Wall clock time and date at job start Tue Mar 31 2020 06:50:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86794 * 119.99791 * 2 1 4 4 H 1.48493 * 109.47357 * 359.97438 * 3 2 1 5 5 H 1.48507 * 109.46930 * 119.99861 * 3 2 1 6 6 H 1.48500 * 109.47235 * 239.99563 * 3 2 1 7 7 C 1.37880 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99553 * 181.77893 * 7 2 1 9 9 C 1.50703 * 120.00069 * 1.77776 * 7 2 1 10 10 O 1.45203 * 112.84865 * 298.52184 * 9 7 2 11 11 C 1.34805 * 117.00177 * 294.89110 * 10 9 7 12 12 O 1.21535 * 120.00031 * 2.98223 * 11 10 9 13 13 C 1.47263 * 120.00223 * 182.99155 * 11 10 9 14 14 N 1.31926 * 125.94065 * 359.68640 * 13 11 10 15 15 C 1.33312 * 109.15865 * 179.86888 * 14 13 11 16 16 C 1.34943 * 108.15864 * 0.36222 * 15 14 13 17 17 N 1.35622 * 107.38028 * 359.81436 * 16 15 14 18 18 C 1.46454 * 124.58173 * 179.89718 * 17 16 15 19 19 C 1.53263 * 108.76115 * 342.83676 * 18 17 16 20 20 C 1.53140 * 109.62108 * 50.46889 * 19 18 17 21 21 C 1.50759 * 128.30920 * 179.88183 * 16 15 14 22 22 C 1.53779 * 113.61387 * 167.33081 * 9 7 2 23 23 C 1.53954 * 87.01956 * 220.04626 * 22 9 7 24 24 C 1.53779 * 113.61515 * 69.71783 * 9 7 2 25 25 H 0.97004 * 120.00016 * 175.06534 * 1 2 3 26 26 H 1.07987 * 125.92123 * 180.10381 * 15 14 13 27 27 H 1.09000 * 109.58262 * 102.60501 * 18 17 16 28 28 H 1.08999 * 109.58796 * 223.04037 * 18 17 16 29 29 H 1.09003 * 109.44566 * 290.42425 * 19 18 17 30 30 H 1.09003 * 109.42531 * 170.50351 * 19 18 17 31 31 H 1.09003 * 109.51063 * 170.62228 * 20 19 18 32 32 H 1.09001 * 109.54997 * 50.50266 * 20 19 18 33 33 H 1.09003 * 109.73402 * 283.79077 * 21 16 15 34 34 H 1.09003 * 109.73792 * 44.47677 * 21 16 15 35 35 H 1.09009 * 113.61148 * 334.56346 * 22 9 7 36 36 H 1.08994 * 113.61604 * 105.46763 * 22 9 7 37 37 H 1.08998 * 113.53913 * 270.81379 * 23 22 9 38 38 H 1.08997 * 113.74673 * 139.93571 * 23 22 9 39 39 H 1.08997 * 113.61429 * 254.53052 * 24 9 7 40 40 H 1.08998 * 113.61174 * 25.35304 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0842 -1.1943 0.0296 9 6 1.2516 -2.4989 -0.0394 10 8 0.3851 -2.6852 1.1108 11 6 0.9817 -2.8027 2.3139 12 8 2.1888 -2.6967 2.4065 13 6 0.1708 -3.0598 3.5160 14 7 -1.1416 -3.1893 3.5516 15 6 -1.5249 -3.4169 4.8080 16 6 -0.4243 -3.4235 5.5887 17 7 0.6444 -3.1992 4.7844 18 6 2.0323 -3.1282 5.2466 19 6 2.0361 -2.9149 6.7643 20 6 1.1240 -3.9486 7.4312 21 6 -0.3367 -3.6364 7.0787 22 6 2.1423 -3.7151 -0.3429 23 6 0.9942 -4.2340 -1.2276 24 6 0.5564 -2.7681 -1.3844 25 1 -0.4850 -0.8370 -0.0723 26 1 -2.5405 -3.5656 5.1434 27 1 2.5451 -4.0598 5.0073 28 1 2.5376 -2.2946 4.7589 29 1 1.6742 -1.9119 6.9907 30 1 3.0516 -3.0284 7.1438 31 1 1.2547 -3.9057 8.5125 32 1 1.3799 -4.9458 7.0729 33 1 -0.6558 -2.7332 7.5989 34 1 -0.9722 -4.4730 7.3690 35 1 3.0453 -3.4666 -0.9007 36 1 2.3401 -4.3398 0.5281 37 1 0.2737 -4.8496 -0.6891 38 1 1.3295 -4.6913 -2.1585 39 1 -0.5243 -2.6293 -1.3528 40 1 1.0241 -2.2591 -2.2271 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000870345406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:32 Heat of formation + Delta-G solvation = -29.234764 kcal Electronic energy + Delta-G solvation = -24023.081264 eV Core-core repulsion = 20610.543156 eV Total energy + Delta-G solvation = -3412.538108 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.63337 -41.33837 -38.94207 -37.75949 -36.20660 -34.55719 -33.98194 -31.78879 -29.50839 -28.05423 -26.61836 -25.88223 -24.99064 -24.13038 -22.92934 -22.01309 -20.33304 -20.02740 -19.48912 -18.56166 -17.43603 -17.41989 -16.73877 -16.53219 -15.73317 -15.69701 -15.34535 -15.26645 -15.07868 -14.89932 -14.86623 -14.45886 -14.32613 -13.94723 -13.27416 -13.07861 -12.78075 -12.46361 -12.36237 -12.14524 -12.11046 -11.98271 -11.96460 -11.95352 -11.84518 -11.50033 -11.20102 -10.99706 -10.84161 -10.62889 -10.20776 -9.47821 -8.64264 -6.44370 0.16107 1.14869 1.44839 1.48450 1.53035 1.72873 2.16879 2.26694 2.50068 3.12587 3.35546 3.46786 3.57494 3.70372 3.76814 3.81038 3.87961 4.05199 4.14022 4.18945 4.28244 4.42758 4.50253 4.57011 4.68488 4.79472 4.83821 4.84518 4.92368 4.93887 5.02168 5.08438 5.24922 5.26410 5.32730 5.41934 5.57454 5.60421 5.82466 6.01999 6.11159 6.52788 6.68799 7.05568 7.40187 8.72515 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.005589 C = 0.005027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.453319 B = 5008.657156 C = 5568.256504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.016 4.016 3 Si 1.107 2.893 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.605 4.605 8 H 0.045 0.955 9 C 0.181 3.819 10 O -0.341 6.341 11 C 0.550 3.450 12 O -0.524 6.524 13 C 0.109 3.891 14 N -0.456 5.456 15 C -0.048 4.048 16 C 0.023 3.977 17 N -0.405 5.405 18 C 0.091 3.909 19 C -0.127 4.127 20 C -0.122 4.122 21 C -0.045 4.045 22 C -0.140 4.140 23 C -0.122 4.122 24 C -0.108 4.108 25 H 0.269 0.731 26 H 0.211 0.789 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.116 0.884 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.122 0.878 35 H 0.088 0.912 36 H 0.044 0.956 37 H 0.074 0.926 38 H 0.095 0.905 39 H 0.048 0.952 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.469 -9.163 15.904 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.219 4.219 3 Si 0.928 3.072 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.643 4.643 8 H 0.063 0.937 9 C 0.147 3.853 10 O -0.256 6.256 11 C 0.393 3.607 12 O -0.413 6.413 13 C -0.145 4.145 14 N -0.178 5.178 15 C -0.201 4.201 16 C -0.098 4.098 17 N -0.088 5.088 18 C -0.030 4.030 19 C -0.165 4.165 20 C -0.159 4.159 21 C -0.082 4.082 22 C -0.178 4.178 23 C -0.159 4.159 24 C -0.146 4.146 25 H 0.080 0.920 26 H 0.227 0.773 27 H 0.110 0.890 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.086 0.914 33 H 0.126 0.874 34 H 0.140 0.860 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.379 -7.418 15.152 16.927 hybrid contribution 0.714 -1.406 0.009 1.577 sum 2.093 -8.824 15.161 17.666 Atomic orbital electron populations 1.70783 1.07585 1.31569 1.44869 1.27197 0.96606 1.06049 0.92023 0.83096 0.74357 0.71861 0.77844 1.20514 1.21045 1.18361 1.22218 0.93807 0.91975 1.56260 0.93709 1.21320 0.88436 0.94416 0.81095 1.86532 1.43282 1.80543 1.15251 1.19219 0.84915 0.73387 0.83135 1.90721 1.15277 1.48087 1.87232 1.21216 0.90151 1.17448 0.85674 1.70446 1.08251 1.14465 1.24678 1.22813 1.00844 1.09109 0.87371 1.22310 0.86014 1.04598 0.96895 1.45230 1.09903 1.48349 1.05315 1.22434 0.77778 1.04098 0.98652 1.22002 1.03957 1.01303 0.89215 1.21731 0.92718 0.98410 1.03079 1.20649 0.99244 1.05232 0.83110 1.23315 0.98282 0.97008 0.99159 1.22850 0.97243 0.95477 1.00313 1.22920 0.99304 0.96503 0.95881 0.92010 0.77258 0.88958 0.90569 0.90774 0.86572 0.86673 0.91355 0.87445 0.86016 0.89329 0.93711 0.90728 0.88626 0.93287 0.89170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.78 13.51 21.45 0.29 -57.49 16 2 C -0.02 -0.96 5.40 84.65 0.46 -0.50 16 3 Si 1.11 52.70 29.90 68.60 2.05 54.75 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 6 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 7 C -0.61 -35.80 7.35 25.60 0.19 -35.61 16 8 H 0.04 2.70 7.81 -2.91 -0.02 2.67 16 9 C 0.18 9.76 0.11 -11.01 0.00 9.76 16 10 O -0.34 -19.35 9.10 -57.17 -0.52 -19.87 16 11 C 0.55 29.29 7.34 70.19 0.52 29.80 16 12 O -0.52 -28.42 13.40 19.72 0.26 -28.16 16 13 C 0.11 4.99 7.84 136.32 1.07 6.06 16 14 N -0.46 -20.16 11.27 -190.20 -2.14 -22.31 16 15 C -0.05 -1.51 11.82 83.71 0.99 -0.53 16 16 C 0.02 0.63 6.57 41.23 0.27 0.90 16 17 N -0.41 -14.06 3.14 -502.25 -1.58 -15.64 16 18 C 0.09 2.56 6.10 86.48 0.53 3.09 16 19 C -0.13 -2.08 5.93 30.73 0.18 -1.90 16 20 C -0.12 -1.40 5.96 30.80 0.18 -1.22 16 21 C -0.04 -0.61 6.31 30.03 0.19 -0.42 16 22 C -0.14 -6.42 6.91 31.18 0.22 -6.21 16 23 C -0.12 -4.80 8.03 31.18 0.25 -4.55 16 24 C -0.11 -5.14 6.67 31.12 0.21 -4.93 16 25 H 0.27 17.41 5.76 -92.71 -0.53 16.88 16 26 H 0.21 4.79 8.06 -2.92 -0.02 4.76 16 27 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 28 H 0.08 2.60 7.28 -2.39 -0.02 2.58 16 29 H 0.07 1.27 8.12 -2.39 -0.02 1.25 16 30 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.85 8.12 -2.39 -0.02 0.83 16 33 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 3.90 8.09 -2.38 -0.02 3.88 16 36 H 0.04 2.08 7.32 -2.39 -0.02 2.06 16 37 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.05 2.40 7.77 -2.39 -0.02 2.38 16 40 H 0.09 4.19 8.09 -2.39 -0.02 4.17 16 Total: -1.00 -81.40 327.40 4.88 -76.52 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: 1.27 Total: 18.45 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: 5.24 Total: -6.25 kcal Atomic # 7 Polarization: -92.01 SS G_CDS: -3.43 Total: -95.44 kcal Atomic # 8 Polarization: -47.77 SS G_CDS: -0.26 Total: -48.03 kcal Atomic # 14 Polarization: 52.70 SS G_CDS: 2.05 Total: 54.75 kcal Total: -81.40 4.88 -76.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870345406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.286 kcal (2) G-P(sol) polarization free energy of solvation -81.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds