Wall clock time and date at job start Tue Mar 31 2020 06:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47274 * 2 1 4 4 H 1.08997 * 109.47751 * 54.99871 * 3 2 1 5 5 O 1.45205 * 109.46814 * 294.99456 * 3 2 1 6 6 C 1.34232 * 116.99627 * 90.00376 * 5 3 2 7 7 O 1.20822 * 119.99905 * 359.97438 * 6 5 3 8 8 C 1.50701 * 119.99990 * 180.02562 * 6 5 3 9 9 C 1.50700 * 109.47142 * 179.97438 * 8 6 5 10 10 C 1.37639 * 120.12226 * 264.99598 * 9 8 6 11 11 C 1.38619 * 120.24239 * 179.74445 * 10 9 8 12 12 C 1.38649 * 120.50201 * 0.26191 * 11 10 9 13 13 C 1.37590 * 120.25257 * 0.02562 * 12 11 10 14 14 C 1.40696 * 120.13135 * 85.26575 * 9 8 6 15 15 C 1.41396 * 120.24305 * 0.02562 * 14 9 8 16 16 H 1.08008 * 119.99856 * 334.30298 * 15 14 9 17 17 C 1.39946 * 120.00304 * 154.30177 * 15 14 9 18 18 N 1.30823 * 119.99468 * 343.65178 * 17 15 14 19 19 Si 1.86796 * 120.00127 * 163.65186 * 17 15 14 20 20 H 1.48494 * 109.47087 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47037 * 120.00439 * 19 17 15 22 22 H 1.48499 * 109.46933 * 239.99769 * 19 17 15 23 23 C 1.50704 * 109.47163 * 175.00308 * 3 2 1 24 24 C 1.50705 * 119.99451 * 284.99315 * 23 3 2 25 25 O 1.20759 * 120.00180 * 104.99558 * 23 3 2 26 26 H 1.09003 * 109.46987 * 300.00209 * 1 2 3 27 27 H 1.08993 * 109.47218 * 60.00470 * 1 2 3 28 28 H 1.09002 * 109.47184 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47455 * 239.99245 * 2 1 3 30 30 H 1.09007 * 109.47334 * 119.99430 * 2 1 3 31 31 H 1.09000 * 109.46834 * 59.99449 * 8 6 5 32 32 H 1.09002 * 109.46843 * 299.99703 * 8 6 5 33 33 H 1.07999 * 119.87936 * 0.02750 * 10 9 8 34 34 H 1.07998 * 119.74393 * 180.23248 * 11 10 9 35 35 H 1.08000 * 119.87453 * 180.02562 * 12 11 10 36 36 H 1.07999 * 120.13414 * 180.02562 * 13 12 11 37 37 H 0.97003 * 119.99997 * 180.02562 * 18 17 15 38 38 H 1.09000 * 109.47110 * 0.02562 * 24 23 3 39 39 H 1.09004 * 109.46963 * 120.00439 * 24 23 3 40 40 H 1.09002 * 109.46737 * 239.99818 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 8 1.6559 2.0916 -1.2408 6 6 0.4728 2.7254 -1.2561 7 8 -0.2192 2.7370 -0.2657 8 6 0.0070 3.4215 -2.5089 9 6 -1.3411 4.0488 -2.2635 10 6 -2.4901 3.3731 -2.6065 11 6 -3.7316 3.9455 -2.3770 12 6 -3.8311 5.2048 -1.8055 13 6 -2.6957 5.9009 -1.4601 14 6 -1.4299 5.3296 -1.6881 15 6 -0.2561 6.0357 -1.3374 16 1 0.6516 5.4959 -1.1110 17 6 -0.2704 7.4341 -1.2837 18 7 -1.2415 8.1006 -1.8532 19 14 1.0970 8.3488 -0.3989 20 1 2.0678 7.3717 0.1558 21 1 1.7914 9.2472 -1.3559 22 1 0.5188 9.1549 0.7062 23 6 3.5419 1.4442 0.1238 24 6 4.1888 1.1442 1.4514 25 8 4.2270 1.6861 -0.8408 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 -0.0719 2.6968 -3.3193 32 1 0.7240 4.1956 -2.7823 33 1 -2.4244 2.3914 -3.0519 34 1 -4.6280 3.4065 -2.6458 35 1 -4.8035 5.6409 -1.6308 36 1 -2.7754 6.8816 -1.0146 37 1 -1.2513 9.0698 -1.8163 38 1 3.4169 0.9519 2.1965 39 1 4.8267 0.2656 1.3545 40 1 4.7909 1.9977 1.7633 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873376586.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:46 Heat of formation + Delta-G solvation = -117.206134 kcal Electronic energy + Delta-G solvation = -23333.580630 eV Core-core repulsion = 19884.935046 eV Total energy + Delta-G solvation = -3448.645584 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.50615 -39.09410 -37.62829 -35.91275 -33.74783 -33.66920 -31.77580 -30.57173 -29.51592 -27.72726 -26.54982 -25.05001 -22.33140 -21.24037 -20.95807 -19.70555 -19.36260 -17.37656 -17.21113 -16.62224 -16.08679 -15.42111 -15.22885 -14.89464 -14.60316 -14.45315 -14.07286 -13.68663 -13.49512 -12.90037 -12.72892 -12.61852 -12.39372 -12.07924 -11.98026 -11.88865 -11.77998 -11.59258 -11.25687 -11.14097 -11.02577 -10.91629 -10.74056 -10.41969 -10.34166 -9.82957 -9.54369 -9.48106 -9.40093 -9.20339 -7.38438 -7.35715 -6.78358 -4.39915 1.78600 2.62187 2.82708 2.91588 3.06123 3.11681 3.18686 3.23574 3.91618 3.99965 4.61931 4.72439 4.76603 4.94739 5.02646 5.15728 5.24117 5.44602 5.52755 5.64840 5.70707 5.74997 5.86326 5.94040 6.00313 6.11112 6.24483 6.36578 6.41494 6.46879 6.71568 6.92005 7.04558 7.24472 7.36333 7.36672 7.59284 7.86458 8.00802 8.08222 8.25921 8.43282 8.60331 8.86167 8.95403 10.15743 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.005926 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.217616 B = 4724.016169 C = 6304.682779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.035 3.965 4 H 0.112 0.888 5 O -0.345 6.345 6 C 0.458 3.542 7 O -0.487 6.487 8 C -0.042 4.042 9 C -0.194 4.194 10 C -0.076 4.076 11 C -0.240 4.240 12 C -0.104 4.104 13 C -0.158 4.158 14 C 0.131 3.869 15 C -0.457 4.457 16 H 0.074 0.926 17 C 0.078 3.922 18 N -0.791 5.791 19 Si 0.903 3.097 20 H -0.261 1.261 21 H -0.273 1.273 22 H -0.271 1.271 23 C 0.356 3.644 24 C -0.197 4.197 25 O -0.435 6.435 26 H 0.066 0.934 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.108 0.892 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.117 0.883 37 H 0.280 0.720 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.461 -10.971 4.933 13.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.022 4.022 4 H 0.129 0.871 5 O -0.264 6.264 6 C 0.301 3.699 7 O -0.372 6.372 8 C -0.079 4.079 9 C -0.195 4.195 10 C -0.094 4.094 11 C -0.259 4.259 12 C -0.122 4.122 13 C -0.177 4.177 14 C 0.128 3.872 15 C -0.487 4.487 16 H 0.092 0.908 17 C -0.140 4.140 18 N -0.416 5.416 19 Si 0.727 3.273 20 H -0.185 1.185 21 H -0.198 1.198 22 H -0.196 1.196 23 C 0.229 3.771 24 C -0.254 4.254 25 O -0.306 6.306 26 H 0.085 0.915 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.126 0.874 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.135 0.865 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.114 0.886 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.556 -10.600 4.684 13.315 hybrid contribution 0.410 0.512 0.614 0.898 sum 6.966 -10.088 5.298 13.356 Atomic orbital electron populations 1.21823 0.93709 1.01507 1.03644 1.21813 0.98051 0.93545 1.03239 1.23216 0.94369 0.95454 0.89151 0.87080 1.86711 1.38906 1.64146 1.36600 1.24548 0.78023 0.75358 0.91956 1.90626 1.54488 1.56531 1.35545 1.19994 0.97743 0.98862 0.91308 1.19026 0.90817 0.98423 1.11268 1.20310 0.92707 0.96970 0.99409 1.20308 0.95535 0.97838 1.12231 1.20695 0.97044 0.94823 0.99670 1.21291 0.91464 1.00580 1.04386 1.17347 0.93094 0.89790 0.86957 1.19526 0.97279 0.90847 1.41040 0.90810 1.25879 0.96695 0.98271 0.93154 1.69822 1.30614 1.09080 1.32133 0.86341 0.81314 0.79675 0.79963 1.18482 1.19839 1.19624 1.24632 0.89911 0.72327 0.90226 1.22217 1.02733 1.04703 0.95784 1.90433 1.65837 1.33834 1.40461 0.91450 0.92333 0.92576 0.90747 0.90002 0.89368 0.87427 0.89593 0.89535 0.89475 0.86469 0.90879 0.89677 0.88607 0.88445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.56 37.15 0.32 -1.64 16 2 C -0.13 -1.48 5.62 -26.74 -0.15 -1.63 16 3 C 0.03 0.49 2.51 -27.88 -0.07 0.42 16 4 H 0.11 1.60 7.16 -51.93 -0.37 1.23 16 5 O -0.35 -6.23 9.40 -45.79 -0.43 -6.66 16 6 C 0.46 9.17 6.07 36.01 0.22 9.39 16 7 O -0.49 -10.68 13.17 -18.75 -0.25 -10.93 16 8 C -0.04 -0.85 5.29 -29.03 -0.15 -1.00 16 9 C -0.19 -4.60 4.43 -103.91 -0.46 -5.06 16 10 C -0.08 -1.70 9.66 -39.66 -0.38 -2.09 16 11 C -0.24 -5.44 10.05 -39.29 -0.39 -5.84 16 12 C -0.10 -2.48 10.02 -39.67 -0.40 -2.87 16 13 C -0.16 -4.14 8.68 -38.88 -0.34 -4.48 16 14 C 0.13 3.44 5.56 -106.83 -0.59 2.85 16 15 C -0.46 -11.99 8.15 -37.74 -0.31 -12.29 16 16 H 0.07 1.90 6.68 -52.48 -0.35 1.55 16 17 C 0.08 1.95 5.16 -17.34 -0.09 1.86 16 18 N -0.79 -20.26 10.97 55.55 0.61 -19.65 16 19 Si 0.90 18.90 29.59 -169.99 -5.03 13.87 16 20 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 23 C 0.36 4.61 6.56 -29.03 -0.19 4.42 16 24 C -0.20 -1.57 10.28 36.01 0.37 -1.20 16 25 O -0.43 -7.31 17.31 -13.23 -0.23 -7.54 16 26 H 0.07 0.94 7.80 -51.93 -0.40 0.54 16 27 H 0.06 0.92 6.06 -51.93 -0.31 0.60 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 31 H 0.09 1.53 8.05 -51.93 -0.42 1.11 16 32 H 0.11 2.22 7.04 -51.93 -0.37 1.85 16 33 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 35 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 36 H 0.12 3.16 6.22 -52.49 -0.33 2.83 16 37 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 38 H 0.08 0.51 8.00 -51.93 -0.42 0.09 16 39 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 338.52 15.07 5.10 5.10 Total: -1.00 -30.73 338.52 -8.33 -39.06 By element: Atomic # 1 Polarization: 11.40 SS G_CDS: -5.48 Total: 5.92 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: -2.62 Total: -19.17 kcal Atomic # 7 Polarization: -20.26 SS G_CDS: 0.61 Total: -19.65 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.91 Total: -25.13 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.73 -8.33 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873376586.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.146 kcal (2) G-P(sol) polarization free energy of solvation -30.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds