and date at job start Tue Mar 31 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.89129 * 2 1 4 4 O 1.43236 * 109.83155 * 239.06548 * 2 1 3 5 5 C 1.43646 * 109.96905 * 242.20087 * 4 2 1 6 6 C 1.54943 * 105.13360 * 335.56838 * 5 4 2 7 7 C 1.54376 * 109.82724 * 120.92889 * 2 1 3 8 8 H 1.09000 * 111.02509 * 22.60537 * 7 2 1 9 9 C 1.53003 * 110.85057 * 259.06226 * 7 2 1 10 10 O 1.45196 * 109.47133 * 180.71922 * 9 7 2 11 11 C 1.34781 * 116.99678 * 179.97438 * 10 9 7 12 12 O 1.21507 * 120.00161 * 359.97438 * 11 10 9 13 13 C 1.47510 * 119.99977 * 179.97438 * 11 10 9 14 14 C 1.40063 * 119.90065 * 179.97438 * 13 11 10 15 15 C 1.36305 * 120.10150 * 180.02562 * 14 13 11 16 16 C 1.40896 * 119.89624 * 0.02562 * 15 14 13 17 17 C 1.41092 * 120.09852 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99576 * 25.88307 * 17 16 15 19 19 C 1.40250 * 120.00083 * 205.88883 * 17 16 15 20 20 N 1.30628 * 120.00242 * 199.95467 * 19 17 16 21 21 Si 1.86797 * 119.99815 * 19.95045 * 19 17 16 22 22 H 1.48504 * 109.47436 * 264.71298 * 21 19 17 23 23 H 1.48505 * 109.47038 * 144.71490 * 21 19 17 24 24 H 1.48506 * 109.47275 * 24.71496 * 21 19 17 25 25 C 1.40898 * 119.80448 * 0.26806 * 16 15 14 26 26 C 1.36301 * 119.89606 * 359.42786 * 25 16 15 27 27 H 1.08993 * 109.47302 * 299.07015 * 1 2 3 28 28 H 1.09006 * 109.46959 * 59.07199 * 1 2 3 29 29 H 1.09006 * 109.46918 * 179.06425 * 1 2 3 30 30 H 1.09004 * 110.30748 * 216.66203 * 5 4 2 31 31 H 1.08995 * 110.31305 * 94.48932 * 5 4 2 32 32 H 1.08999 * 111.13011 * 278.52868 * 6 5 4 33 33 H 1.09008 * 111.15700 * 154.38239 * 6 5 4 34 34 H 1.09002 * 109.46944 * 60.71462 * 9 7 2 35 35 H 1.09007 * 109.46740 * 300.71753 * 9 7 2 36 36 H 1.07996 * 119.95078 * 0.03305 * 14 13 11 37 37 H 1.07998 * 120.04855 * 180.02562 * 15 14 13 38 38 H 0.97005 * 119.99423 * 5.11416 * 20 19 17 39 39 H 1.07996 * 120.05497 * 179.70169 * 25 16 15 40 40 H 1.08003 * 119.95025 * 180.29480 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 8 2.0160 -0.6927 -1.1558 5 6 2.7747 -1.8445 -0.7544 6 6 3.2730 -1.5220 0.6768 7 6 2.0537 -0.7464 1.2457 8 1 1.3027 -1.4347 1.6336 9 6 2.4936 0.2418 2.3278 10 8 2.9955 -0.4904 3.4768 11 6 3.4270 0.2379 4.5256 12 8 3.3853 1.4515 4.4808 13 6 3.9499 -0.4382 5.7278 14 6 4.3982 0.3207 6.8163 15 6 4.8826 -0.2998 7.9290 16 6 4.9325 -1.7069 7.9830 17 6 5.4326 -2.3536 9.1329 18 1 5.3866 -1.8606 10.0926 19 6 5.9894 -3.6367 9.0295 20 7 6.0928 -4.3913 10.0907 21 14 6.5832 -4.2665 7.3742 22 1 5.5110 -5.0732 6.7379 23 1 7.7887 -5.1115 7.5695 24 1 6.9221 -3.1154 6.4991 25 6 4.4861 -2.4661 6.8832 26 6 3.9975 -1.8372 5.7770 27 1 -0.3633 0.4993 0.8981 28 1 -0.3633 0.5282 -0.8816 29 1 -0.3633 -1.0276 -0.0168 30 1 3.6211 -1.9925 -1.4252 31 1 2.1401 -2.7306 -0.7435 32 1 4.1620 -0.8919 0.6508 33 1 3.4576 -2.4344 1.2440 34 1 1.6427 0.8527 2.6295 35 1 3.2811 0.8846 1.9343 36 1 4.3599 1.3992 6.7740 37 1 5.2277 0.2862 8.7680 38 1 5.7178 -4.0950 10.9349 39 1 4.5270 -3.5447 6.9183 40 1 3.6507 -2.4185 4.9354 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869452890.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:15 Heat of formation + Delta-G solvation = -149.137674 kcal Electronic energy + Delta-G solvation = -22417.045937 eV Core-core repulsion = 18967.015698 eV Total energy + Delta-G solvation = -3450.030239 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.45835 -40.55998 -39.46115 -37.38051 -35.88422 -34.18565 -32.54451 -32.37384 -31.80840 -29.09701 -27.58042 -25.42166 -23.88700 -23.09905 -22.63886 -21.78126 -21.58396 -20.23597 -18.76963 -18.29780 -17.52623 -17.20125 -16.77036 -16.34984 -16.20866 -15.78542 -15.42121 -15.16022 -15.00782 -14.61491 -14.32607 -14.29743 -14.00302 -13.79928 -13.39538 -13.18106 -12.94893 -12.89214 -12.71574 -12.56880 -12.11563 -12.04059 -11.98809 -11.85817 -11.79256 -11.45910 -11.39755 -11.29993 -11.02129 -10.53025 -9.81186 -9.73734 -9.52150 -6.78661 0.09519 0.86853 1.35235 1.46359 1.74899 1.75798 1.80653 2.12899 2.56201 2.81784 3.38758 3.42193 3.56415 3.78899 4.04711 4.08550 4.14898 4.23118 4.24626 4.27252 4.35964 4.37494 4.50516 4.63947 4.71368 4.80232 4.86667 4.88568 4.90787 5.00860 5.03642 5.18032 5.24308 5.28055 5.35381 5.36165 5.55804 5.65375 5.75836 5.91319 6.02511 6.22475 6.41582 6.59268 6.94987 7.76069 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.023243 B = 0.003530 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.396397 B = 7929.630029 C = 8800.082345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.084 3.916 3 H 0.083 0.917 4 O -0.396 6.396 5 C 0.049 3.951 6 C -0.150 4.150 7 C -0.113 4.113 8 H 0.104 0.896 9 C 0.076 3.924 10 O -0.353 6.353 11 C 0.523 3.477 12 O -0.565 6.565 13 C -0.282 4.282 14 C -0.015 4.015 15 C -0.240 4.240 16 C 0.100 3.900 17 C -0.510 4.510 18 H 0.064 0.936 19 C 0.017 3.983 20 N -0.806 5.806 21 Si 1.098 2.902 22 H -0.250 1.250 23 H -0.278 1.278 24 H -0.260 1.260 25 C -0.269 4.269 26 C -0.006 4.006 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.288 0.712 39 H 0.116 0.884 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.522 1.539 -17.415 18.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.100 0.900 4 O -0.317 6.317 5 C -0.026 4.026 6 C -0.188 4.188 7 C -0.132 4.132 8 H 0.123 0.877 9 C 0.002 3.998 10 O -0.270 6.270 11 C 0.374 3.626 12 O -0.460 6.460 13 C -0.285 4.285 14 C -0.033 4.033 15 C -0.259 4.259 16 C 0.096 3.904 17 C -0.537 4.537 18 H 0.082 0.918 19 C -0.202 4.202 20 N -0.426 5.426 21 Si 0.918 3.082 22 H -0.175 1.175 23 H -0.204 1.204 24 H -0.184 1.184 25 C -0.288 4.288 26 C -0.024 4.024 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.116 0.884 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.099 0.901 39 H 0.133 0.867 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.846 0.641 -18.249 19.173 hybrid contribution -0.709 1.608 1.899 2.587 sum -6.556 2.249 -16.349 17.758 Atomic orbital electron populations 1.22147 0.93381 1.03151 1.03101 1.22659 0.95327 0.96122 0.83211 0.89950 1.88413 1.71406 1.41372 1.30469 1.23513 0.95508 0.88585 0.95036 1.23330 0.97430 1.01781 0.96228 1.22787 0.99214 0.97466 0.93690 0.87740 1.23021 0.99087 0.94135 0.83534 1.86526 1.74021 1.41117 1.25382 1.21213 0.73576 0.85076 0.82686 1.90711 1.56488 1.16141 1.82679 1.18500 1.21350 0.93836 0.94780 1.20584 0.92315 0.98843 0.91586 1.20821 1.11524 0.94062 0.99486 1.18116 0.87491 0.92695 0.92071 1.21012 1.35125 1.01931 0.95656 0.91793 1.28546 0.92083 0.92322 1.07265 1.70515 1.32116 1.37123 1.02834 0.83294 0.77468 0.77362 0.70064 1.17480 1.20426 1.18410 1.20887 1.11890 0.99045 0.96948 1.20843 0.92176 0.92834 0.96537 0.90552 0.91398 0.91746 0.88405 0.90932 0.90729 0.88658 0.90898 0.91463 0.86486 0.87160 0.90064 0.86684 0.84372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.44 71.98 0.68 -1.73 16 2 C 0.08 1.53 3.77 31.06 0.12 1.64 16 3 H 0.08 1.47 7.81 -2.39 -0.02 1.46 16 4 O -0.40 -8.17 11.02 -148.98 -1.64 -9.81 16 5 C 0.05 0.80 7.78 72.65 0.56 1.37 16 6 C -0.15 -2.71 6.48 32.05 0.21 -2.51 16 7 C -0.11 -2.17 2.81 -9.53 -0.03 -2.20 16 8 H 0.10 1.89 7.86 -2.39 -0.02 1.87 16 9 C 0.08 1.88 4.76 71.98 0.34 2.23 16 10 O -0.35 -11.19 9.31 -56.92 -0.53 -11.72 16 11 C 0.52 20.11 7.89 70.27 0.55 20.67 16 12 O -0.57 -23.69 16.11 19.81 0.32 -23.37 16 13 C -0.28 -11.67 5.89 -19.95 -0.12 -11.79 16 14 C -0.01 -0.63 9.52 22.26 0.21 -0.42 16 15 C -0.24 -10.83 9.73 22.47 0.22 -10.61 16 16 C 0.10 4.77 5.20 -21.28 -0.11 4.66 16 17 C -0.51 -25.80 9.43 23.46 0.22 -25.58 16 18 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 19 C 0.02 0.83 5.40 85.36 0.46 1.29 16 20 N -0.81 -40.05 13.64 21.88 0.30 -39.75 16 21 Si 1.10 43.71 24.83 68.60 1.70 45.41 16 22 H -0.25 -8.96 6.64 99.48 0.66 -8.30 16 23 H -0.28 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.26 -10.38 6.84 99.48 0.68 -9.70 16 25 C -0.27 -11.75 7.14 22.47 0.16 -11.59 16 26 C -0.01 -0.22 9.55 22.26 0.21 -0.01 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.10 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.44 8.02 -2.39 -0.02 1.42 16 33 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.07 1.69 8.10 -2.38 -0.02 1.67 16 36 H 0.12 4.70 7.63 -2.91 -0.02 4.68 16 37 H 0.11 4.73 8.06 -2.91 -0.02 4.70 16 38 H 0.29 14.06 8.73 -92.70 -0.81 13.25 16 39 H 0.12 4.80 4.27 -2.91 -0.01 4.79 16 40 H 0.14 4.60 7.59 -2.91 -0.02 4.58 16 Total: -1.00 -56.14 333.39 4.77 -51.36 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: 0.92 Total: 22.46 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 3.70 Total: -34.57 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.30 Total: -39.75 kcal Atomic # 8 Polarization: -43.06 SS G_CDS: -1.85 Total: -44.91 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.70 Total: 45.41 kcal Total: -56.14 4.77 -51.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869452890.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.773 kcal (2) G-P(sol) polarization free energy of solvation -56.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds