Wall clock time and date at job start Tue Mar 31 2020 06:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86661 * 2 1 4 4 O 1.43738 * 110.00388 * 238.90884 * 2 1 3 5 5 C 1.44381 * 106.97775 * 213.99120 * 4 2 1 6 6 C 1.54997 * 103.48648 * 40.06055 * 5 4 2 7 7 C 1.54097 * 109.87877 * 121.00063 * 2 1 3 8 8 H 1.09000 * 110.49158 * 240.41664 * 7 2 1 9 9 C 1.53007 * 110.48906 * 2.93224 * 7 2 1 10 10 O 1.45202 * 109.47150 * 185.00160 * 9 7 2 11 11 C 1.34769 * 116.99778 * 179.97438 * 10 9 7 12 12 O 1.21509 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.47508 * 120.00059 * 179.97438 * 11 10 9 14 14 C 1.40065 * 119.89970 * 359.72793 * 13 11 10 15 15 C 1.36298 * 120.10361 * 179.71772 * 14 13 11 16 16 C 1.40906 * 119.89258 * 0.53356 * 15 14 13 17 17 C 1.41092 * 120.09598 * 179.76576 * 16 15 14 18 18 H 1.07994 * 119.99899 * 204.62634 * 17 16 15 19 19 C 1.40247 * 120.00095 * 24.62319 * 17 16 15 20 20 N 1.30635 * 120.00250 * 17.88258 * 19 17 16 21 21 Si 1.86798 * 119.99885 * 197.88562 * 19 17 16 22 22 H 1.48502 * 109.47541 * 90.00237 * 21 19 17 23 23 H 1.48508 * 109.46876 * 209.99932 * 21 19 17 24 24 H 1.48501 * 109.47172 * 329.99585 * 21 19 17 25 25 C 1.40898 * 119.80564 * 359.73746 * 16 15 14 26 26 C 1.36303 * 119.89556 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47338 * 298.99755 * 1 2 3 28 28 H 1.09005 * 109.46953 * 59.00051 * 1 2 3 29 29 H 1.08999 * 109.47128 * 179.00106 * 1 2 3 30 30 H 1.08993 * 110.61994 * 158.55910 * 5 4 2 31 31 H 1.09003 * 110.61840 * 281.40400 * 5 4 2 32 32 H 1.09003 * 110.90573 * 204.77964 * 6 5 4 33 33 H 1.08998 * 110.91171 * 81.17800 * 6 5 4 34 34 H 1.09000 * 109.47233 * 64.99443 * 9 7 2 35 35 H 1.09006 * 109.46568 * 305.00020 * 9 7 2 36 36 H 1.08002 * 119.94920 * 359.97438 * 14 13 11 37 37 H 1.08003 * 120.05267 * 180.25014 * 15 14 13 38 38 H 0.96996 * 120.00281 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.04914 * 179.97438 * 25 16 15 40 40 H 1.08000 * 119.94365 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6975 -1.1566 5 6 3.2418 -1.3609 -0.7618 6 6 2.9227 -1.8881 0.6604 7 6 2.0540 -0.7464 1.2422 8 1 2.6578 -0.0818 1.8601 9 6 0.8900 -1.3193 2.0533 10 8 1.3987 -1.9138 3.2765 11 6 0.4954 -2.4669 4.1097 12 8 -0.6851 -2.4524 3.8221 13 6 0.9396 -3.0900 5.3707 14 6 2.3015 -3.1106 5.6974 15 6 2.7160 -3.6802 6.8643 16 6 1.7732 -4.2587 7.7371 17 6 2.1981 -4.8538 8.9438 18 1 1.5952 -5.6189 9.4101 19 6 3.4033 -4.4517 9.5377 20 7 3.9544 -3.3181 9.1943 21 14 4.2205 -5.5370 10.8197 22 1 5.1530 -6.4786 10.1495 23 1 4.9760 -4.6894 11.7769 24 1 3.1822 -6.3057 11.5520 25 6 0.4048 -4.2406 7.4017 26 6 -0.0011 -3.6646 6.2349 27 1 -0.3634 0.4982 0.8988 28 1 -0.3633 0.5293 -0.8809 29 1 -0.3633 -1.0275 -0.0179 30 1 3.4649 -2.1874 -1.4364 31 1 4.0714 -0.6544 -0.7347 32 1 3.8358 -2.0168 1.2415 33 1 2.3591 -2.8199 0.6125 34 1 0.3772 -2.0805 1.4652 35 1 0.1916 -0.5199 2.3010 36 1 3.0238 -2.6709 5.0257 37 1 3.7659 -3.6920 7.1173 38 1 4.7882 -3.0402 9.6048 39 1 -0.3211 -4.6833 8.0676 40 1 -1.0498 -3.6499 5.9772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869452895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:24 Heat of formation + Delta-G solvation = -128.096762 kcal Electronic energy + Delta-G solvation = -22400.015489 eV Core-core repulsion = 18950.897653 eV Total energy + Delta-G solvation = -3449.117837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17011 -39.25990 -37.46128 -35.72859 -33.97667 -33.34328 -31.59538 -30.37317 -29.53458 -27.37646 -26.08935 -24.94670 -22.39588 -22.26079 -20.99332 -19.97982 -19.79412 -17.59290 -17.22869 -16.60358 -16.17167 -15.79457 -15.66793 -15.47565 -15.19647 -14.09692 -13.84633 -13.68329 -13.25331 -13.12998 -12.81163 -12.58660 -12.38168 -12.30780 -12.14016 -11.79726 -11.57897 -11.40832 -11.34623 -11.14392 -11.03484 -11.00789 -10.73414 -10.66388 -10.15005 -10.08369 -9.82836 -9.63880 -9.45912 -9.39230 -7.78577 -7.66855 -7.12507 -4.70589 2.03363 2.84857 2.90904 2.93764 3.00146 3.29620 3.61501 3.68346 3.69513 4.38427 4.44779 4.50822 4.77426 4.89904 5.03149 5.18207 5.23962 5.36207 5.43425 5.48621 5.51280 5.63141 5.66589 5.80804 5.88108 5.97420 6.04720 6.11555 6.18768 6.23769 6.71631 6.74108 6.76858 6.96037 7.01617 7.10254 7.38494 7.64546 7.75547 7.80780 7.97828 8.32462 8.53670 8.66585 8.73308 9.78744 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.003114 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.347116 B = 8989.169664 C = 9709.790199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.082 3.918 3 H 0.073 0.927 4 O -0.376 6.376 5 C 0.045 3.955 6 C -0.146 4.146 7 C -0.120 4.120 8 H 0.095 0.905 9 C 0.076 3.924 10 O -0.360 6.360 11 C 0.515 3.485 12 O -0.554 6.554 13 C -0.275 4.275 14 C -0.042 4.042 15 C -0.185 4.185 16 C 0.131 3.869 17 C -0.435 4.435 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.764 5.764 21 Si 0.916 3.084 22 H -0.263 1.263 23 H -0.274 1.274 24 H -0.258 1.258 25 C -0.239 4.239 26 C -0.018 4.018 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.289 0.711 39 H 0.101 0.899 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.047 4.055 -11.012 11.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.024 3.976 3 H 0.091 0.909 4 O -0.295 6.295 5 C -0.031 4.031 6 C -0.184 4.184 7 C -0.139 4.139 8 H 0.114 0.886 9 C 0.002 3.998 10 O -0.278 6.278 11 C 0.367 3.633 12 O -0.448 6.448 13 C -0.278 4.278 14 C -0.061 4.061 15 C -0.204 4.204 16 C 0.128 3.872 17 C -0.462 4.462 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.386 5.386 21 Si 0.739 3.261 22 H -0.188 1.188 23 H -0.199 1.199 24 H -0.182 1.182 25 C -0.259 4.259 26 C -0.037 4.037 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.119 0.881 37 H 0.139 0.861 38 H 0.100 0.900 39 H 0.119 0.881 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 1.817 4.249 -11.268 12.179 hybrid contribution 0.439 -0.254 0.742 0.899 sum 2.256 3.994 -10.526 11.482 Atomic orbital electron populations 1.22088 0.93692 1.03431 1.02614 1.22655 0.95332 0.95434 0.84131 0.90874 1.88879 1.39731 1.67907 1.32980 1.23572 0.87515 0.96389 0.95651 1.23190 1.00862 0.98617 0.95726 1.22589 0.97007 0.97928 0.96352 0.88639 1.23049 0.95268 0.97525 0.83975 1.86570 1.41079 1.69094 1.31100 1.21564 0.83344 0.74751 0.83624 1.90693 1.18696 1.59288 1.76090 1.18222 0.94882 1.18764 0.95903 1.20630 0.93475 0.96014 0.96017 1.21011 0.99943 1.05510 0.93946 1.17850 0.90802 0.86999 0.91557 1.19939 1.03490 1.17677 1.05072 0.89453 1.26159 0.96431 0.94510 0.97855 1.69739 1.16195 1.17005 1.35679 0.86164 0.79805 0.80415 0.79670 1.18805 1.19908 1.18184 1.20687 0.95527 1.10687 0.98965 1.20352 0.97160 0.93541 0.92610 0.90682 0.91808 0.91345 0.88937 0.92094 0.89510 0.90165 0.91382 0.91191 0.88103 0.86060 0.89986 0.88064 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.39 37.16 0.31 -1.37 16 2 C 0.08 0.90 4.05 -26.16 -0.11 0.79 16 3 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 4 O -0.38 -4.55 11.19 -35.23 -0.39 -4.95 16 5 C 0.05 0.45 7.72 38.21 0.29 0.74 16 6 C -0.15 -1.64 6.63 -24.72 -0.16 -1.80 16 7 C -0.12 -1.43 3.32 -89.09 -0.30 -1.73 16 8 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 9 C 0.08 1.14 3.60 37.16 0.13 1.27 16 10 O -0.36 -6.80 9.37 -40.68 -0.38 -7.19 16 11 C 0.51 11.33 7.89 34.51 0.27 11.60 16 12 O -0.55 -12.92 16.11 -19.27 -0.31 -13.24 16 13 C -0.28 -6.44 5.89 -104.75 -0.62 -7.05 16 14 C -0.04 -0.98 9.55 -39.60 -0.38 -1.36 16 15 C -0.18 -4.54 8.63 -39.27 -0.34 -4.88 16 16 C 0.13 3.29 5.58 -106.80 -0.60 2.70 16 17 C -0.43 -10.55 9.04 -37.75 -0.34 -10.89 16 18 H 0.09 2.01 7.91 -52.49 -0.42 1.59 16 19 C 0.07 1.66 5.14 -17.31 -0.09 1.57 16 20 N -0.76 -17.92 10.95 55.56 0.61 -17.32 16 21 Si 0.92 16.78 29.60 -169.99 -5.03 11.75 16 22 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 23 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 25 C -0.24 -5.68 9.73 -39.27 -0.38 -6.07 16 26 C -0.02 -0.42 9.52 -39.59 -0.38 -0.80 16 27 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.78 6.86 -51.93 -0.36 0.42 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.97 7.77 -51.93 -0.40 0.57 16 34 H 0.07 1.04 6.99 -51.93 -0.36 0.68 16 35 H 0.07 1.02 6.40 -51.93 -0.33 0.69 16 36 H 0.10 2.12 7.59 -52.49 -0.40 1.72 16 37 H 0.12 3.00 6.16 -52.48 -0.32 2.68 16 38 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 39 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 40 H 0.10 2.26 7.63 -52.49 -0.40 1.86 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -27.58 332.44 -8.60 -36.18 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -5.43 Total: 7.01 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -2.67 Total: -17.28 kcal Atomic # 7 Polarization: -17.92 SS G_CDS: 0.61 Total: -17.32 kcal Atomic # 8 Polarization: -24.28 SS G_CDS: -1.09 Total: -25.37 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.58 -8.60 -36.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869452895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.913 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds