Wall clock time and date at job start Tue Mar 31 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.99182 * 2 1 4 4 O 1.43747 * 109.87677 * 121.08637 * 2 1 3 5 5 C 1.44376 * 106.97485 * 145.94109 * 4 2 1 6 6 C 1.54994 * 103.49257 * 319.93627 * 5 4 2 7 7 C 1.54103 * 109.88162 * 238.91270 * 2 1 3 8 8 H 1.09002 * 110.59426 * 119.81311 * 7 2 1 9 9 C 1.53002 * 110.48836 * 357.22549 * 7 2 1 10 10 O 1.45198 * 109.47019 * 178.77537 * 9 7 2 11 11 C 1.34777 * 116.99574 * 180.02562 * 10 9 7 12 12 O 1.21507 * 120.00087 * 359.97438 * 11 10 9 13 13 C 1.47509 * 119.99587 * 180.02562 * 11 10 9 14 14 C 1.40078 * 119.89793 * 179.97438 * 13 11 10 15 15 C 1.36302 * 120.10009 * 180.02562 * 14 13 11 16 16 C 1.40897 * 119.89714 * 359.97438 * 15 14 13 17 17 C 1.41093 * 120.09778 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00251 * 334.91100 * 17 16 15 19 19 C 1.40247 * 119.99614 * 154.90836 * 17 16 15 20 20 N 1.30629 * 120.00279 * 342.66852 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 162.66787 * 19 17 16 22 22 H 1.48499 * 109.47207 * 265.57903 * 21 19 17 23 23 H 1.48502 * 109.47007 * 145.57505 * 21 19 17 24 24 H 1.48506 * 109.47066 * 25.57825 * 21 19 17 25 25 C 1.40905 * 119.80346 * 0.27883 * 16 15 14 26 26 C 1.36299 * 119.89805 * 359.41389 * 25 16 15 27 27 H 1.09006 * 109.46829 * 181.07995 * 1 2 3 28 28 H 1.08993 * 109.47411 * 301.08392 * 1 2 3 29 29 H 1.08996 * 109.47021 * 61.08853 * 1 2 3 30 30 H 1.09005 * 110.61864 * 201.43373 * 5 4 2 31 31 H 1.09005 * 110.62172 * 78.44126 * 5 4 2 32 32 H 1.09005 * 110.90682 * 278.82967 * 6 5 4 33 33 H 1.08991 * 110.93877 * 155.23959 * 6 5 4 34 34 H 1.09003 * 109.47113 * 58.77324 * 9 7 2 35 35 H 1.09000 * 109.46797 * 298.77637 * 9 7 2 36 36 H 1.08000 * 119.94942 * 0.02804 * 14 13 11 37 37 H 1.07994 * 120.05271 * 179.97438 * 15 14 13 38 38 H 0.97005 * 119.99996 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.05174 * 179.70195 * 25 16 15 40 40 H 1.07999 * 119.95251 * 180.29740 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6980 1.1577 5 6 3.2379 -1.3641 0.7648 6 6 2.9196 -1.8914 -0.6575 7 6 2.0541 -0.7483 -1.2410 8 1 2.6615 -0.0872 -1.8592 9 6 0.8900 -1.3191 -2.0534 10 8 1.4064 -1.9935 -3.2310 11 6 0.5038 -2.5553 -4.0595 12 8 -0.6820 -2.4838 -3.8044 13 6 0.9557 -3.2578 -5.2752 14 6 0.0159 -3.8414 -6.1345 15 6 0.4290 -4.4920 -7.2588 16 6 1.8036 -4.5766 -7.5562 17 6 2.2358 -5.2486 -8.7191 18 1 1.6200 -6.0197 -9.1575 19 6 3.4653 -4.9150 -9.3056 20 7 4.0487 -3.7861 -9.0026 21 14 4.2687 -6.0850 -10.5201 22 1 5.2355 -6.9552 -9.8037 23 1 4.9832 -5.3037 -11.5615 24 1 3.2260 -6.9262 -11.1608 25 6 2.7456 -3.9927 -6.6861 26 6 2.3232 -3.3386 -5.5674 27 1 -0.3633 -1.0276 0.0194 28 1 -0.3634 0.5305 0.8800 29 1 -0.3633 0.4968 -0.8996 30 1 3.4585 -2.1908 1.4402 31 1 4.0685 -0.6588 0.7357 32 1 2.3540 -2.8220 -0.6098 33 1 3.8329 -2.0228 -1.2376 34 1 0.2286 -0.5085 -2.3596 35 1 0.3343 -2.0300 -1.4419 36 1 -1.0376 -3.7756 -5.9059 37 1 -0.2962 -4.9419 -7.9205 38 1 4.8989 -3.5553 -9.4085 39 1 3.8006 -4.0593 -6.9077 40 1 3.0442 -2.8866 -4.9024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869452893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:19 Heat of formation + Delta-G solvation = -128.317189 kcal Electronic energy + Delta-G solvation = -22413.070644 eV Core-core repulsion = 18963.943249 eV Total energy + Delta-G solvation = -3449.127395 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.17125 -39.25889 -37.46166 -35.73024 -33.97150 -33.33712 -31.58777 -30.37252 -29.53734 -27.37826 -26.08757 -24.94281 -22.40951 -22.24259 -20.99499 -19.98084 -19.78394 -17.59002 -17.22877 -16.62396 -16.18123 -15.79227 -15.64773 -15.47277 -15.18907 -14.09388 -13.83137 -13.67738 -13.24432 -13.15114 -12.81190 -12.60182 -12.37823 -12.30582 -12.13976 -11.79646 -11.57671 -11.41103 -11.34910 -11.13292 -11.03375 -11.00312 -10.72878 -10.66393 -10.14326 -10.08169 -9.83102 -9.63592 -9.46730 -9.39652 -7.78428 -7.66515 -7.12023 -4.70595 2.03101 2.84732 2.91016 2.94392 2.99897 3.29199 3.61451 3.68661 3.70057 4.39740 4.45089 4.51073 4.77197 4.90266 5.03634 5.17884 5.23249 5.37125 5.43799 5.48494 5.51246 5.62983 5.66762 5.81719 5.87932 5.99015 6.04863 6.11469 6.18618 6.23505 6.71936 6.74448 6.76804 6.95750 7.01352 7.09969 7.38615 7.64293 7.75375 7.80726 7.97947 8.32556 8.53761 8.66469 8.73003 9.79437 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.003130 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.481183 B = 8944.066302 C = 9680.190910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.074 0.926 4 O -0.376 6.376 5 C 0.045 3.955 6 C -0.146 4.146 7 C -0.120 4.120 8 H 0.094 0.906 9 C 0.076 3.924 10 O -0.360 6.360 11 C 0.515 3.485 12 O -0.553 6.553 13 C -0.275 4.275 14 C -0.018 4.018 15 C -0.239 4.239 16 C 0.132 3.868 17 C -0.435 4.435 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.765 5.765 21 Si 0.916 3.084 22 H -0.264 1.264 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.184 4.184 26 C -0.042 4.042 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.289 0.711 39 H 0.121 0.879 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 4.544 10.848 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.025 3.975 3 H 0.091 0.909 4 O -0.295 6.295 5 C -0.031 4.031 6 C -0.184 4.184 7 C -0.139 4.139 8 H 0.113 0.887 9 C 0.002 3.998 10 O -0.278 6.278 11 C 0.367 3.633 12 O -0.447 6.447 13 C -0.277 4.277 14 C -0.037 4.037 15 C -0.258 4.258 16 C 0.128 3.872 17 C -0.462 4.462 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.387 5.387 21 Si 0.739 3.261 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.181 1.181 25 C -0.203 4.203 26 C -0.061 4.061 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 1.687 4.743 11.091 12.180 hybrid contribution 0.440 -0.273 -0.735 0.899 sum 2.127 4.470 10.356 11.478 Atomic orbital electron populations 1.22082 0.93691 1.03438 1.02621 1.22662 0.95341 0.95415 0.84118 0.90860 1.88883 1.39872 1.67774 1.32979 1.23579 0.87523 0.96341 0.95697 1.23175 1.00874 0.98633 0.95671 1.22591 0.97005 0.97909 0.96369 0.88715 1.23028 0.95178 0.96433 0.85142 1.86570 1.40770 1.66409 1.34070 1.21565 0.83475 0.75469 0.82772 1.90693 1.18348 1.60484 1.75222 1.18230 0.94620 1.17050 0.97820 1.20357 0.97193 0.93564 0.92574 1.20693 0.95505 1.09623 1.00003 1.17852 0.90904 0.87293 0.91109 1.19942 1.01967 1.16713 1.07622 0.89454 1.26154 0.96504 0.94899 0.97385 1.69738 1.15042 1.18750 1.35195 0.86153 0.79825 0.80567 0.79512 1.18881 1.19879 1.18149 1.21007 0.99900 1.04743 0.94698 1.20629 0.93414 0.95938 0.96138 0.91316 0.91809 0.90723 0.88913 0.92111 0.90147 0.89508 0.91302 0.91305 0.87964 0.88056 0.90013 0.86104 0.88095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.40 37.16 0.31 -1.37 16 2 C 0.08 0.90 4.06 -26.15 -0.11 0.79 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 4 O -0.38 -4.56 11.19 -35.23 -0.39 -4.96 16 5 C 0.05 0.45 7.72 38.21 0.29 0.74 16 6 C -0.15 -1.65 6.56 -24.73 -0.16 -1.81 16 7 C -0.12 -1.43 3.34 -89.09 -0.30 -1.73 16 8 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 9 C 0.08 1.14 3.58 37.16 0.13 1.28 16 10 O -0.36 -6.79 9.29 -40.70 -0.38 -7.17 16 11 C 0.51 11.32 7.89 34.51 0.27 11.59 16 12 O -0.55 -12.91 16.11 -19.27 -0.31 -13.22 16 13 C -0.27 -6.42 5.89 -104.74 -0.62 -7.03 16 14 C -0.02 -0.43 9.52 -39.59 -0.38 -0.80 16 15 C -0.24 -5.67 9.73 -39.27 -0.38 -6.05 16 16 C 0.13 3.31 5.57 -106.80 -0.59 2.71 16 17 C -0.44 -10.57 9.04 -37.75 -0.34 -10.91 16 18 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 19 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 20 N -0.76 -17.97 10.97 55.56 0.61 -17.36 16 21 Si 0.92 16.80 29.59 -169.99 -5.03 11.77 16 22 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 23 H -0.27 -4.93 7.11 56.52 0.40 -4.52 16 24 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 25 C -0.18 -4.52 8.63 -39.27 -0.34 -4.86 16 26 C -0.04 -0.98 9.55 -39.59 -0.38 -1.35 16 27 H 0.07 0.78 6.75 -51.93 -0.35 0.43 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.73 6.80 -51.93 -0.35 0.37 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.99 7.83 -51.93 -0.41 0.59 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.00 6.64 -51.93 -0.34 0.66 16 35 H 0.07 1.05 6.85 -51.93 -0.36 0.69 16 36 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 38 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 39 H 0.12 2.99 6.19 -52.48 -0.32 2.67 16 40 H 0.10 2.12 7.59 -52.49 -0.40 1.72 16 LS Contribution 332.47 15.07 5.01 5.01 Total: -1.00 -27.58 332.47 -8.61 -36.18 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.44 Total: 6.98 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -2.67 Total: -17.24 kcal Atomic # 7 Polarization: -17.97 SS G_CDS: 0.61 Total: -17.36 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -1.08 Total: -25.34 kcal Atomic # 14 Polarization: 16.80 SS G_CDS: -5.03 Total: 11.77 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.58 -8.61 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869452893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.133 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds