Wall clock time and date at job start Tue Mar 31 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.86661 * 2 1 4 4 O 1.43738 * 110.00388 * 238.90884 * 2 1 3 5 5 C 1.44381 * 106.97775 * 213.99120 * 4 2 1 6 6 C 1.54997 * 103.48648 * 40.06055 * 5 4 2 7 7 C 1.54097 * 109.87877 * 121.00063 * 2 1 3 8 8 H 1.09000 * 110.49158 * 240.41664 * 7 2 1 9 9 C 1.53007 * 110.48906 * 2.93224 * 7 2 1 10 10 O 1.45202 * 109.47150 * 185.00160 * 9 7 2 11 11 C 1.34769 * 116.99778 * 179.97438 * 10 9 7 12 12 O 1.21509 * 120.00120 * 359.97438 * 11 10 9 13 13 C 1.47508 * 120.00059 * 179.97438 * 11 10 9 14 14 C 1.40065 * 119.89970 * 359.72793 * 13 11 10 15 15 C 1.36298 * 120.10361 * 179.71772 * 14 13 11 16 16 C 1.40906 * 119.89258 * 0.53356 * 15 14 13 17 17 C 1.41092 * 120.09598 * 179.76576 * 16 15 14 18 18 H 1.07994 * 119.99899 * 204.62634 * 17 16 15 19 19 C 1.40247 * 120.00095 * 24.62319 * 17 16 15 20 20 N 1.30635 * 120.00250 * 17.88258 * 19 17 16 21 21 Si 1.86798 * 119.99885 * 197.88562 * 19 17 16 22 22 H 1.48502 * 109.47541 * 90.00237 * 21 19 17 23 23 H 1.48508 * 109.46876 * 209.99932 * 21 19 17 24 24 H 1.48501 * 109.47172 * 329.99585 * 21 19 17 25 25 C 1.40898 * 119.80564 * 359.73746 * 16 15 14 26 26 C 1.36303 * 119.89556 * 0.02562 * 25 16 15 27 27 H 1.09002 * 109.47338 * 298.99755 * 1 2 3 28 28 H 1.09005 * 109.46953 * 59.00051 * 1 2 3 29 29 H 1.08999 * 109.47128 * 179.00106 * 1 2 3 30 30 H 1.08993 * 110.61994 * 158.55910 * 5 4 2 31 31 H 1.09003 * 110.61840 * 281.40400 * 5 4 2 32 32 H 1.09003 * 110.90573 * 204.77964 * 6 5 4 33 33 H 1.08998 * 110.91171 * 81.17800 * 6 5 4 34 34 H 1.09000 * 109.47233 * 64.99443 * 9 7 2 35 35 H 1.09006 * 109.46568 * 305.00020 * 9 7 2 36 36 H 1.08002 * 119.94920 * 359.97438 * 14 13 11 37 37 H 1.08003 * 120.05267 * 180.25014 * 15 14 13 38 38 H 0.96996 * 120.00281 * 180.02562 * 20 19 17 39 39 H 1.08001 * 120.04914 * 179.97438 * 25 16 15 40 40 H 1.08000 * 119.94365 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6975 -1.1566 5 6 3.2418 -1.3609 -0.7618 6 6 2.9227 -1.8881 0.6604 7 6 2.0540 -0.7464 1.2422 8 1 2.6578 -0.0818 1.8601 9 6 0.8900 -1.3193 2.0533 10 8 1.3987 -1.9138 3.2765 11 6 0.4954 -2.4669 4.1097 12 8 -0.6851 -2.4524 3.8221 13 6 0.9396 -3.0900 5.3707 14 6 2.3015 -3.1106 5.6974 15 6 2.7160 -3.6802 6.8643 16 6 1.7732 -4.2587 7.7371 17 6 2.1981 -4.8538 8.9438 18 1 1.5952 -5.6189 9.4101 19 6 3.4033 -4.4517 9.5377 20 7 3.9544 -3.3181 9.1943 21 14 4.2205 -5.5370 10.8197 22 1 5.1530 -6.4786 10.1495 23 1 4.9760 -4.6894 11.7769 24 1 3.1822 -6.3057 11.5520 25 6 0.4048 -4.2406 7.4017 26 6 -0.0011 -3.6646 6.2349 27 1 -0.3634 0.4982 0.8988 28 1 -0.3633 0.5293 -0.8809 29 1 -0.3633 -1.0275 -0.0179 30 1 3.4649 -2.1874 -1.4364 31 1 4.0714 -0.6544 -0.7347 32 1 3.8358 -2.0168 1.2415 33 1 2.3591 -2.8199 0.6125 34 1 0.3772 -2.0805 1.4652 35 1 0.1916 -0.5199 2.3010 36 1 3.0238 -2.6709 5.0257 37 1 3.7659 -3.6920 7.1173 38 1 4.7882 -3.0402 9.6048 39 1 -0.3211 -4.6833 8.0676 40 1 -1.0498 -3.6499 5.9772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869452895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:22 Heat of formation + Delta-G solvation = -141.030813 kcal Electronic energy + Delta-G solvation = -22400.576352 eV Core-core repulsion = 18950.897653 eV Total energy + Delta-G solvation = -3449.678699 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.45749 -40.55232 -39.22735 -37.31902 -35.75162 -34.39411 -32.44972 -32.16656 -31.37926 -28.66560 -27.58154 -26.02323 -24.05847 -23.14739 -22.83034 -21.68481 -20.80099 -19.40745 -18.69271 -18.00635 -17.55541 -17.12455 -16.96918 -16.66182 -16.22006 -15.77641 -15.27252 -15.13653 -14.89015 -14.42723 -14.11221 -13.97251 -13.81038 -13.49050 -13.31581 -13.28672 -13.07932 -12.89965 -12.69694 -12.58103 -12.38639 -12.04661 -11.93088 -11.80106 -11.67338 -11.42630 -11.41445 -11.23596 -11.13005 -10.66121 -9.63727 -9.53545 -8.85152 -6.55603 0.23963 1.13143 1.37028 1.41969 1.54637 1.84090 1.89030 2.15192 2.67662 2.86704 3.44215 3.51913 3.62389 3.80208 4.04208 4.15200 4.17155 4.29207 4.32118 4.35253 4.40404 4.47359 4.50904 4.63258 4.72474 4.86149 4.92233 4.97420 5.01637 5.03069 5.09083 5.11850 5.20814 5.22850 5.44551 5.55433 5.81448 5.90925 5.91452 5.96099 6.14839 6.48881 6.70020 6.81796 7.02365 8.09579 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.027984 B = 0.003114 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.347116 B = 8989.169664 C = 9709.790199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 H 0.093 0.907 4 O -0.394 6.394 5 C 0.047 3.953 6 C -0.149 4.149 7 C -0.117 4.117 8 H 0.104 0.896 9 C 0.072 3.928 10 O -0.359 6.359 11 C 0.519 3.481 12 O -0.571 6.571 13 C -0.292 4.292 14 C -0.038 4.038 15 C -0.203 4.203 16 C 0.105 3.895 17 C -0.459 4.459 18 H 0.092 0.908 19 C 0.036 3.964 20 N -0.790 5.790 21 Si 0.991 3.009 22 H -0.259 1.259 23 H -0.265 1.265 24 H -0.255 1.255 25 C -0.251 4.251 26 C -0.024 4.024 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.053 0.947 30 H 0.105 0.895 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.115 0.885 38 H 0.300 0.700 39 H 0.113 0.887 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.205 4.354 -11.122 12.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.111 0.889 4 O -0.314 6.314 5 C -0.029 4.029 6 C -0.187 4.187 7 C -0.136 4.136 8 H 0.123 0.877 9 C -0.001 4.001 10 O -0.277 6.277 11 C 0.372 3.628 12 O -0.467 6.467 13 C -0.295 4.295 14 C -0.057 4.057 15 C -0.222 4.222 16 C 0.102 3.898 17 C -0.485 4.485 18 H 0.110 0.890 19 C -0.184 4.184 20 N -0.413 5.413 21 Si 0.811 3.189 22 H -0.183 1.183 23 H -0.189 1.189 24 H -0.178 1.178 25 C -0.270 4.270 26 C -0.042 4.042 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.098 0.902 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.136 0.864 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.977 4.564 -11.403 12.638 hybrid contribution 0.074 -0.292 0.713 0.774 sum 3.051 4.273 -10.690 11.910 Atomic orbital electron populations 1.22099 0.93688 1.02743 1.03408 1.22730 0.95428 0.96025 0.83139 0.88881 1.88863 1.40720 1.68279 1.33505 1.23699 0.87282 0.97124 0.94777 1.23207 1.00763 0.97768 0.96946 1.22626 0.96036 0.98374 0.96518 0.87724 1.23370 0.96898 0.97333 0.82520 1.86534 1.40421 1.68647 1.32060 1.21325 0.83285 0.74579 0.83638 1.90675 1.19427 1.60045 1.76565 1.18462 0.95082 1.19108 0.96803 1.20768 0.93828 0.95331 0.95754 1.21020 0.99617 1.06829 0.94708 1.18195 0.91482 0.87750 0.92411 1.20254 1.04918 1.18113 1.05262 0.88954 1.27027 0.96239 0.95474 0.99681 1.69759 1.16764 1.18172 1.36567 0.85049 0.78637 0.78380 0.76880 1.18308 1.18893 1.17820 1.20864 0.95525 1.11095 0.99484 1.20509 0.97691 0.93415 0.92607 0.90210 0.90720 0.92769 0.87671 0.90238 0.88895 0.91611 0.91945 0.90729 0.86361 0.86743 0.88873 0.86889 0.87183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.39 71.98 0.60 -2.58 16 2 C 0.08 1.68 4.05 30.97 0.13 1.80 16 3 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 4 O -0.39 -8.80 11.19 -148.98 -1.67 -10.47 16 5 C 0.05 0.83 7.72 72.67 0.56 1.39 16 6 C -0.15 -3.14 6.63 31.90 0.21 -2.93 16 7 C -0.12 -2.61 3.32 -9.80 -0.03 -2.65 16 8 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 9 C 0.07 2.11 3.60 71.98 0.26 2.37 16 10 O -0.36 -13.37 9.37 -56.80 -0.53 -13.90 16 11 C 0.52 22.82 7.89 70.27 0.55 23.37 16 12 O -0.57 -26.69 16.11 19.80 0.32 -26.37 16 13 C -0.29 -13.74 5.89 -19.95 -0.12 -13.86 16 14 C -0.04 -1.77 9.55 22.26 0.21 -1.55 16 15 C -0.20 -10.09 8.63 22.47 0.19 -9.90 16 16 C 0.11 5.35 5.58 -21.27 -0.12 5.23 16 17 C -0.46 -22.38 9.04 23.46 0.21 -22.17 16 18 H 0.09 4.25 7.91 -2.91 -0.02 4.23 16 19 C 0.04 1.62 5.14 85.36 0.44 2.06 16 20 N -0.79 -36.87 10.95 21.88 0.24 -36.63 16 21 Si 0.99 33.39 29.60 68.60 2.03 35.42 16 22 H -0.26 -8.49 7.11 99.48 0.71 -7.78 16 23 H -0.26 -8.45 7.11 99.48 0.71 -7.75 16 24 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 25 C -0.25 -12.07 9.73 22.47 0.22 -11.85 16 26 C -0.02 -1.12 9.52 22.26 0.21 -0.90 16 27 H 0.08 1.47 6.73 -2.39 -0.02 1.45 16 28 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 29 H 0.05 1.20 6.86 -2.39 -0.02 1.19 16 30 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.07 1.57 7.77 -2.39 -0.02 1.55 16 34 H 0.06 1.90 6.99 -2.39 -0.02 1.89 16 35 H 0.07 2.12 6.40 -2.38 -0.02 2.10 16 36 H 0.12 4.93 7.59 -2.91 -0.02 4.91 16 37 H 0.11 5.76 6.16 -2.91 -0.02 5.75 16 38 H 0.30 12.37 8.29 -92.71 -0.77 11.60 16 39 H 0.11 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.11 4.92 7.63 -2.91 -0.02 4.90 16 Total: -1.00 -58.37 332.44 4.97 -53.40 By element: Atomic # 1 Polarization: 29.66 SS G_CDS: 1.04 Total: 30.71 kcal Atomic # 6 Polarization: -35.69 SS G_CDS: 3.53 Total: -32.15 kcal Atomic # 7 Polarization: -36.87 SS G_CDS: 0.24 Total: -36.63 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -1.88 Total: -50.74 kcal Atomic # 14 Polarization: 33.39 SS G_CDS: 2.03 Total: 35.42 kcal Total: -58.37 4.97 -53.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869452895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.630 kcal (2) G-P(sol) polarization free energy of solvation -58.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds