Wall clock time and date at job start Tue Mar 31 2020 06:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.99182 * 2 1 4 4 O 1.43747 * 109.87677 * 121.08637 * 2 1 3 5 5 C 1.44376 * 106.97485 * 145.94109 * 4 2 1 6 6 C 1.54994 * 103.49257 * 319.93627 * 5 4 2 7 7 C 1.54103 * 109.88162 * 238.91270 * 2 1 3 8 8 H 1.09002 * 110.59426 * 119.81311 * 7 2 1 9 9 C 1.53002 * 110.48836 * 357.22549 * 7 2 1 10 10 O 1.45198 * 109.47019 * 178.77537 * 9 7 2 11 11 C 1.34777 * 116.99574 * 180.02562 * 10 9 7 12 12 O 1.21507 * 120.00087 * 359.97438 * 11 10 9 13 13 C 1.47509 * 119.99587 * 180.02562 * 11 10 9 14 14 C 1.40078 * 119.89793 * 179.97438 * 13 11 10 15 15 C 1.36302 * 120.10009 * 180.02562 * 14 13 11 16 16 C 1.40897 * 119.89714 * 359.97438 * 15 14 13 17 17 C 1.41093 * 120.09778 * 180.02562 * 16 15 14 18 18 H 1.07991 * 120.00251 * 334.91100 * 17 16 15 19 19 C 1.40247 * 119.99614 * 154.90836 * 17 16 15 20 20 N 1.30629 * 120.00279 * 342.66852 * 19 17 16 21 21 Si 1.86802 * 119.99688 * 162.66787 * 19 17 16 22 22 H 1.48499 * 109.47207 * 265.57903 * 21 19 17 23 23 H 1.48502 * 109.47007 * 145.57505 * 21 19 17 24 24 H 1.48506 * 109.47066 * 25.57825 * 21 19 17 25 25 C 1.40905 * 119.80346 * 0.27883 * 16 15 14 26 26 C 1.36299 * 119.89805 * 359.41389 * 25 16 15 27 27 H 1.09006 * 109.46829 * 181.07995 * 1 2 3 28 28 H 1.08993 * 109.47411 * 301.08392 * 1 2 3 29 29 H 1.08996 * 109.47021 * 61.08853 * 1 2 3 30 30 H 1.09005 * 110.61864 * 201.43373 * 5 4 2 31 31 H 1.09005 * 110.62172 * 78.44126 * 5 4 2 32 32 H 1.09005 * 110.90682 * 278.82967 * 6 5 4 33 33 H 1.08991 * 110.93877 * 155.23959 * 6 5 4 34 34 H 1.09003 * 109.47113 * 58.77324 * 9 7 2 35 35 H 1.09000 * 109.46797 * 298.77637 * 9 7 2 36 36 H 1.08000 * 119.94942 * 0.02804 * 14 13 11 37 37 H 1.07994 * 120.05271 * 179.97438 * 15 14 13 38 38 H 0.97005 * 119.99996 * 180.02562 * 20 19 17 39 39 H 1.08005 * 120.05174 * 179.70195 * 25 16 15 40 40 H 1.07999 * 119.95251 * 180.29740 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 8 2.0187 -0.6980 1.1577 5 6 3.2379 -1.3641 0.7648 6 6 2.9196 -1.8914 -0.6575 7 6 2.0541 -0.7483 -1.2410 8 1 2.6615 -0.0872 -1.8592 9 6 0.8900 -1.3191 -2.0534 10 8 1.4064 -1.9935 -3.2310 11 6 0.5038 -2.5553 -4.0595 12 8 -0.6820 -2.4838 -3.8044 13 6 0.9557 -3.2578 -5.2752 14 6 0.0159 -3.8414 -6.1345 15 6 0.4290 -4.4920 -7.2588 16 6 1.8036 -4.5766 -7.5562 17 6 2.2358 -5.2486 -8.7191 18 1 1.6200 -6.0197 -9.1575 19 6 3.4653 -4.9150 -9.3056 20 7 4.0487 -3.7861 -9.0026 21 14 4.2687 -6.0850 -10.5201 22 1 5.2355 -6.9552 -9.8037 23 1 4.9832 -5.3037 -11.5615 24 1 3.2260 -6.9262 -11.1608 25 6 2.7456 -3.9927 -6.6861 26 6 2.3232 -3.3386 -5.5674 27 1 -0.3633 -1.0276 0.0194 28 1 -0.3634 0.5305 0.8800 29 1 -0.3633 0.4968 -0.8996 30 1 3.4585 -2.1908 1.4402 31 1 4.0685 -0.6588 0.7357 32 1 2.3540 -2.8220 -0.6098 33 1 3.8329 -2.0228 -1.2376 34 1 0.2286 -0.5085 -2.3596 35 1 0.3343 -2.0300 -1.4419 36 1 -1.0376 -3.7756 -5.9059 37 1 -0.2962 -4.9419 -7.9205 38 1 4.8989 -3.5553 -9.4085 39 1 3.8006 -4.0593 -6.9077 40 1 3.0442 -2.8866 -4.9024 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869452893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:18 Heat of formation + Delta-G solvation = -141.247227 kcal Electronic energy + Delta-G solvation = -22413.631332 eV Core-core repulsion = 18963.943249 eV Total energy + Delta-G solvation = -3449.688084 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.45947 -40.55077 -39.22736 -37.31912 -35.74672 -34.38790 -32.44520 -32.16537 -31.38176 -28.66573 -27.58239 -26.01781 -24.06196 -23.14428 -22.83148 -21.68151 -20.79363 -19.40485 -18.68729 -18.01607 -17.58100 -17.11477 -16.95758 -16.66483 -16.21312 -15.77459 -15.27038 -15.12750 -14.87134 -14.42112 -14.14529 -13.97348 -13.80905 -13.50112 -13.31160 -13.28426 -13.08293 -12.89741 -12.69110 -12.57554 -12.38679 -12.04074 -11.93033 -11.79600 -11.68426 -11.42511 -11.40174 -11.24404 -11.13448 -10.66092 -9.63573 -9.53137 -8.84747 -6.55656 0.23741 1.12927 1.36913 1.41835 1.55003 1.83878 1.88914 2.15322 2.67897 2.87057 3.45458 3.52012 3.62271 3.79876 4.04523 4.14171 4.17783 4.29244 4.31427 4.35221 4.40396 4.48255 4.51470 4.62888 4.72726 4.86181 4.92171 4.97691 5.01627 5.03659 5.09664 5.11606 5.21170 5.22696 5.44308 5.55541 5.81221 5.90754 5.91655 5.96081 6.14927 6.48969 6.70162 6.81690 7.02202 8.10193 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027868 B = 0.003130 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.481183 B = 8944.066302 C = 9680.190910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 H 0.094 0.906 4 O -0.394 6.394 5 C 0.047 3.953 6 C -0.149 4.149 7 C -0.117 4.117 8 H 0.105 0.895 9 C 0.073 3.927 10 O -0.359 6.359 11 C 0.519 3.481 12 O -0.571 6.571 13 C -0.291 4.291 14 C -0.024 4.024 15 C -0.250 4.250 16 C 0.106 3.894 17 C -0.460 4.460 18 H 0.092 0.908 19 C 0.036 3.964 20 N -0.791 5.791 21 Si 0.991 3.009 22 H -0.259 1.259 23 H -0.265 1.265 24 H -0.255 1.255 25 C -0.202 4.202 26 C -0.038 4.038 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.064 0.936 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.063 0.937 36 H 0.110 0.890 37 H 0.113 0.887 38 H 0.300 0.700 39 H 0.114 0.886 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.052 4.848 10.983 12.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.112 0.888 4 O -0.314 6.314 5 C -0.029 4.029 6 C -0.187 4.187 7 C -0.135 4.135 8 H 0.123 0.877 9 C -0.001 4.001 10 O -0.276 6.276 11 C 0.372 3.628 12 O -0.467 6.467 13 C -0.294 4.294 14 C -0.042 4.042 15 C -0.269 4.269 16 C 0.102 3.898 17 C -0.486 4.486 18 H 0.110 0.890 19 C -0.184 4.184 20 N -0.414 5.414 21 Si 0.810 3.190 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.178 1.178 25 C -0.221 4.221 26 C -0.057 4.057 27 H 0.072 0.928 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.128 0.872 37 H 0.131 0.869 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.829 5.065 11.251 12.659 hybrid contribution 0.080 -0.308 -0.714 0.782 sum 2.910 4.757 10.537 11.921 Atomic orbital electron populations 1.22095 0.93686 1.02723 1.03441 1.22742 0.95439 0.96020 0.83103 0.88809 1.88867 1.40848 1.68151 1.33530 1.23702 0.87318 0.97064 0.94795 1.23189 1.00768 0.97778 0.96925 1.22631 0.96033 0.98326 0.96551 0.87698 1.23347 0.96777 0.96137 0.83832 1.86535 1.40122 1.66116 1.34855 1.21324 0.83412 0.75296 0.82790 1.90674 1.19074 1.61213 1.75722 1.18471 0.94817 1.17422 0.98662 1.20515 0.97735 0.93438 0.92561 1.20870 0.95495 1.10024 1.00527 1.18197 0.91594 0.88049 0.91942 1.20252 1.03398 1.17119 1.07863 0.88972 1.27020 0.96289 0.96181 0.98919 1.69759 1.15650 1.20013 1.35971 0.85040 0.78688 0.78167 0.77056 1.18336 1.18908 1.17810 1.21013 0.99553 1.06035 0.95490 1.20768 0.93773 0.95275 0.95852 0.92789 0.90730 0.90195 0.87699 0.90222 0.91715 0.88917 0.90820 0.91863 0.87165 0.86880 0.88904 0.86806 0.86350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 8.40 71.98 0.60 -2.57 16 2 C 0.08 1.67 4.06 30.97 0.13 1.80 16 3 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 4 O -0.39 -8.83 11.19 -148.98 -1.67 -10.50 16 5 C 0.05 0.84 7.72 72.66 0.56 1.40 16 6 C -0.15 -3.16 6.56 31.89 0.21 -2.95 16 7 C -0.12 -2.60 3.34 -9.80 -0.03 -2.64 16 8 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 9 C 0.07 2.12 3.58 71.98 0.26 2.37 16 10 O -0.36 -13.32 9.29 -56.88 -0.53 -13.85 16 11 C 0.52 22.79 7.89 70.27 0.55 23.34 16 12 O -0.57 -26.64 16.11 19.81 0.32 -26.32 16 13 C -0.29 -13.68 5.89 -19.94 -0.12 -13.80 16 14 C -0.02 -1.13 9.52 22.26 0.21 -0.92 16 15 C -0.25 -12.03 9.73 22.47 0.22 -11.82 16 16 C 0.11 5.38 5.57 -21.28 -0.12 5.26 16 17 C -0.46 -22.43 9.04 23.46 0.21 -22.22 16 18 H 0.09 4.25 7.91 -2.92 -0.02 4.23 16 19 C 0.04 1.62 5.14 85.36 0.44 2.06 16 20 N -0.79 -36.99 10.97 21.87 0.24 -36.75 16 21 Si 0.99 33.45 29.59 68.60 2.03 35.48 16 22 H -0.26 -8.50 7.11 99.48 0.71 -7.79 16 23 H -0.26 -8.49 7.11 99.48 0.71 -7.79 16 24 H -0.25 -8.40 7.11 99.48 0.71 -7.70 16 25 C -0.20 -10.05 8.63 22.47 0.19 -9.85 16 26 C -0.04 -1.76 9.55 22.26 0.21 -1.55 16 27 H 0.05 1.20 6.75 -2.38 -0.02 1.19 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.45 6.80 -2.39 -0.02 1.44 16 30 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.06 1.57 7.83 -2.38 -0.02 1.55 16 33 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.07 2.08 6.64 -2.39 -0.02 2.06 16 35 H 0.06 1.92 6.85 -2.39 -0.02 1.91 16 36 H 0.11 4.92 7.63 -2.91 -0.02 4.90 16 37 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 38 H 0.30 12.38 8.29 -92.70 -0.77 11.61 16 39 H 0.11 5.73 6.19 -2.91 -0.02 5.72 16 40 H 0.12 4.93 7.59 -2.91 -0.02 4.91 16 Total: -1.00 -58.38 332.47 4.97 -53.41 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 1.04 Total: 30.60 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 3.53 Total: -32.09 kcal Atomic # 7 Polarization: -36.99 SS G_CDS: 0.24 Total: -36.75 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -1.88 Total: -50.67 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.48 kcal Total: -58.38 4.97 -53.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869452893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.834 kcal (2) G-P(sol) polarization free energy of solvation -58.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds