Wall clock time and date at job start Tue Mar 31 2020 06:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47004 * 300.00056 * 3 2 1 6 6 H 1.48492 * 109.46807 * 59.99739 * 3 2 1 7 7 C 1.37876 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00271 * 166.32735 * 7 2 1 9 9 C 1.50697 * 119.99828 * 346.33105 * 7 2 1 10 10 C 1.52994 * 115.55337 * 324.65473 * 9 7 2 11 11 O 1.45199 * 109.46879 * 305.76136 * 10 9 7 12 12 C 1.34811 * 117.00076 * 179.43874 * 11 10 9 13 13 O 1.21522 * 119.99819 * 5.50424 * 12 11 10 14 14 C 1.47265 * 119.99681 * 185.50557 * 12 11 10 15 15 N 1.31917 * 125.94453 * 356.19562 * 14 12 11 16 16 C 1.33316 * 109.15201 * 179.97438 * 15 14 12 17 17 C 1.34939 * 108.16929 * 359.97438 * 16 15 14 18 18 N 1.35617 * 107.37213 * 0.06457 * 17 16 15 19 19 C 1.46450 * 124.58026 * 179.83739 * 18 17 16 20 20 C 1.53281 * 108.75625 * 342.83051 * 19 18 17 21 21 C 1.53136 * 109.60171 * 50.50386 * 20 19 18 22 22 C 1.50763 * 128.31561 * 180.34285 * 17 16 15 23 23 C 1.53004 * 117.49577 * 110.32510 * 9 7 2 24 24 C 1.53005 * 117.49709 * 178.98185 * 9 7 2 25 25 H 0.97007 * 120.00073 * 5.09137 * 1 2 3 26 26 H 1.08993 * 109.47412 * 185.75951 * 10 9 7 27 27 H 1.08998 * 109.47383 * 65.75645 * 10 9 7 28 28 H 1.08004 * 125.91348 * 179.97438 * 16 15 14 29 29 H 1.08996 * 109.58880 * 102.61220 * 19 18 17 30 30 H 1.09002 * 109.59020 * 222.90203 * 19 18 17 31 31 H 1.08999 * 109.44879 * 170.55024 * 20 19 18 32 32 H 1.08998 * 109.44512 * 290.46369 * 20 19 18 33 33 H 1.09003 * 109.51188 * 50.46832 * 21 20 19 34 34 H 1.09005 * 109.51311 * 170.60648 * 21 20 19 35 35 H 1.08996 * 109.72747 * 283.87126 * 22 17 16 36 36 H 1.09005 * 109.73319 * 44.55138 * 22 17 16 37 37 H 1.09004 * 117.49284 * 215.00182 * 23 9 7 38 38 H 1.08998 * 117.50262 * 0.02562 * 23 9 7 39 39 H 1.08994 * 117.49864 * 359.97438 * 24 9 7 40 40 H 1.08994 * 117.49747 * 144.97474 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0616 -1.2074 -0.2205 9 6 1.2831 -2.4805 0.3095 10 6 0.1693 -2.3782 1.3534 11 8 0.6972 -1.7817 2.5674 12 6 -0.1649 -1.6088 3.5894 13 8 -1.2991 -2.0372 3.5066 14 6 0.2679 -0.9007 4.8059 15 7 1.4842 -0.4518 5.0493 16 6 1.5026 0.1347 6.2464 17 6 0.2630 0.0545 6.7733 18 7 -0.5177 -0.5955 5.8748 19 6 -1.9388 -0.8913 6.0689 20 6 -2.2725 -0.7508 7.5584 21 6 -1.7568 0.5951 8.0757 22 6 -0.2236 0.5759 8.1016 23 6 1.0869 -3.4735 -0.8378 24 6 2.0985 -3.7746 0.2709 25 1 -0.4850 0.8368 -0.0746 26 1 -0.2138 -3.3743 1.5749 27 1 -0.6374 -1.7569 0.9645 28 1 2.3611 0.5945 6.7134 29 1 -2.5403 -0.1890 5.4918 30 1 -2.1486 -1.9089 5.7395 31 1 -3.3527 -0.8024 7.6947 32 1 -1.7979 -1.5594 8.1144 33 1 -2.0970 1.3933 7.4159 34 1 -2.1366 0.7677 9.0828 35 1 0.1209 -0.0785 8.9023 36 1 0.1552 1.5853 8.2619 37 1 0.1643 -4.0539 -0.8488 38 1 1.4800 -3.1966 -1.8160 39 1 3.1566 -3.6955 0.0216 40 1 1.8417 -4.5528 0.9895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870013720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:35 Heat of formation + Delta-G solvation = 0.385633 kcal Electronic energy + Delta-G solvation = -23461.678725 eV Core-core repulsion = 20050.425054 eV Total energy + Delta-G solvation = -3411.253671 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.41456 -39.29669 -36.83862 -36.71628 -35.09208 -32.98100 -32.09671 -30.74250 -28.52184 -26.54546 -25.34992 -24.55304 -23.27378 -21.92416 -21.20785 -20.35682 -19.17812 -18.99208 -17.35761 -16.70907 -16.24132 -16.07757 -15.31978 -14.98936 -14.61246 -14.41403 -14.31124 -14.12660 -13.89209 -13.68731 -13.29886 -13.01567 -12.22887 -11.99138 -11.93885 -11.57404 -11.39114 -11.33735 -11.24899 -10.89697 -10.76450 -10.43959 -10.29831 -10.16229 -9.87576 -9.60131 -9.54291 -9.43771 -9.07000 -8.72149 -8.29454 -8.05350 -6.01552 -4.01638 1.49396 2.41122 2.74382 3.34465 3.44568 3.48886 3.51572 3.72487 4.24572 4.36993 4.44767 4.45678 4.58640 4.84371 5.04074 5.06311 5.14544 5.22853 5.38942 5.40288 5.49863 5.53296 5.59396 5.64812 5.71882 5.85134 6.03946 6.20264 6.35053 6.46870 6.60968 6.68712 6.71975 6.79625 6.96090 7.02375 7.28286 7.38186 7.40320 7.94657 7.99747 8.38665 8.55498 8.92238 9.57985 11.01727 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.005042 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.851654 B = 5552.195763 C = 6231.076082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.076 3.924 3 Si 0.895 3.105 4 H -0.270 1.270 5 H -0.287 1.287 6 H -0.281 1.281 7 C -0.479 4.479 8 H 0.064 0.936 9 C 0.048 3.952 10 C 0.114 3.886 11 O -0.294 6.294 12 C 0.553 3.447 13 O -0.528 6.528 14 C 0.166 3.834 15 N -0.412 5.412 16 C -0.026 4.026 17 C -0.004 4.004 18 N -0.411 5.411 19 C 0.099 3.901 20 C -0.134 4.134 21 C -0.128 4.128 22 C -0.045 4.045 23 C -0.191 4.191 24 C -0.208 4.208 25 H 0.261 0.739 26 H 0.031 0.969 27 H 0.114 0.886 28 H 0.177 0.823 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 0.524 16.983 17.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.126 4.126 3 Si 0.723 3.277 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.516 4.516 8 H 0.082 0.918 9 C 0.048 3.952 10 C 0.041 3.959 11 O -0.205 6.205 12 C 0.396 3.604 13 O -0.418 6.418 14 C -0.090 4.090 15 N -0.133 5.133 16 C -0.180 4.180 17 C -0.123 4.123 18 N -0.094 5.094 19 C -0.022 4.022 20 C -0.172 4.172 21 C -0.166 4.166 22 C -0.083 4.083 23 C -0.229 4.229 24 C -0.245 4.245 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.132 0.868 28 H 0.194 0.806 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.108 0.892 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.799 0.322 16.328 17.022 hybrid contribution -0.360 0.864 0.362 1.003 sum -5.159 1.185 16.690 17.509 Atomic orbital electron populations 1.69804 1.06196 1.26819 1.49547 1.24899 0.94720 0.99234 0.93760 0.86471 0.80522 0.83307 0.77375 1.19440 1.21309 1.20725 1.20439 0.94989 0.88999 1.47161 0.91790 1.18851 0.94302 0.89642 0.92429 1.22951 0.98885 0.94779 0.79316 1.86667 1.39319 1.72285 1.22275 1.19010 0.82968 0.76163 0.82245 1.90778 1.20351 1.48815 1.81893 1.21342 0.87304 1.09027 0.91340 1.70626 1.17554 1.10199 1.14895 1.22130 0.96412 1.06271 0.93200 1.21306 0.92546 1.03451 0.95023 1.44965 1.10317 1.40491 1.13605 1.22202 0.77703 1.04519 0.97826 1.21932 1.02626 0.98740 0.93868 1.21676 0.95195 0.97387 1.02307 1.20263 0.95327 1.01775 0.90956 1.22975 0.98910 1.05987 0.95003 1.22962 0.96871 1.02157 1.02513 0.92881 0.95079 0.86849 0.80563 0.89181 0.87626 0.89219 0.90668 0.91175 0.90310 0.89646 0.89037 0.91498 0.89695 0.90187 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 10.90 55.43 0.60 -24.78 16 2 C 0.08 2.15 5.16 -17.82 -0.09 2.06 16 3 Si 0.90 22.24 29.56 -169.99 -5.03 17.21 16 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 6 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.48 -13.50 8.76 -34.44 -0.30 -13.80 16 8 H 0.06 1.80 7.85 -52.49 -0.41 1.39 16 9 C 0.05 1.25 2.10 -155.66 -0.33 0.92 16 10 C 0.11 2.90 4.60 37.15 0.17 3.07 16 11 O -0.29 -7.60 9.90 -40.80 -0.40 -8.01 16 12 C 0.55 12.85 7.95 34.40 0.27 13.12 16 13 O -0.53 -12.10 15.00 -19.28 -0.29 -12.39 16 14 C 0.17 3.43 7.84 -154.84 -1.21 2.21 16 15 N -0.41 -8.54 11.27 -11.46 -0.13 -8.67 16 16 C -0.03 -0.41 11.82 -18.08 -0.21 -0.63 16 17 C 0.00 -0.05 6.57 -82.06 -0.54 -0.59 16 18 N -0.41 -6.57 3.14 -110.09 -0.35 -6.92 16 19 C 0.10 1.24 6.14 -3.92 -0.02 1.22 16 20 C -0.13 -1.10 5.93 -26.52 -0.16 -1.26 16 21 C -0.13 -0.95 5.96 -26.48 -0.16 -1.11 16 22 C -0.05 -0.38 6.31 -27.67 -0.17 -0.55 16 23 C -0.19 -4.35 9.96 -26.69 -0.27 -4.61 16 24 C -0.21 -4.66 9.92 -26.69 -0.26 -4.92 16 25 H 0.26 7.18 8.32 -40.82 -0.34 6.85 16 26 H 0.03 0.73 8.05 -51.93 -0.42 0.31 16 27 H 0.11 3.14 6.06 -51.93 -0.31 2.83 16 28 H 0.18 2.13 8.06 -52.48 -0.42 1.71 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.11 1.42 7.20 -51.93 -0.37 1.04 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 33 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.08 1.92 8.14 -51.93 -0.42 1.49 16 39 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 40 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 335.17 15.07 5.05 5.05 Total: -1.00 -32.81 335.17 -9.55 -42.36 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.73 Total: 1.02 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -3.29 Total: -4.87 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.13 Total: -40.37 kcal Atomic # 8 Polarization: -19.70 SS G_CDS: -0.69 Total: -20.39 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.03 Total: 17.21 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -32.81 -9.55 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870013720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.745 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds