Wall clock time and date at job start Tue Mar 31 2020 06:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00029 * 2 1 4 4 H 1.48495 * 109.47044 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47004 * 300.00056 * 3 2 1 6 6 H 1.48492 * 109.46807 * 59.99739 * 3 2 1 7 7 C 1.37876 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00271 * 166.32735 * 7 2 1 9 9 C 1.50697 * 119.99828 * 346.33105 * 7 2 1 10 10 C 1.52994 * 115.55337 * 324.65473 * 9 7 2 11 11 O 1.45199 * 109.46879 * 305.76136 * 10 9 7 12 12 C 1.34811 * 117.00076 * 179.43874 * 11 10 9 13 13 O 1.21522 * 119.99819 * 5.50424 * 12 11 10 14 14 C 1.47265 * 119.99681 * 185.50557 * 12 11 10 15 15 N 1.31917 * 125.94453 * 356.19562 * 14 12 11 16 16 C 1.33316 * 109.15201 * 179.97438 * 15 14 12 17 17 C 1.34939 * 108.16929 * 359.97438 * 16 15 14 18 18 N 1.35617 * 107.37213 * 0.06457 * 17 16 15 19 19 C 1.46450 * 124.58026 * 179.83739 * 18 17 16 20 20 C 1.53281 * 108.75625 * 342.83051 * 19 18 17 21 21 C 1.53136 * 109.60171 * 50.50386 * 20 19 18 22 22 C 1.50763 * 128.31561 * 180.34285 * 17 16 15 23 23 C 1.53004 * 117.49577 * 110.32510 * 9 7 2 24 24 C 1.53005 * 117.49709 * 178.98185 * 9 7 2 25 25 H 0.97007 * 120.00073 * 5.09137 * 1 2 3 26 26 H 1.08993 * 109.47412 * 185.75951 * 10 9 7 27 27 H 1.08998 * 109.47383 * 65.75645 * 10 9 7 28 28 H 1.08004 * 125.91348 * 179.97438 * 16 15 14 29 29 H 1.08996 * 109.58880 * 102.61220 * 19 18 17 30 30 H 1.09002 * 109.59020 * 222.90203 * 19 18 17 31 31 H 1.08999 * 109.44879 * 170.55024 * 20 19 18 32 32 H 1.08998 * 109.44512 * 290.46369 * 20 19 18 33 33 H 1.09003 * 109.51188 * 50.46832 * 21 20 19 34 34 H 1.09005 * 109.51311 * 170.60648 * 21 20 19 35 35 H 1.08996 * 109.72747 * 283.87126 * 22 17 16 36 36 H 1.09005 * 109.73319 * 44.55138 * 22 17 16 37 37 H 1.09004 * 117.49284 * 215.00182 * 23 9 7 38 38 H 1.08998 * 117.50262 * 0.02562 * 23 9 7 39 39 H 1.08994 * 117.49864 * 359.97438 * 24 9 7 40 40 H 1.08994 * 117.49747 * 144.97474 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0616 -1.2074 -0.2205 9 6 1.2831 -2.4805 0.3095 10 6 0.1693 -2.3782 1.3534 11 8 0.6972 -1.7817 2.5674 12 6 -0.1649 -1.6088 3.5894 13 8 -1.2991 -2.0372 3.5066 14 6 0.2679 -0.9007 4.8059 15 7 1.4842 -0.4518 5.0493 16 6 1.5026 0.1347 6.2464 17 6 0.2630 0.0545 6.7733 18 7 -0.5177 -0.5955 5.8748 19 6 -1.9388 -0.8913 6.0689 20 6 -2.2725 -0.7508 7.5584 21 6 -1.7568 0.5951 8.0757 22 6 -0.2236 0.5759 8.1016 23 6 1.0869 -3.4735 -0.8378 24 6 2.0985 -3.7746 0.2709 25 1 -0.4850 0.8368 -0.0746 26 1 -0.2138 -3.3743 1.5749 27 1 -0.6374 -1.7569 0.9645 28 1 2.3611 0.5945 6.7134 29 1 -2.5403 -0.1890 5.4918 30 1 -2.1486 -1.9089 5.7395 31 1 -3.3527 -0.8024 7.6947 32 1 -1.7979 -1.5594 8.1144 33 1 -2.0970 1.3933 7.4159 34 1 -2.1366 0.7677 9.0828 35 1 0.1209 -0.0785 8.9023 36 1 0.1552 1.5853 8.2619 37 1 0.1643 -4.0539 -0.8488 38 1 1.4800 -3.1966 -1.8160 39 1 3.1566 -3.6955 0.0216 40 1 1.8417 -4.5528 0.9895 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870013720.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:34 Heat of formation + Delta-G solvation = -18.085646 kcal Electronic energy + Delta-G solvation = -23462.479700 eV Core-core repulsion = 20050.425054 eV Total energy + Delta-G solvation = -3412.054646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.66626 -41.09377 -38.60090 -37.77033 -36.92347 -34.21357 -34.01095 -31.84150 -29.81188 -28.29244 -27.40528 -25.58015 -24.60306 -23.02023 -22.94962 -21.80522 -21.16236 -20.03447 -18.87539 -18.60326 -17.81567 -17.66771 -16.90427 -16.55704 -16.44802 -15.61198 -15.33037 -15.09135 -15.04571 -14.92414 -14.83694 -14.29377 -13.93992 -13.85558 -13.56282 -13.06351 -12.90188 -12.82014 -12.37919 -12.23457 -12.15576 -11.98120 -11.95780 -11.75759 -11.51712 -11.37206 -11.18912 -11.13331 -10.84663 -10.68490 -10.08513 -9.50880 -8.13782 -6.19130 0.03908 1.05160 1.33788 1.40170 1.40872 1.49691 2.07094 2.19545 2.38572 2.98097 3.28615 3.46251 3.54020 3.65626 3.72692 3.81933 4.10457 4.15806 4.19249 4.27863 4.32470 4.48698 4.52702 4.57444 4.69539 4.80569 4.84797 4.88756 4.91721 4.96670 5.08887 5.14437 5.26332 5.27527 5.33819 5.47388 5.53021 5.54102 5.78125 5.82766 6.30092 6.53011 6.76545 6.91015 7.41691 8.88001 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018739 B = 0.005042 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.851654 B = 5552.195763 C = 6231.076082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.034 3.966 3 Si 0.946 3.054 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.291 1.291 7 C -0.496 4.496 8 H 0.055 0.945 9 C 0.005 3.995 10 C 0.123 3.877 11 O -0.319 6.319 12 C 0.547 3.453 13 O -0.540 6.540 14 C 0.109 3.891 15 N -0.451 5.451 16 C -0.047 4.047 17 C 0.030 3.970 18 N -0.404 5.404 19 C 0.088 3.912 20 C -0.125 4.125 21 C -0.126 4.126 22 C -0.045 4.045 23 C -0.177 4.177 24 C -0.187 4.187 25 H 0.260 0.740 26 H 0.042 0.958 27 H 0.085 0.915 28 H 0.210 0.790 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.950 1.212 19.897 20.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.166 4.166 3 Si 0.773 3.227 4 H -0.189 1.189 5 H -0.199 1.199 6 H -0.217 1.217 7 C -0.533 4.533 8 H 0.073 0.927 9 C 0.004 3.996 10 C 0.050 3.950 11 O -0.231 6.231 12 C 0.391 3.609 13 O -0.431 6.431 14 C -0.144 4.144 15 N -0.174 5.174 16 C -0.201 4.201 17 C -0.092 4.092 18 N -0.087 5.087 19 C -0.032 4.032 20 C -0.162 4.162 21 C -0.163 4.163 22 C -0.083 4.083 23 C -0.215 4.215 24 C -0.224 4.224 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.103 0.897 28 H 0.227 0.773 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.134 0.866 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.133 0.867 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.103 0.897 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.962 0.985 19.215 19.870 hybrid contribution -0.318 0.661 -0.401 0.836 sum -5.280 1.646 18.814 19.610 Atomic orbital electron populations 1.69927 1.07118 1.27109 1.50456 1.25520 0.95418 1.01827 0.93815 0.85673 0.79673 0.80165 0.77236 1.18907 1.19917 1.21710 1.20669 0.94761 0.90601 1.47253 0.92653 1.18996 0.95963 0.90236 0.94356 1.22695 0.98119 0.94562 0.79597 1.86647 1.40523 1.73029 1.22902 1.19469 0.82727 0.76092 0.82589 1.90731 1.20517 1.49580 1.82312 1.20822 0.88691 1.12647 0.92258 1.70486 1.18340 1.11062 1.17492 1.22825 0.98682 1.06484 0.92088 1.22306 0.91402 0.99687 0.95812 1.45233 1.11380 1.39548 1.12562 1.22505 0.75913 1.03413 1.01419 1.21984 1.04445 0.99791 0.89996 1.21730 0.94267 0.96208 1.04126 1.20635 0.96196 1.03423 0.88014 1.22969 0.99807 1.04314 0.94387 1.22984 0.96951 1.00279 1.02215 0.93112 0.93964 0.89734 0.77347 0.89738 0.89265 0.86623 0.89948 0.92031 0.86652 0.86783 0.86510 0.89705 0.89705 0.89658 0.89404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.83 10.90 21.45 0.23 -53.59 16 2 C 0.03 1.97 5.16 84.65 0.44 2.41 16 3 Si 0.95 46.62 29.56 68.60 2.03 48.65 16 4 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 7 C -0.50 -28.62 8.76 25.60 0.22 -28.40 16 8 H 0.06 3.19 7.85 -2.91 -0.02 3.16 16 9 C 0.00 0.26 2.10 -52.93 -0.11 0.15 16 10 C 0.12 6.54 4.60 71.98 0.33 6.88 16 11 O -0.32 -17.32 9.90 -57.23 -0.57 -17.88 16 12 C 0.55 26.83 7.95 70.20 0.56 27.38 16 13 O -0.54 -26.17 15.00 19.76 0.30 -25.88 16 14 C 0.11 4.65 7.84 136.33 1.07 5.72 16 15 N -0.45 -19.17 11.27 -190.18 -2.14 -21.32 16 16 C -0.05 -1.41 11.82 83.71 0.99 -0.42 16 17 C 0.03 0.74 6.57 41.23 0.27 1.01 16 18 N -0.40 -12.84 3.14 -502.22 -1.58 -14.42 16 19 C 0.09 2.17 6.14 86.48 0.53 2.70 16 20 C -0.12 -1.64 5.93 30.73 0.18 -1.46 16 21 C -0.13 -1.28 5.96 30.76 0.18 -1.10 16 22 C -0.04 -0.54 6.31 29.99 0.19 -0.35 16 23 C -0.18 -7.99 9.96 30.62 0.30 -7.68 16 24 C -0.19 -8.28 9.92 30.62 0.30 -7.97 16 25 H 0.26 14.78 8.32 -92.70 -0.77 14.01 16 26 H 0.04 2.06 8.05 -2.39 -0.02 2.04 16 27 H 0.08 4.94 6.06 -2.39 -0.01 4.92 16 28 H 0.21 4.56 8.06 -2.91 -0.02 4.53 16 29 H 0.08 2.14 8.14 -2.39 -0.02 2.13 16 30 H 0.09 2.47 7.20 -2.39 -0.02 2.45 16 31 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.08 1.01 8.12 -2.39 -0.02 1.00 16 33 H 0.06 0.77 8.12 -2.39 -0.02 0.76 16 34 H 0.12 0.47 8.14 -2.38 -0.02 0.45 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.12 0.96 8.14 -2.38 -0.02 0.94 16 37 H 0.08 3.49 8.14 -2.38 -0.02 3.47 16 38 H 0.08 3.79 8.14 -2.39 -0.02 3.77 16 39 H 0.08 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.09 3.53 8.14 -2.39 -0.02 3.51 16 Total: -1.00 -75.73 335.17 4.77 -70.95 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.04 Total: 14.62 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.46 Total: -1.13 kcal Atomic # 7 Polarization: -85.84 SS G_CDS: -3.49 Total: -89.33 kcal Atomic # 8 Polarization: -43.49 SS G_CDS: -0.27 Total: -43.76 kcal Atomic # 14 Polarization: 46.62 SS G_CDS: 2.03 Total: 48.65 kcal Total: -75.73 4.77 -70.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870013720.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.868 kcal (2) G-P(sol) polarization free energy of solvation -75.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds